acvr1ba (LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107695803)


Basic Information

Item Value
gene id acvr1ba
gene name LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107695803
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16083732 ~ 16099759 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225249.1
ATTGTCTAGCCGAGTCTGGCAGGCGGTGTATGGTTGGTTGGTTTGTGGTTGTGTTGGAAGTCTCGCTCGCTTGTCAATATCACACACAACGAATGCATTAATGCTAAGAGATGGGAATCTTGCAGTCATGCTTCCACGACGAACTGCTGTAGCGCTGCTCGCCCTGTGTGGATTAATAGCGGTCGGCGATGCTCTTAAGTGTAATTGCACTGCCTGTGAGAGCAGCGGTTATGTCTGCGAGACTGATGGGGCCTGCATGGCCTCTACGTCCCACATCAAAGGTCAGGAGGAGCAGCAAGTTCGGATCTGCATCCCCCGTGTCAATCTGGTACCACCCGGACAGCCCATCTACTGCTTGAGCGCCAAAGGCCTGTTTAACACGCACTGCTGTTATACAGACTTCTGCAACAGCATCAACCTCCAGATTCCCAGCGGCATTATTGACGGTAAAGAGGACAGCTGGGGTCCTGTAGAGCTGGTGGCAGTGATAGCAGGCCCGGTCTTTCTCTTTTGCCTGCTGCTTATCGTAGGAGTGCTCGTTTTCCAGCATCACCAGCGCAACTATAACCATCGACAGCGACTCGACGTTGAGGATCCGTCCTGTGATCATCTGTACTTGGCCAAAGACAAGACCTTACAGGATCTCATCTTCGATCTGTCCACCTCCGGTTCAGGATCTGGTCTGCCTTTGTTTGTTCAGCGAACGGTGGCCAGGACAATTGTTCTGCAGGAAATTATTGGTAAAGGTCGCTTTGGGGAAGTATGGAGGGGGAGATGGAGAGGAGGGGATGTGGCTGTAAAGATCTTCTCGTCCAGAGAGGAACGCTCCTGGTTCCGTGAGGCTGAGATTTACCAGACCATCATGCTCCGTCACGAGAACATCTTGGGCTTCATTGCTGCTGATAATAAGGACAATGGCACATGGACACAGCTGTGGCTGGTGTCGGACTATCACGAACATGGGTCATTATTCGACTATCTCAACCACTACTCCGTCACAATCGAGGGGATGATTAAGTTGGCTCTCTCAGCGGCCAGCGGCCTGGCACATCTGCACATGGAGATCCTGGGAACACAGGGGAAACCAGGCATTGCACACCGTGACCTCAAATCTAAAAACATCCTGGTGAAAAAGAATGGTACTTGTGCCATAGCAGATCTGGGGCTCGCTGTACGGCACGAGTCCATCACTGATACTATAGACATCGCACCTAATCAGAGGGTCGGCACCAAAAGATATATGGCCCCAGAGGTACTAGATGAAACGATCAACATGAAGCATTTTGATTCTTTCAAGTGTGCTGATATTTACGCTTTGGGACTGGTATACTGGGAGATTGCGCGACGGTGTAATGCTGGAGGCATCCATGAAGATTACCAGCTTCCCTACTACGATCTGGTGCCCTCCGACCCATCTATAGAAGAGATGAGGAAGGTGGTGTGCGATCAGAGACTACGGCCCAATGTGCCCAACTGGTGGCAGAGCTACGAGGCGCTGAGAGTGATGGGGAAGATCATGCGGGAGTGTTGGTATGCCAACGGAGCGGCGAGGCTTACGGCTCTGCGGATTAAGAAGACTCTCTCGCAACTCAGCGTCCAAGAAGACGTTAAGATCTGAAAGACGCGGGGTGCTGCAGATCCCTGTAGAGACGCACAAGCGAATAAAGACTTACGCCAAAAGCAGCCTGCCAGTTTTAGCCCTTTTTTGAACCTTCTAAAAGTTGTGACGAGGCCTACCTCACCATCTTAGACGAAACTACTGAGGTTGAGTCCATCCCAGCCCTTTTCCCTTCTCCGACATCAAAGTTCCCAATTGTGGATGAGCCTCCAACCGCTGATTTCAGCACAACCTCCCTCCATGGACCTActgttgtttctctttttctttttggcagGAATGACAATGGAACTGTGACAGGCATTTTGATTTGATCGTTTTTATTTCACCACTTTCGTCCAAAATGGACTTTGCcgtgtgactttttttaaaagaatgtttcGATTTCATTTTTGTGCGTCCTCACACACTAACACAACGTATGTCATATTCCAGTGTGAATCTGTGATTATATATAGTGCTCTACTGCTGTTGtgagaatgtgaaaaaatgtgGATAACACTGTCTCCTCCTGTTATGACTAGCAATTTATGTACAGACCTAAGTGTAGCAAAGCGAACACACGTGACTGTGTGACAAAGTGGCATTGCATTTCTTTGTTCCTGTGGAAGAAATGAAGAAGTGCAGATTATTTACTCCAGTAAAAATCAGCCTGCTAATTTATCTTCCTTCAGGCTGCATTAGTTTAAAAACTCGCTCCATTAATTTGGTTTCGGGTTcgaatgctttttaaatgttcacagggagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtttatttaattgtttttgggTTCTTAAAATCCGTTGTGATTGCTGAATGCATTGTGGGATGATTGTTTAGTCCTGTTGTCTGATGGAATACTGagaaaataacactttttttggcatAAGGAAAGTCACTACCACTTgtatgctttgctttttttttttttttttttttttttttttcaacttatcaaatgaatttattttattggaaCGTTTAGTATGTTCTATTCCCATTATTCTGGGATGCTGGCATGTTAAAATGCACTGTTGTTATTTGTTTGCAGTCCTTTTAGGGATGTAGTAGACACACACATGTAAAGTGCTGAAGTAAAATAATGCGTCTCTCTATTTGCCTGCATTACAACATTTATATTGCTCTGCTTTGCCTTGCATTGAAGAGGTGTCATTCAGTTTAATTTCAAAGTACTACTGAACATTTTTAGGGTTTGCAACGACTAACCACCGAATGCTGGGCACGGCGTCACTGCATCATATGCCAACTTCACTACTCCCTCCATCCTTTATTAACTTCGCTTGCACCATTGTCTTGATAAAAGTTAAGAAATCTGCAGATATTGTGAATGACTAACTGGAATCtgatatacatataaacagtaGATGCAAAATGAGACTAGATTAGCATTAGCTTTGGCATTAAAGCCAAATGCTAGTTGAAGGGCTGGAGGAGAACAAGGGTCCTGTGTTGTGTATCATTTAATTGATTGCAGGCTCTATTACAGTCCATTTGTGATTGACCTGTGCATTTTATACTGTCAAGGTCATATCATTTGAATCTGCTCTGTGTAGCTGGAATTCGTTTGAATTCAGTCGAAGAAAGGCTAAAATAACTGAGAAATATGACTGAATATTGTTATATCATGGTGCTCTACATCATACACTGGGAATTCTGTCCTTAGAAATGTATAGGCTAATTGTTCCACTATTTATATTGTGCTTGCTTTTTTCCCTTACAACTTGGATTTTGCAGATGTTTGTAAAACATGTAACTTTTGCAGAAGATTTAAGGAATGAAACTCATTTCAGATGGTAGTTACTGCCACTTTATGGAGGCAATTTAGTCGAAATTCCCTGAAATGTTTGTCCATTTTAGTCTTGATGATAAGAGTTCAGACTTGGTAGCTGATGCTTTCAATCCAATGCATATGAGTTTTTGATCCTGAGGTTCCatgtgtattttaaacatattgaaAACAAATCCACTTGTGGGTTAGTtaatataatgtacataaaTGGTATACAGTAATAAatcctttttctta

Function

NR:

description
PREDICTED: activin receptor type-1B-like

GO:

id name namespace
GO:0001707 mesoderm formation biological_process
GO:0007493 endodermal cell fate determination biological_process
GO:0006468 protein phosphorylation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0031101 fin regeneration biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K13567 ACVR1B, ALK4; activin receptor type-1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225249.1 True 3687 mRNA 0.44 9 16083732 16099759

Neighbor

gene id symbol gene type direction distance location
dnajc22 dnajc22,LOC107708801,LOC107571715,LOC107716089,LOC107563648,LOC107695753 coding downstream 60362 16021317 ~ 16023370 (-)
ikzf4 si:dkey-166n8.9,ikzf4,LOC107681936,LOC107695809,LOC107570458,LOC107563647 coding downstream 64085 16009720 ~ 16019647 (-)
wnt10b wnt10b,LOC107570475,LOC107745470,LOC107681943,LOC107716203,LOC107695810,LOC107563634 coding downstream 92167 15984905 ~ 15991565 (-)
arf3a arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 coding downstream 100563 15978616 ~ 15983169 (-)
phf8 phf8,LOC107570386,LOC107745465,LOC107681973,LOC107563633,LOC107695732 coding downstream 108023 15966421 ~ 15975709 (-)
acvrl1 acvrl1,LOC107695804,LOC107708857,LOC107570535,LOC107681938 coding upstream 2649 16102408 ~ 16115284 (-)
ankrd33aa ankrd33aa,LOC107708858,LOC107570559,LOC107563641,LOC107716213,LOC107695800,LOC108433401 coding upstream 18633 16118392 ~ 16126411 (-)
sp5l sp5l,LOC107708798,LOC107681947,LOC107695752,LOC107586542,LOC107571725,LOC108276147,LOC108432429 coding upstream 89672 16189431 ~ 16192678 (-)
b4galnt1a b4galnt1a,LOC107708855,LOC107681939,LOC107586541,LOC107716216,LOC107570598,LOC107695798 coding upstream 123050 16222809 ~ 16234574 (-)
znf385a LOC107695795,LOC107716219,LOC107586538,LOC107570601,LOC107708851,LOC107681944 coding upstream 159316 16259075 ~ 16331672 (-)
G158227 NA non-coding downstream 117969 15964753 ~ 15965763 (-)
G158208 NA non-coding downstream 270805 15812281 ~ 15812927 (-)
G158198 NA non-coding downstream 294401 15728154 ~ 15789331 (-)
G158188 NA non-coding downstream 401860 15680886 ~ 15681872 (-)
G158174 LOC107571455 non-coding downstream 476652 15603848 ~ 15607080 (-)
G158282 NA non-coding upstream 1866 16101625 ~ 16102214 (-)
G158284 NA non-coding upstream 18122 16117881 ~ 16118214 (-)
G158333 NA non-coding upstream 147257 16247016 ~ 16247293 (-)
G158353 NA non-coding upstream 317166 16416925 ~ 16439280 (-)
G158377 NA non-coding upstream 324205 16423964 ~ 16424362 (-)
G158231 NA other downstream 74817 16008106 ~ 16008915 (-)
LOC122329227 NA other downstream 366482 15621942 ~ 15717250 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other downstream 609342 15347417 ~ 15474390 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other downstream 782050 14684890 ~ 15301682 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other upstream 44074 16143833 ~ 16169834 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other upstream 141051 16240810 ~ 16243395 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other upstream 255610 16355369 ~ 16358705 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 1076866 17176625 ~ 17184385 (-)
G158609 NA other upstream 1239508 17339267 ~ 17343385 (-)

Expression


Co-expression Network