LOC122329052 (LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795)


Basic Information

Item Value
gene id LOC122329052
gene name LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16674237 ~ 16677367 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225250.1
GCTCTGACGCACCAATGGAGAGCTAACGGACCTGCACTGGCGCAGACGGACTGTTGACATACACAAACCATCAGCGGGGAGTCTGGGACTttgtctttctatttttttaacagaatttcTTTTAAACGTTTTGACAGTGTGTTCATTCTATTTGACCACCTTTTTTTATCGAAGTGAGGACAAGTGCCGCATTAACAGATCACAATGATGACCAAACCTTATGGAAAACCAGGGGATGTGACTGAACTAGTCAGCTCTCTCGGATGGATGGAGGAAGACCTCAGCTCACAGGATGGTGACCGGACACCTGAGATAGGTCACTATGCTCTACACAGGAGGCCTGTAGAGCTTGGCAGTGAGGatatggaggaagaggaggaggaggaagaggaagaagtaGGTCTCGACGGAGAAAAGGCACCCAAGCGAAGAGGtcctaaaaagaagaaaatgaccAAAGCCAGACAAGAACGCTTCCGTGCCCGACGCGTCAAGGCCAACGCCAGGGAACGCTCACGCATGCATGGGCTGAACGACGCATTGGACAACTTGAGGCGCGTGATGCCTTGTTACTCCAAGACCCAGAAGCTCTCCAAAATCGAGACCCTGCGGCTGGCCCGCAACTACATCTGGGCACTATCAGAGGTTCTGGAGAGCGGCCAGTCACCCGAGAGCCTTGGTTTTGTGGAGATGCTATGCAAGGGGCTTTCGCAACCTACCAGCAACCTTGTGGCGGGCTGCCTCCAACTTGGACCCTCGTCCATGCTGATCAACAAGCTGGATGAGAAGTGTGGGGTTCCGGGAGTTGGTGGTCCTCAGGGTCACCCCATCAGCTATCCTTCACCGGGACTTCCCAGTCCACCCTATGGCTCGTTGGAGGCCTCACACTTGCTTCATCTGAAGGGCTTCAAGGGGGCTAGCTACGAAAACTCCTCACCCAACGAATGTAGCAGCGGCACGCCACCTTACGACGGCCCTCTTACTCCACCACTCAGCATCAGCGGTAACTTCGCCCTCAAGCAGGAGCCTTCACCGCACGAGGCTGAGAGGAACTTTACCCCTCACCCGACCCACGCCGCCCATTACATCTCTTCTCACCCTTACCCTACTTCCTCCTTGGctggtcttccagctcctcaGGGTCACCCGCTGTTCCCAGGCTCTCGTTTTGAGCTTCCTTTAGACATGGCTTTTGAGCCGTTTACCCCTTCACACATTGTGACATCACAGATGAGCAGCATTTACAGCGAATAAACAGAAACGACCACCAGAGACACTCAGCAATTCTGCCTCCCGCTCCTCAGTGTGCCTCAAGGGGCACAGCACATTTAAGGAGACACTTTGCATGTATCCTGTCTGATCCCTTAAGAGACCATAGTGGTCACTGAGAGAGAGTATGTGAAACGCAACCTACCTGTGGCAACCGAAGTACTGAGAAAGAgatgcatatttttttgttaatttattcttgtttcTGTCATGATTGAGTTTGTTActtctttaaatgttatttttaattgttctgggatttgtattttgtaatcACTCGATGTTCTTCACCTCAAATAAGATGACGACTTTGGTGCACGTGCCATAAAAGTGCATCAAAACTGACAAATAGACAAGATTTTTAAACGCATATAAGAGCCTCAGTATTTTTCAGCACTGTTCAACCAGATGCTATTTTTCCActtaacaaaacacacaaaacataaataaataaaaagaaagaatgaaggaAAAGGACAAATTTAGTACATTACATTTGCCATAacgaatgcatttatttatgactgtatttaatatttattttgatttgtcagcactgtttttattggtttgttGGTACACTGCCAGTCACTGCTACCAATACTCATAAAgtatctaatttatttattggaattcattcagtttaatgtattttttttgtcattctccacaatatttgtaattttgctCAAGcgtttgtaaatatttacc

Function

NR:

description
PREDICTED: neurogenic differentiation factor 4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001839 neural plate morphogenesis biological_process
GO:0071698 olfactory placode development biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09079 NEUROD4, ATOH3, MATH3; neurogenic differentiation factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225250.1 True 1980 mRNA 0.46 2 16674237 16677367

Neighbor

gene id symbol gene type direction distance location
LOC122328572 acvr1ba,LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107563637,LOC107695803 coding downstream 57898 16609478 ~ 16616339 (-)
LOC122328366 LOC107708845,LOC107682000,LOC107570669,LOC107716098,LOC107695785,LOC107586560,LOC107586530 coding downstream 128549 16541514 ~ 16545688 (-)
ribc1 LOC107681983,LOC107708847,LOC107570642,LOC107695788,LOC107586532,LOC107716094 coding downstream 168434 16488226 ~ 16505803 (-)
tmem107l tmem107l,tmem107,LOC107571795,LOC107695749,LOC108433473,LOC107708779 coding downstream 272532 16399805 ~ 16401705 (-)
c1ql4a LOC107716093,LOC107708794,LOC107681949,LOC107571784,LOC107695791,LOC107586535 coding downstream 297429 16359689 ~ 16376808 (-)
LOC122329053 neurog1,LOC107598364,LOC107741101,LOC107664747,LOC107710304,LOC107662038,LOC107563607 coding upstream 2939 16680306 ~ 16681688 (-)
plxna2 plxna2,LOC107594012,LOC108425528 coding upstream 154718 16832085 ~ 17007286 (-)
hrct1 chia,LOC107671898,LOC107594041,LOC107756356 coding upstream 493746 17171113 ~ 17176489 (-)
itga5 itga5,LOC107671874,LOC107697976,LOC107594039 coding upstream 537232 17214599 ~ 17258164 (-)
csrnp2 csrnp2,LOC107671888,LOC107715040,LOC107594006,LOC107598537,LOC107756414 coding upstream 616811 17294178 ~ 17302565 (-)
G158462 NA non-coding downstream 66277 16607461 ~ 16607960 (-)
G158432 NA non-coding downstream 120842 16553043 ~ 16553395 (-)
G158417 masp2,LOC107571531,LOC107708846 non-coding downstream 143141 16530052 ~ 16531096 (-)
G158404 NA non-coding downstream 173387 16498369 ~ 16500850 (-)
G158388 NA non-coding downstream 230200 16443806 ~ 16444037 (-)
G158481 NA non-coding upstream 46564 16723931 ~ 16724403 (-)
G158483 NA non-coding upstream 50071 16727438 ~ 16727715 (-)
G158484 NA non-coding upstream 50734 16728101 ~ 16728343 (-)
G158587 NA non-coding upstream 404840 17082207 ~ 17082684 (-)
G158591 NA non-coding upstream 475458 17152825 ~ 17225569 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 315532 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 430842 16240810 ~ 16243395 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 504403 16143833 ~ 16169834 (-)
G158231 NA other downstream 665322 16008106 ~ 16008915 (-)
LOC122329227 NA other downstream 956987 15621942 ~ 15717250 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 499258 17176625 ~ 17184385 (-)
G158609 NA other upstream 661900 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 736336 17413703 ~ 17422517 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 1368559 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 1554276 18231643 ~ 18235536 (-)

Expression


Co-expression Network