neurod4 (LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795)


Basic Information

Item Value
gene id neurod4
gene name LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16341446 ~ 16344687 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225267.1
GCTCTGACGCACCAATGGAGAGCTAACGGACCTGCACTGGCGCAGACGGACTGTTGACATACACAAACCATCAGCGGGGAGTCTGGGACTttgtctttctatttttttaacagaatttcTTTTAAACGTTTTGACAGTGTGTTCATTCTATTTGACCACCTTTTTTTTATCGAAGTGAGGACAAGTGCCGCATTAACAGATCACAATGATGACCAAACCTTATGGAAAACCAGGGGATGTGACTGAACTAGTCAGCTCTCTCGGATGGATGGAGGAAGACCTCAGCTCACAGGATGGTGACCGGACACCTGAGATAGGTCACTATGCTCTACACAGGAGGCCTGTAGAGCTTGGCAGTGAGGatatggaggaagaggaggaggaggaagaggaagaagtaGGTCTCGACGGAGAAAAGGCACCCAAGCGAAGAGGtcctaaaaagaagaaaatgaccAAAGCCAGACAAGAACGCTTCCGTGCCCGACGCGTCAAGGCCAACGCCAGGGAACGCTCACGCATGCATGGGCTGAACGACGCATTGGACAACTTGAGGCGCGTGATGCCTTGTTACTCCAAGACCCAGAAGCTCTCCAAAATCGAGACCCTGCGGCTGGCCCGCAACTACATCTGGGCACTATCAGAGGTTCTGGAGAGCGGCCAGTCACCCGAGAGCCTTGGTTTTGTGGAGATGCTATGCAAGGGGCTTTCGCAACCTACCAGCAACCTTGTGGCGGGCTGCCTCCAACTTGGACCCTCGTCCATGCTGATCAACAAGCTGGATGAGAAGTGTGGGGTTCCGGGAGTTGGTGGTCCTCAGGGTCACCCCATCAGCTATCCTTCACCGGGACTTCCCAGTCCACCCTATGGCTCGTTGGAGGCCTCACACTTGCTTCATCTGAAGGGCTTCAAGGGGGCTAGCTACGAAAACTCCTCACCCAACGAATGTAGCAGCGGCACGCCACCTTACGACGGCCCTCTTACTCCACCACTCAGCATCAGCGGTAACTTCGCCCTCAAGCAGGAGCCTTCACCGCACGAGGCTGAGAGGAACTTTACCCCTCACCCGACCCACGCCGCCCATTACATCTCTTCTCACCCTTACCCTCCTTCCTCCTTGGctggtcttccagctcctcaGGGTCACCCGCTGTTCCCAGGCTCCCGTTTTGAGCTTCCTTTAGACATGGCTTTTGAGCCGTTTACCCCTTCACACATTGTGACATCACAGATGAGCAGCATTTACAGCGAATAAACAGAAACGACCACCAGAGACACTCAGCAATTCTGCCTCCCGCTCCTCAGTGTGCCTCAAGGGGCACAGCACATTTAAGGAGACACTTTGCATGTATCCTGTCTGATCCCTTAAGAGACCATAGTGGTCACTGAGAGAGAGTATGTGAAACGCAACCTACCTGTGGCAACCGAAGTACTGAGAAAGAgatgcatatttttttgttaatttattcttgtttcTGTCATGATTGAGTTTGTTActtctttaaatgttatttttaattgttctgggatttgtattttgtaatcACTCGATGTTCTTCACCTCAAATAAGATGACGACTTTGGTGCACGTGCCATAAAAGTGCATCAAAACTGACAAATAGACAAGATTTTTAAACGCATATAAGAGCCTCAGTATTTTTCAGCACTGTTCAACCAGATGCTATTTTTCCActtaacaaaacacacaaaacataaataaataaaaagaaagaatgaaggaAAAGGACAAATTTAGTACATTACATTTGCCATAacgaatgcatttatttatgactgtatttaatatttattttgatttgtcagcactgtttttattggtttgttGGTACACTGCCAGTCACTGCTACCAATACTCATAAAgtatctaatttatttattggaattcattcagtttaatgtattttttttgtcattctccacaatatttgtaattttgctCAAGcgtttgtaaatatttacc

Function

NR:

description
neurogenic differentiation factor 4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001839 neural plate morphogenesis biological_process
GO:0071698 olfactory placode development biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09079 NEUROD4, ATOH3, MATH3; neurogenic differentiation factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225267.1 True 1981 mRNA 0.46 2 16341446 16344687

Neighbor

gene id symbol gene type direction distance location
znf385a LOC107695795,LOC107716219,LOC107586538,LOC107570601,LOC107708851,LOC107681944 coding downstream 9774 16259075 ~ 16331672 (-)
b4galnt1a b4galnt1a,LOC107708855,LOC107681939,LOC107586541,LOC107716216,LOC107570598,LOC107695798 coding downstream 106872 16222809 ~ 16234574 (-)
sp5l sp5l,LOC107708798,LOC107681947,LOC107695752,LOC107586542,LOC107571725,LOC108276147,LOC108432429 coding downstream 148768 16189431 ~ 16192678 (-)
ankrd33aa ankrd33aa,LOC107708858,LOC107570559,LOC107563641,LOC107716213,LOC107695800,LOC108433401 coding downstream 215035 16118392 ~ 16126411 (-)
acvrl1 acvrl1,LOC107695804,LOC107708857,LOC107570535,LOC107681938 coding downstream 226162 16102408 ~ 16115284 (-)
c1ql4a LOC107716093,LOC107708794,LOC107681949,LOC107571784,LOC107695791,LOC107586535 coding upstream 15002 16359689 ~ 16376808 (-)
tmem107l tmem107l,tmem107,LOC107571795,LOC107695749,LOC108433473,LOC107708779 coding upstream 55118 16399805 ~ 16401705 (-)
ribc1 LOC107681983,LOC107708847,LOC107570642,LOC107695788,LOC107586532,LOC107716094 coding upstream 143539 16488226 ~ 16505803 (-)
LOC122328366 LOC107708845,LOC107682000,LOC107570669,LOC107716098,LOC107695785,LOC107586560,LOC107586530 coding upstream 196827 16541514 ~ 16545688 (-)
LOC122328572 acvr1ba,LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107563637,LOC107695803 coding upstream 264791 16609478 ~ 16616339 (-)
G158333 NA non-coding downstream 94153 16247016 ~ 16247293 (-)
G158284 NA non-coding downstream 223232 16117881 ~ 16118214 (-)
G158282 NA non-coding downstream 239232 16101625 ~ 16102214 (-)
G158227 NA non-coding downstream 375683 15964753 ~ 15965763 (-)
G158208 NA non-coding downstream 528519 15812281 ~ 15812927 (-)
G158353 NA non-coding upstream 72238 16416925 ~ 16439280 (-)
G158377 NA non-coding upstream 79277 16423964 ~ 16424362 (-)
G158383 NA non-coding upstream 88274 16432961 ~ 16433629 (-)
G158388 NA non-coding upstream 99119 16443806 ~ 16444037 (-)
G158404 NA non-coding upstream 153682 16498369 ~ 16500850 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 98051 16240810 ~ 16243395 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 171612 16143833 ~ 16169834 (-)
G158231 NA other downstream 332531 16008106 ~ 16008915 (-)
LOC122329227 NA other downstream 624196 15621942 ~ 15717250 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other downstream 867056 15347417 ~ 15474390 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other upstream 10682 16355369 ~ 16358705 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 831938 17176625 ~ 17184385 (-)
G158609 NA other upstream 994580 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 1069016 17413703 ~ 17422517 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 1701239 18045926 ~ 18058739 (-)

Expression


Co-expression Network