LOC122329065


Basic Information

Item Value
gene id LOC122329065
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8554507 ~ 8557031 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225269.1
TACCGCTCTTCTCAGAGGTGACCAAAGGATCCGTGAGTGAATGTGATTCTGAAGTAAATATCACATCTTCTCCTGAGATGTGGCCGCTGTCTCAAGAGCCTGAACAATCTTCGTCATCATTGCCAAGATCAGAAAGCTTTTTTCCACTTGAGACGAGGCTTCGGAGATCACAGCACCTGTCGACTACCTCAGAATCCTCTCTGTCAAATTCACGAACAGGAGGCCAGAAAGTGGAACTCTGTGACTCTCCAAAACCAAGCCCATGGACAAGATCTTCTGCAGCACAGGAGCAGGAGCAATCCTCAGAGCTTCTGCCAACATCATCTCCTTCACTTCCAAAAaccaaattaaatcaaactctCTCAGGCTTCGAGGACCATATTTCCACTGTCAGCGTCTGTCCTGGTGGAATACCATCTGTTAGGTCTTCTCAATGTCATTCTCCTGCTTTTTTCATCTCTAAACAAAGTCCAAAACCTCCAGATTCTCTGTCCCCAAGGTCTAGATCAGTTTCTTCTCCAGTAAACCCAATCCTAACCAGACCTGCATATTCAACACATGCTGCTGAATCAAAATTATCTCAACTGTCTCCAGAACGTGCCATCACTTCCCCAAGCGCTGCAGTTCCTTCATTAAAGCTGTCACTTACAGAATCATCACAATCTGGATTAGTCTCAGATAGAAGTACATCTACGCCTATCATCAGGTCCTCTCTGCCTAGGGTCAAATCTTCTCATGCTGAGGATTATCATTCACCTCCGGCATCCAAATGGTTAAAAGGCTCACGGAGGTCACCCAAATCCACAGTGCTGTCTTTACAGCTGAGCATGTCAGATTCAGAGGAGGAAATGACAGGTGAAGATGCTTGCCTGGTGCCCAGTGAGGAAGACTCCTCTGATGAAGAGCTGAGACGAATCACGGATGCAGAAGAACAAAAGAATGGCTTTCCCTCTCCGTGCCCCACCGCGACCCCTCCGGCAGAGCCTCATATTACTTTCACAAACCTCTCAAAGTCCAAAAACGACAACACGGAACCAGACCTATTTACAGGATCTTCTCAGGTTATCAGAGACCGTTAGAATCCTCAACCTCAGTTACTTGTAACAG

Function

GO:

id name namespace
GO:0042440 pigment metabolic process biological_process
GO:0042168 heme metabolic process biological_process
GO:0046148 pigment biosynthetic process biological_process
GO:0033013 tetrapyrrole metabolic process biological_process
GO:0033014 tetrapyrrole biosynthetic process biological_process
GO:0006778 porphyrin-containing compound metabolic process biological_process
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0006783 heme biosynthetic process biological_process

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225269.1 True 1107 mRNA 0.47 2 8554507 8557031

Neighbor

gene id symbol gene type direction distance location
trnai-uau_41 NA coding downstream 348991 8205423 ~ 8205516 (-)
trnai-uau_40 NA coding downstream 349291 8205123 ~ 8205216 (-)
trnai-uau_39 NA coding downstream 349818 8204596 ~ 8204689 (-)
trnai-uau_38 NA coding downstream 350118 8204296 ~ 8204389 (-)
trnai-uau_37 NA coding downstream 351585 8202829 ~ 8202922 (-)
casz1 casz1,LOC107708843,LOC107586525 coding upstream 142794 8699825 ~ 8777258 (-)
pgd pgd,LOC107681986,LOC107586524,LOC107716232,LOC107695776,LOC107570752,LOC107708839 coding upstream 370472 8927503 ~ 8933579 (-)
kif1b kif1b,LOC107681965,LOC107695777,LOC107716234,LOC106522667 coding upstream 377449 8934480 ~ 8997506 (-)
ube4b ube4b,LOC107570768,LOC107681967,LOC107718816,LOC107586519,LOC107695775 coding upstream 442295 8999326 ~ 9018982 (-)
LOC122328502 rbp7a,nmnat1-rbp7a,LOC107708837,LOC107681992,LOC107695774,LOC107586559,LOC107580544 coding upstream 462495 9019526 ~ 9021081 (-)
G155803 NA non-coding downstream 21580 8526402 ~ 8532927 (-)
G155759 NA non-coding downstream 171900 8307279 ~ 8382607 (-)
G155737 NA non-coding downstream 376989 8176699 ~ 8177518 (-)
G155698 NA non-coding downstream 581182 7973103 ~ 7973325 (-)
G155669 LOC107747485,LOC107707759,LOC107559486,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 non-coding downstream 702256 7819746 ~ 7852251 (-)
G155825 NA non-coding upstream 67895 8624926 ~ 8625642 (-)
G155933 NA non-coding upstream 71668 8628699 ~ 8629103 (-)
LOC122329247 NA non-coding upstream 513353 9070384 ~ 9072944 (-)
G155968 NA non-coding upstream 596049 9153080 ~ 9153502 (-)
G155979 NA non-coding upstream 631482 9188513 ~ 9188897 (-)
G155807 NA other downstream 2530 8545394 ~ 8551977 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other downstream 1276184 7276448 ~ 7278323 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other downstream 1550984 6994167 ~ 7003523 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other downstream 1572546 6964742 ~ 6981961 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other downstream 1687207 6858007 ~ 6867300 (-)
G155827 NA other upstream 68727 8625758 ~ 8628391 (-)
c23h1orf127 LOC107708840,LOC107570680 other upstream 356031 8913062 ~ 8919770 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other upstream 364533 8921564 ~ 8926751 (-)
ctnnbip1 ctnnbip1 other upstream 522501 9079532 ~ 9097302 (-)
ccdc187 LOC107708822,LOC107570908,LOC107718813,LOC107656553,LOC107695760,LOC107586514 other upstream 638279 9195310 ~ 9209964 (-)

Expression


Co-expression Network