pgd (pgd,LOC107681986,LOC107586524,LOC107716232,LOC107695776,LOC107570752,LOC107708839)


Basic Information

Item Value
gene id pgd
gene name pgd,LOC107681986,LOC107586524,LOC107716232,LOC107695776,LOC107570752,LOC107708839
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8927503 ~ 8933579 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225279.1
GTTCATTGGGAGTTGAAGTAGTTCTGCTGCTCGGGCCGTGAATGAGGAAGTTCAGCAGAGACGGTGCTGCAGTACTCAATACCCTGATTCAAAGTGTCATTTTAAGACGGAACAAACCTTTAACCATGGCTCAAGCTGATATTGCTCTCATTGGTCTGGCCGTGATGGGTCAGAATCTGATCCTGAACATGAATGACCACGGGTTTGTGGTCTGCGCGTTCAACAGGACAGTGTCTAAGGTCCATGACTTTTTAAACAATGAAGCCAAAGGCACTAAGGTGATCGGGGCAGAGTCCCTTGAAGACATGGTGTCTAAACTCAAAAAACCTCGTCGCATTATCCTCCTGGTCAAAGCAGGACAAGCTGTCGATGACTTCATTGATAAACTGGTTCCTCTTCTTGAACCCGGTGACATTATCATTGATGGTGGAAATTCAGAGTACAGAGATACGACTAGACGCTGTAAGAGCCTGAAGGAGAAGAGCCTTCTGTTTGTGGGAAGTGGAGTGAGTGGAGGAGAAGACGGGGCTCGTCACGGACCCTCGCTGATGCCTGGAGGACATAAGAATGCCTGgccacacataaaaaatatttttcagagcATTGCCGCCAAGGTGGGCACAGGAGAGCCGTGCTGTGATTGGgTAGGAGATGAAGGAGCTGGACATTTTGTTAAGATGGTCCATAACGGTATTGAATACGGTGACATGCAGCTGATCTGTGAGGCCTACCATCTGATGAAGGATGTGCTGTGTATGGACCATGATGAAATGGCTCAGGCCTTCGATCAGTGGAATAAGACGGAACTGGACTCTTTTCTCATTGAGATCACTGCCAATATCCTGAAATTCAAGGACGAGGATGGCACTAACCTGCTGCCCAAAATCAGAGACAGCGCTGGGCAAAAAGGCACAGGGAAATGGACGGCTATCTCCGCTTTGGAGTACGGCACACCTGTTACACTGATAGGGGAAGCTGTCTTTGCCAGATGTCTCTCCTCTCTGAAGGACGAGAGGGTTCAGGCCAGTAAGAGCCTCACCGGCCCCCAGGGTGTCAAGTTCACCGGAAACAAGGCACAGTTTCTTGAGGATATCAGAAAGGCTTTGTACGCCTCAAAAATCATTTCATATGCTCAAGGCTTCATGCTGCTCAGACAAGCTGCAGTAGAGTTCGGCTGGTCTCTTAACTATGGTGCTATTGCCCTGATGTGGAGAGGAGGCTGCATTATTCGCAGTGTTTTCTTGGGAAAGATCAAGGAAGCGTTTGACCGGAACTCCGAGCTGCAGAGTTTGCTGCTGGATAACTTCTTCAGTAAAGCTGTACAGGATTGTCAGGAATCGTGGCGTAGGGTAGTAAGTACCGGTGTGCAGCAGGGGATCCCCATGCCGTGCTTCACCACTGCCCTGTCCTTCTATGACGGTTACAGGCACGAGATGCTCCCAGCAAACCTGCTGCAGGCACAGAGGGACTACTTCGGTGCCCACACGTATGAGCTGCTATCAAACCCTGGAAAGTTCATCCACACTAACTGGACAGGTCACGGAGGAAAGGTGTCGTCGTCATCCTACAACGCCTAAAGTCAGTGGTATTAGGTTAAACAGCAAAGAAACCCCATCTCTTCTTGATGAAGGACCAGAGCAGCTGAATACATTCCTCCTGAACATTTGAACTTCAGCCCAAGAGTGTTCAAAtgcatatttctatttatactAAATCATAGTGTATGCACTATTTGTAAGCTCTGTTCTTGTAGTTTTAAGGTCCACCGTTGCAAACACTGAATTTTTGATTTaggagttgttgtttttgaggttCTTCTTGCTGTAGACCGGCCATGCTTTGCCCCCGGAGTTCACGGTGTTAACTCTGGATTATGGGTAACTATTGCACTGCATTAGGCTAAATAAAGATTTCAATCcctttttaa

Function

symbol description
pgd Predicted to enable NADP binding activity and phosphogluconate dehydrogenase (decarboxylating) activity. Predicted to be involved in D-gluconate catabolic process and pentose-phosphate shunt, oxidative branch. Predicted to act upstream of or within D-gluconate metabolic process and pentose-phosphate shunt. Predicted to be active in cytosol. Is expressed in several structures, including axis; chordo neural hinge; digestive system; sensory system; and solid lens vesicle. Orthologous to human PGD (phosphogluconate dehydrogenase).

NR:

description
6-phosphogluconate dehydrogenase, decarboxylating

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0050661 NADP binding molecular_function
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity molecular_function

KEGG:

id description
K00033 PGD, gnd, gntZ; 6-phosphogluconate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225279.1 True 1927 mRNA 0.48 13 8927503 8933579

Neighbor

gene id symbol gene type direction distance location
casz1 casz1,LOC107708843,LOC107586525 coding downstream 150245 8699825 ~ 8777258 (-)
LOC122329065 NA coding downstream 370472 8554507 ~ 8557031 (-)
trnai-uau_41 NA coding downstream 721987 8205423 ~ 8205516 (-)
trnai-uau_40 NA coding downstream 722287 8205123 ~ 8205216 (-)
trnai-uau_39 NA coding downstream 722814 8204596 ~ 8204689 (-)
kif1b kif1b,LOC107681965,LOC107695777,LOC107716234,LOC106522667 coding upstream 901 8934480 ~ 8997506 (-)
ube4b ube4b,LOC107570768,LOC107681967,LOC107718816,LOC107586519,LOC107695775 coding upstream 65747 8999326 ~ 9018982 (-)
LOC122328502 rbp7a,nmnat1-rbp7a,LOC107708837,LOC107681992,LOC107695774,LOC107586559,LOC107580544 coding upstream 85947 9019526 ~ 9021081 (-)
nmnat1 nmnat1 coding upstream 89429 9023008 ~ 9026430 (-)
clstn1 clstn1,LOC107718806,LOC107681971 coding upstream 96141 9029720 ~ 9062901 (-)
G155933 NA non-coding downstream 298400 8628699 ~ 8629103 (-)
G155825 NA non-coding downstream 301861 8624926 ~ 8625642 (-)
G155803 NA non-coding downstream 394576 8526402 ~ 8532927 (-)
G155759 NA non-coding downstream 544896 8307279 ~ 8382607 (-)
G155737 NA non-coding downstream 749985 8176699 ~ 8177518 (-)
LOC122329247 NA non-coding upstream 136805 9070384 ~ 9072944 (-)
G155968 NA non-coding upstream 219501 9153080 ~ 9153502 (-)
G155979 NA non-coding upstream 254934 9188513 ~ 9188897 (-)
G156051 LOC107708813,LOC107656547,LOC107571009,LOC107756377 non-coding upstream 668383 9601962 ~ 9602477 (-)
G156054 NA non-coding upstream 673909 9607488 ~ 9607948 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other downstream 752 8921564 ~ 8926751 (-)
c23h1orf127 LOC107708840,LOC107570680 other downstream 7733 8913062 ~ 8919770 (-)
G155827 NA other downstream 299112 8625758 ~ 8628391 (-)
G155807 NA other downstream 375526 8545394 ~ 8551977 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other downstream 1649180 7276448 ~ 7278323 (-)
ctnnbip1 ctnnbip1 other upstream 145953 9079532 ~ 9097302 (-)
ccdc187 LOC107708822,LOC107570908,LOC107718813,LOC107656553,LOC107695760,LOC107586514 other upstream 261731 9195310 ~ 9209964 (-)
hmgn3 hmgn3,LOC107756386,LOC107671890 other upstream 868206 9801785 ~ 9808369 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other upstream 898230 9831809 ~ 9833682 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other upstream 1284894 10218473 ~ 10385967 (-)

Expression


Co-expression Network