emc1 (emc1,LOC107593385,LOC107591116)


Basic Information

Item Value
gene id emc1
gene name emc1,LOC107593385,LOC107591116
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12441056 ~ 12449532 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225281.1
CGAACAGCATTGTGGGAGTTGTTCCTCTGCAGCAATGGCTTGGCTTGTAGTAAGATTAGCAATATCTGTGTCTTTATTATATACTGCATCGGCGGTATTTGAAGACCAAGTTGGAAAGTTTGATTGGAGGCAACAGTTTATCGGCAAGGTGCGTTTTGCGTTGTTTGACACTCATTCTCAAGCGTCTAAAAAGCTTCTGGTGGCAACCGACAAGAACGTGTTTGCTTCCCTCAATTCAAGGACTGGAGACCTGTTCTGGCGGCATGTGGATAAGACTGGACCAGAGGGCCATATTGATGTACTGCTTATGTATGGGCAGGatgctgttgttgttgtgggaAATGGCCGTCTACTCCGCTCCTGGGAGACCACAGTTGGCGGCTTGAAGTGGGAGACGGTTCTTGATACGGGAAGCTTCCAGGCTGCTGCTTTCGTTGGAGTTCAAGACCTTGTGAAGTATGTTGCTGTGCTGAAGAAATCAGCAATCTCGCTCCATGACCTTTCAAGTGGAAGTCAGATATGGGTAGAAAACCTACCTGACAGTGACAATGTTCAGTATCAAACTATTTATTCTGGTGGGAATGGActggtgtttgtttttggagtCGTGCCAAACTCTCATATCGTTATTGTTGAATACAAAATTGAAGATGGGGAAATCATGAACAAGaaatcaGTTGAAGCTGCGTGGATGTCAAGCCTGGAGAGTAGCTGTACGGTGATTGGCTCAGGGGTTCTTTTGTGTGTGGATCAGATCACACAGTCCCTGTATACCCTACAGCTGCAGTCTGCAGAACAGACAGAAATGAGACAGATCCACCTCCAGACTCTAGATTTGGAGGTGGCGTCGGGGTTCCAGCCTGTTCTGACATCCACTCAACCCAATCCAGCACAGCCTCCTCTATCTGAGTTCTTCCTGCAGCTCAGTCCAGAACATCACCTCTTGCTGCAACTCAAAGACGGCCTCATCGCTCCTCTCAGAGACTTCAATCCATCATATCTGGCAGCTTTTGCCACGTCTGGAGAGAGGACAGTTGCTGCTGTGATGTCCCCAAAGAATGATACCGCTTGCAGCATCAACTTGTTCAGTGCTGACACAGGGAGGAGGCACCTTGACACCACCATTATCTACCACATGGACCCTAATGGAGGAAAGCCAAACAGAttatatgTCCATGCTTTTCTGAAGAAAGATGATTCTGTTGGCTACAGAGTCATGGTGCAGACGGAAGATCTTACACTCACATTCCTGCAGCAACCTGGTAGGGTGGTCTGGATGAGGGAGGAGGCCCTGGCTGATGTGGTCACGATGGAGATGGTTGACCTGCCATTCACTGGAACACAGGCAGAACTGGAGGGAGAGTTCGGAAAGAAAGCTGCCATTCAAGATGGGCTGTTACCCATGGTCCTCAAGCGCCTCTCTTCCCAGTTCATTTTGCTGCAGGCATGGCTGGCTCATCTCTGGAAACTCTTTTATGATGCCCGGAAGCCCCGAAGCAGTGTCAAGAATGAGGTCACCATAGACACACTGTCTCGGGATGAATTCAACCTGCAGAAGATGATGGTGATGGTAACTGCCTCTGGGAAGCTTTTTGGCATCGACAGTAAATCAGGAACGATTTTGTGGAAGCAGTATTTAGAAAACATCCAGCCCAACTCTGTTTTCAAACTCATTGTTCAGAGGACCACTGCTCACTTTCCTCATCCACCACAGTGCACACTTCTTATAAAAAGCAAGGACACAGGTCTTGGAAGCCTCTATGTCTTCAATCCTATCTTTGGCAAGAAGAGTCAAATTAGTGTCCCTGCCTTACCCAGACCTGTCCTTCAGACCCTGCTGCTGCCTGTCATTGACCAGGACTATGCTAAAGTCCTTTTACTCATTGATGACCAGTACAAGGTCACCGCATTTCCATCTACAAAGAACGTTCTACAGCAGCTTCAGGACTCAGCATCCTCTATATTCTTCTACCTAGTGGATTCTAGTCAGGGAAAACTGTCGGGTTTCCGTCTGCGCAAGGACTTGTCTACAGAGCTAATCTGGGAGGTGGCCATCCCTACTGAGGTGCAGAAGATAGTGGCTGTCAAAGGAAAGCGTGCAAATGAACATGTCCATTCCCAGGGCAGAGTCATGGGGGATCGTAGTGTGCTCTACAAGTATCTGAACCCTAATCTCTTGGCTGTAATAACGGAAAGCACAGACACCCATCAGGAGCGGAGCTTTGTTGGAATCTTCCTGATTGATGGTGTCACTGGCCGTAGTGTGCATGAAGCGGTGCAGCGGAAAGCCAGGGGGCCTGTTCACTTTGTACACTCTGAAAACTGGATGGTGTATGTGTACTGGAACTCCAAGTTTCGCAGAAATGAGTTTTCTGTGTTGGAGCTCTTTGAGGGAGCGGAGCTCTACAACAGCACAGTGTTCAGCTCCCTGGACAGACCACATCCACCTCAGGTTTTGCAGCAGTCATACATTTTTCCTGCTCCCATAAGCACTTTGGAAGCTACACTTACGGAAAAGGGCATCACCAGCCGACACCTTCTTGTCGGGCTGCCATCAGGCAACATTTTATCCTTACCAAAGATGTTTTTGGACCCTCGGAGACCAGAGGTAGTCTCGGAACAGAGTCGGGAAGAAAACCTTATACCATATGCTCCAGAAATGCCTATTCGTGAAGAATGGTTTGTAAACTATAACCAAACTGTGTCAAGAGTAAGGGGTATTCACACTGCCCCCTCTGGCCTGGAGTCTACCTGTTTGGTGGTCGCATATGGTCTTGACATCTACCAGACCAGAGTGTTTCCCTCCAAGCAATTTGATGTCCTTAAGGATGACTATGACTATGTATTAATCAGCAGCGTACTCTTTGGCCTCTTCTTTGCCACCATGATCAGCAAACGTCTAGCGGAAGTGAAACTGCTCAATAGGGCATGGCGATAAGACTCATCCTAAAGGCCTGCTGACTTCACTCTCGCCCTCACTGCAATGTGGTCGACACATTGATTGCAGGAGACTAGCTGGTGACCATGTCAAAACTGCAAGATCATTTGATAAGTTTGGTGTATTTTTGCAACCAGCTGTCTTAGAGATCTTGTGGTGTTTTGAGTGTAAGTGCATAGATGGCCATGATAGTTTTTCCCTTTTCAGAGAGAGAAGTAATGACCccccccccaccaccaccaTAGCATTGAACAACTCGctgtctaatttatttattgtgcctTTCGGGGTAACATAATTCATGTGATTAACAGGTAGACTTGCCAGGTATAACATAATAATTGTCccatttatttctgtcattttttttccattatagATTTAGTTGGAGTCTGCCTTTTgaagaaattgttttttttggtttttatgaaTATCGAGGGAAGGAGTATTGCAAAAGGactgccatttttatttaaatcaatgaaaagATTGTGATTGGGTTTTAAATTTGATATGATCTGGTTAGTGGTTACGGAATATATTGCCTGGCATACAGGATTTGAATGGGCAAACACTAGTGCACATGAGAACTGTGAAATTGTTTTCTCCTGTACATTAATGATAAAAGGTTCTGCATAGGAGTTTGGATAGtcttttgtagttattttatgGTATGTCAAATGCACTGGATGGTTTGGAGCCATGTTCTTACTTGATATATTTATGAACAAGATCCTAATATGCCATATCATACTTTGATTTTGACTTGTACACATTACAAATCCTTGTGATTTTACTATTGTGTAAAATGTTTCTACTCTTTTGATTTTCATGAATAATAGGCctgtttatatacataattttaaaagcatCCCCACTGCTGCAAATTAATGAtgtcaaggaaaaaaaaaaagtttaataatatttgtaacaagagtagatatttaaatattaagttgGTAACAaactgaatgctttttttttttttttttaaacatgcataaattatTTCTTTCCCCCCTAATCAATAATAAAGAATATCCCCTTCCTAATTGTT
>XM_043225282.1
GGGAGTTGTTCCTCTGCAGCAATGGCTTGGCTTGTAGTAAGATTAGCAATATCTGTGTCTTTATTATATACTGCATCGGCGGTATTTGAAGACCAAGTTGGAAAGTTTGATTGGAGGCAACAGTTTATCGGCAAGGTGCGTTTTGCGTTGTTTGACACTCATTCTCAAGCGTCTAAAAAGCTTCTGGTGGCAACCGACAAGAACGTGTTTGCTTCCCTCAATTCAAGGACTGGAGACCTGTTCTGGCGGCATGTGGATAAGACTGGACCAGAGGGCCATATTGATGTACTGCTTATGTATGGGCAGGatgctgttgttgttgtgggaAATGGCCGTCTACTCCGCTCCTGGGAGACCACAGTTGGCGGCTTGAAGTGGGAGACGGTTCTTGATACGGGAAGCTTCCAGGCTGCTGCTTTCGTTGGAGTTCAAGACCTTGTGAAGTATGTTGCTGTGCTGAAGAAATCAGCAATCTCGCTCCATGACCTTTCAAGTGGAAGTCAGATATGGGTAGAAAACCTACCTGACAGTGACAATGTTCAGTATCAAACTATTTATTCTGGTGGGAATGGActggtgtttgtttttggagtCGTGCCAAACTCTCATATCGTTATTGTTGAATACAAAATTGAAGATGGGGAAATCATGAACAAGaaatcaGTTGAAGCTGCGTGGATGTCAAGCCTGGAGAGTAGCTGTACGGTGATTGGCTCAGGGGTTCTTTTGTGTGTGGATCAGATCACACAGTCCCTGTATACCCTACAGCTGCAGTCTGCAGAACAGACAGAAATGAGACAGATCCACCTCCAGACTCTAGATTTGGAGGTGGCGTCGGGGTTCCAGCCTGTTCTGACATCCACTCAACCCAATCCAGCACAGCCTCCTCTATCTGAGTTCTTCCTGCAGCTCAGTCCAGAACATCACCTCTTGCTGCAACTCAAAGACGGCCTCATCGCTCCTCTCAGAGACTTCAATCCATCATATCTGGCAGCTTTTGCCACGTCTGGAGAGAGGACAGTTGCTGCTGTGATGTCCCCAAAGAATGATACCGCTTGCAGCATCAACTTGTTCAGTGCTGACACAGGGAGGAGGCACCTTGACACCACCATTATCTACCACATGGACCCTAATGGAGGAAAGCCAAACAGAttatatgTCCATGCTTTTCTGAAGAAAGATGATTCTGTTGGCTACAGAGTCATGGTGCAGACGGAAGATCTTACACTCACATTCCTGCAGCAACCTGGTAGGGTGGTCTGGATGAGGGAGGAGGCCCTGGCTGATGTGGTCACGATGGAGATGGTTGACCTGCCATTCACTGGAACACAGGCAGAACTGGAGGGAGAGTTCGGAAAGAAAGCTGATGGGCTGTTACCCATGGTCCTCAAGCGCCTCTCTTCCCAGTTCATTTTGCTGCAGGCATGGCTGGCTCATCTCTGGAAACTCTTTTATGATGCCCGGAAGCCCCGAAGCAGTGTCAAGAATGAGGTCACCATAGACACACTGTCTCGGGATGAATTCAACCTGCAGAAGATGATGGTGATGGTAACTGCCTCTGGGAAGCTTTTTGGCATCGACAGTAAATCAGGAACGATTTTGTGGAAGCAGTATTTAGAAAACATCCAGCCCAACTCTGTTTTCAAACTCATTGTTCAGAGGACCACTGCTCACTTTCCTCATCCACCACAGTGCACACTTCTTATAAAAAGCAAGGACACAGGTCTTGGAAGCCTCTATGTCTTCAATCCTATCTTTGGCAAGAAGAGTCAAATTAGTGTCCCTGCCTTACCCAGACCTGTCCTTCAGACCCTGCTGCTGCCTGTCATTGACCAGGACTATGCTAAAGTCCTTTTACTCATTGATGACCAGTACAAGGTCACCGCATTTCCATCTACAAAGAACGTTCTACAGCAGCTTCAGGACTCAGCATCCTCTATATTCTTCTACCTAGTGGATTCTAGTCAGGGAAAACTGTCGGGTTTCCGTCTGCGCAAGGACTTGTCTACAGAGCTAATCTGGGAGGTGGCCATCCCTACTGAGGTGCAGAAGATAGTGGCTGTCAAAGGAAAGCGTGCAAATGAACATGTCCATTCCCAGGGCAGAGTCATGGGGGATCGTAGTGTGCTCTACAAGTATCTGAACCCTAATCTCTTGGCTGTAATAACGGAAAGCACAGACACCCATCAGGAGCGGAGCTTTGTTGGAATCTTCCTGATTGATGGTGTCACTGGCCGTAGTGTGCATGAAGCGGTGCAGCGGAAAGCCAGGGGGCCTGTTCACTTTGTACACTCTGAAAACTGGATGGTGTATGTGTACTGGAACTCCAAGTTTCGCAGAAATGAGTTTTCTGTGTTGGAGCTCTTTGAGGGAGCGGAGCTCTACAACAGCACAGTGTTCAGCTCCCTGGACAGACCACATCCACCTCAGGTTTTGCAGCAGTCATACATTTTTCCTGCTCCCATAAGCACTTTGGAAGCTACACTTACGGAAAAGGGCATCACCAGCCGACACCTTCTTGTCGGGCTGCCATCAGGCAACATTTTATCCTTACCAAAGATGTTTTTGGACCCTCGGAGACCAGAGGTAGTCTCGGAACAGAGTCGGGAAGAAAACCTTATACCATATGCTCCAGAAATGCCTATTCGTGAAGAATGGTTTGTAAACTATAACCAAACTGTGTCAAGAGTAAGGGGTATTCACACTGCCCCCTCTGGCCTGGAGTCTACCTGTTTGGTGGTCGCATATGGTCTTGACATCTACCAGACCAGAGTGTTTCCCTCCAAGCAATTTGATGTCCTTAAGGATGACTATGACTATGTATTAATCAGCAGCGTACTCTTTGGCCTCTTCTTTGCCACCATGATCAGCAAACGTCTAGCGGAAGTGAAACTGCTCAATAGGGCATGGCGATAAGACTCATCCTAAAGGCCTGCTGACTTCACTCTCGCCCTCACTGCAATGTGGTCGACACATTGATTGCAGGAGACTAGCTGGTGACCATGTCAAAACTGCAAGATCATTTGATAAGTTTGGTGTATTTTTGCAACCAGCTGTCTTAGAGATCTTGTGGTGTTTTGAGTGTAAGTGCATAGATGGCCATGATAGTTTTTCCCTTTTCAGAGAGAGAAGTAATGACCccccccccaccaccaccaTAGCATTGAACAACTCGctgtctaatttatttattgtgcctTTCGGGGTAACATAATTCATGTGATTAACAGGTAGACTTGCCAGGTATAACATAATAATTGTCccatttatttctgtcattttttttccattatagATTTAGTTGGAGTCTGCCTTTTgaagaaattgttttttttggtttttatgaaTATCGAGGGAAGGAGTATTGCAAAAGGactgccatttttatttaaatcaatgaaaagATTGTGATTGGGTTTTAAATTTGATATGATCTGGTTAGTGGTTACGGAATATATTGCCTGGCATACAGGATTTGAATGGGCAAACACTAGTGCACATGAGAACTGTGAAATTGTTTTCTCCTGTACATTAATGATAAAAGGTTCTGCATAGGAGTTTGGATAGtcttttgtagttattttatgGTATGTCAAATGCACTGGATGGTTTGGAGCCATGTTCTTACTTGATATATTTATGAACAAGATCCTAATATGCCATATCATACTTTGATTTTGACTTGTACACATTACAAATCCTTGTGATTTTACTATTGTGTAAAATGTTTCTACTCTTTTGATTTTCATGAATAATAGGCctgtttatatacataattttaaaagcatCCCCACTGCTGCAAATTAATGAtgtcaaggaaaaaaaaaaagtttaataatatttgtaacaagagtagatatttaaatattaagttgGTAACAaactgaatgctttttttttttttttttaaacatgcataaattatTTCTTTCCCCCCTAATCAATAATAAAGAATATCCCCTTCCTAATTGTT

Function

symbol description
emc1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of EMC complex. Orthologous to human EMC1 (ER membrane protein complex subunit 1).

NR:

description
PREDICTED: ER membrane protein complex subunit 1 isoform X1

GO:

id name namespace
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG:

id description
K23562 EMC1; ER membrane protein complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225281.1 True 3995 mRNA 0.44 23 12441056 12449532
XM_043225282.1 False 3973 mRNA 0.44 22 12441069 12449532

Neighbor

gene id symbol gene type direction distance location
kcnab2b kcnab2b,LOC107687393,LOC105894315,LOC107712982,LOC107672035,LOC107737578,LOC108434650,LOC108276490 coding upstream 56945 12332606 ~ 12384111 (+)
pax7b pax7b,LOC107672046,LOC107593389,LOC107687391,LOC107565832 coding upstream 129802 12252725 ~ 12311254 (+)
zgc:154075 zgc:154075,LOC107712677,LOC107699610,LOC107593441,LOC108434639 coding upstream 205079 12229968 ~ 12235977 (+)
ttc34 ttc34,LOC107671969,LOC107737580,LOC107565827 coding upstream 212729 12221793 ~ 12228327 (+)
si:ch211-112c15.8 NA coding upstream 220120 12213370 ~ 12220936 (+)
ubr4 ubr4,LOC107687395 coding downstream 738 12450270 ~ 12490854 (+)
iffo2a LOC107737575,LOC107712691,LOC107703080,LOC107591153,LOC107593384,LOC107687398 coding downstream 42334 12491866 ~ 12509002 (+)
LOC122329206 tas1r1,LOC107593439,LOC107712676,LOC107687455 coding downstream 60699 12510231 ~ 12515171 (+)
LOC122328350 LOC107712654,LOC107737705,LOC107703076,LOC107712673,LOC107593382,LOC107593415,LOC107687469 coding downstream 74939 12524471 ~ 12525910 (+)
draxinb LOC107703074,LOC107591150,LOC107737703,LOC107712672,LOC107593437,LOC107687472 coding downstream 87166 12536698 ~ 12541914 (+)
G157084 NA non-coding upstream 54675 12353090 ~ 12386381 (+)
G157081 NA non-coding upstream 194955 12245874 ~ 12246101 (+)
G157079 NA non-coding upstream 199655 12239849 ~ 12241401 (+)
G156931 NA non-coding upstream 235661 12204256 ~ 12205395 (+)
G156933 NA non-coding upstream 266141 12174530 ~ 12174915 (+)
G157265 NA non-coding downstream 279512 12729044 ~ 12787715 (+)
G157294 NA non-coding downstream 403709 12853241 ~ 12853832 (+)
G157317 NA non-coding downstream 540269 12989801 ~ 13040412 (+)
G157326 NA non-coding downstream 656928 13106460 ~ 13106957 (+)
G157329 NA non-coding downstream 665426 13114958 ~ 13115174 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 189074 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 694486 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 708695 11730980 ~ 11732361 (+)
G156586 NA other upstream 1264023 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 1355452 11077154 ~ 11085604 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 1644546 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 1850169 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2154261 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 2159997 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 2231328 14680860 ~ 14686618 (+)

Expression


Co-expression Network