nsfl1c (nsfl1c,LOC107737635,LOC107560918,LOC107741325,LOC107562467,LOC107657023)


Basic Information

Item Value
gene id nsfl1c
gene name nsfl1c,LOC107737635,LOC107560918,LOC107741325,LOC107562467,LOC107657023
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11390561 ~ 11395473 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225286.1
CGTTCGTTTGCCCGTTTCCTGCCGGATCTTTCCTGCGCGTGACACGTTAAAATGGCGGAGCGGGAAGAAGCGGTGAGGGGATTCGTCGCTGTTACTGATGTTGATGAAGAGAGGGCCCGTTTCTTCCTCGAGTCAGCCGGCTGGGACCTACAGCTTGCTTTAGCTAATTTCTTTGAAGATGGAGGAGATGACGATATCGCCACCCTCCCTCAGCCAGAGTCTGGCTCGGTCAGTCGATCCACGGGGCCAAGTGAACACAGAGTGACGTCCTTCAGAGATCTTATGCATGAGGATGAAGATGACAGTGGCGACGAGGAAGGCCAAAGGTTCTTTGCCGGGGGTTCAGAACGCAGTGGGCAGCAGATTGTTGGTCCTCCCAAAAAGAAGAGCTCAAATGAGCTGGTCGAGGACTTGTTTAAAGGTGCTAAGGAGCACGGGGCGGTTCCTGTTGACAGACCAGGCAAGGGACCTGGAGAATCCAGCAAATCCAGCAGGCCGTTTGTGGGTGGTGGCTATCGATTGGGTGCAGCGCCAGAGGAAGAGTCTGCTTATGTGGCAGGAGACAGGAGACAGTCCAGCAGTGCACAAGATGTGCATGTGGTGCTGAAGCTCTGGAAGACTGGCTTTAGTCTTGACGAGGGGGAGCTGAGGAACTACAGTGATCCTGGGAACGCTCTCTTCCTGGAGTCGATCCGCAGAGGGGAGATCCCTCTCGAGCTGAGACAGCGTTTCCGGGGGGGACAGGTAAACCTAGACATGGAGGACCATCGGGATGAAGATTTTTCCAAACCTAAACCTGTTTTCAAGGCCTTTACTGGAGAAGGACAGAAACTTGGCAGTGCCACTCCAGAGCTGGTGTCGCTCCAGAGAAGCCCTCAGGACCAGGCCGCCAGCGAAGCTGAGGCTAGTGCTTCCATCAGCGTGGACAGCTCTCAACCTGTCACTAGCATCCAGATCAGACTGGCTGACGGAGGCCGCCTGGTGCAGAAGTTCAACCACACCCACAGGGTGTCTGATGTGCGTCAGTTTGTGGCGAGCGCTCGCCCAGCTTTAGCTGCCACCGAGTTTGTTCTCATGACAACTTTCCCCAACAAGGAGCTGACGGACGAGGGCCAGACGCTGAAGGAAGCCAACCTGCTGAACGCCGTCATCGTGCAGCGGCTAAAGTGATCGCTGAGCGGGCTTTATTACAGCACTCTGGAGATCCGGGGACTGAAAGGACTTCTAATtacttaattttgttttctttagtgATATGTTATTCCTCTGTGACAGTTTTGGGGTGGTGGGTGTTCCTGATAAAGAGAAAATGGAGATGAAGGGGAAGCAGTCACACTGTGATACAGttaaagagagggagagaggaaacCAAGAGAAGAACTAACGAGTTTTATGGTTTTAGAATAACTGCTGAACATATTCAGATCGAAATAAAGAGCTTTCTGAAGAGTTTTGACATCCTTTTACCTCGGTGTCTATCTTGCAGCTTTACGCTGCTTCGCTTTACCTCCTCAGTTTTATTCCTCGTTCTGTGATTCATCTCTTAATATTTCTCAGAACTGTCATTTAAACTAAAGTAGCCTTATATTCTAGCCCCATGACCAAGATCAACCTCAACTGTCAAtgatcaaaactttttttttttgtttttctttttttacaaaacaatctTTATTTTATGACGTTTGAggctttattttgttatttaggTTGTCAcactatattaatttttttattattatatttttcctgGTTATTAAAGAATGGAATTATGAATTGGTTGATTAAGAGCCAACTTCAATTTTGGACACTGCTGCTGGTGAACATATCAGTGGCCTTCTTGTATTCTATGCAGAAGCGTACTATAATTCTGGAGATATTGTGTGATTGTGAGCTGTGGTGAACCTGATATTAAATCCCTTTGTCTGGCA

Function

symbol description
nsfl1c Predicted to enable ubiquitin binding activity. Predicted to be involved in several processes, including autophagosome assembly; nuclear membrane reassembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in Golgi stack. Predicted to be active in cytosol and nucleus. Orthologous to human NSFL1C (NSFL1 cofactor).

NR:

description
PREDICTED: NSFL1 cofactor p47 isoform X1

GO: NA

KEGG:

id description
K14012 NSFL1C, UBX1, SHP1; UBX domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225286.1 True 1931 mRNA 0.48 9 11390561 11395473

Neighbor

gene id symbol gene type direction distance location
trpc4apb trpc4apb,LOC107737634,LOC107560917,LOC107672047,LOC107741324,LOC107562468 coding downstream 3838 11379548 ~ 11386723 (-)
zgc:103759 zgc:103759,LOC107737722,LOC107562457,LOC107657028,LOC107741343 coding downstream 33882 11354880 ~ 11356679 (-)
arhgap4b arhgap4b,LOC107560914,LOC107737637,LOC107672018,LOC107741320,LOC107657026 coding downstream 39122 11325493 ~ 11351439 (-)
zgc:158296 LOC107737724,LOC107671977,LOC107562459,LOC107657001,LOC107741322 coding downstream 65685 11322655 ~ 11324876 (-)
ikbkg LOC107737639,LOC107672044,LOC107741321,LOC107657029 coding downstream 68699 11314705 ~ 11321862 (-)
wu:fa11c10 wu:fa11c10,LOC107672043,LOC107737632,LOC107560922,LOC107562466,LOC107741327,LOC107657022 coding upstream 16411 11411884 ~ 11428747 (-)
bcl2l1 bcl2l1,LOC107560925,LOC107737630,LOC107671991,LOC107741328,LOC107657020,LOC107576469 coding upstream 51526 11446999 ~ 11464910 (-)
arfgef2 arfgef2,LOC107671990,LOC107737629,LOC107562465,LOC107741338,LOC108436330 coding upstream 70883 11466356 ~ 11488430 (-)
pard6b pard6b,LOC107737628,LOC107560924,LOC107657018,LOC107712746,LOC107562464,LOC108436329,LOC107671939 coding upstream 94693 11490166 ~ 11507285 (-)
LOC122328724 ebp,LOC107672060,LOC107712744,LOC107657016 coding upstream 120664 11516137 ~ 11517702 (-)
LOC122328925 NA non-coding downstream 13873 11376177 ~ 11376688 (-)
G156785 NA non-coding downstream 36733 11353159 ~ 11353828 (-)
G156762 NA non-coding downstream 145741 11242600 ~ 11244820 (-)
G156759 NA non-coding downstream 227542 11162664 ~ 11163019 (-)
G156726 LOC107737655 non-coding downstream 314600 11071410 ~ 11075961 (-)
G156812 NA non-coding upstream 144150 11539623 ~ 11540045 (-)
G156962 NA non-coding upstream 366967 11762440 ~ 11763023 (-)
G156971 NA non-coding upstream 386094 11781567 ~ 11782366 (-)
G156972 NA non-coding upstream 398130 11793603 ~ 11851710 (-)
G156978 NA non-coding upstream 659773 12055246 ~ 12061368 (-)
G156746 NA other downstream 285338 11100744 ~ 11105223 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 712411 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 1004594 10218473 ~ 10385967 (-)
LOC122328546 rpl10 other upstream 345927 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 349789 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 368236 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 404449 11799922 ~ 11801632 (-)
G156985 NA other upstream 527371 11922844 ~ 11924650 (-)

Expression


Co-expression Network