emp3b (emp3b,LOC107562456,LOC107671979,LOC107741326,LOC107737636,LOC107657024,LOC107560919)


Basic Information

Item Value
gene id emp3b
gene name emp3b,LOC107562456,LOC107671979,LOC107741326,LOC107737636,LOC107657024,LOC107560919
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11387916 ~ 11390286 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225287.1
CACACAAGGAGGATCTGATGGGACTGTGTGCAGGACAACAGCACTAACTCGGAGACGAGGAAATGGGCGTTTGCTGAAGCTGACCCCAAAAAAATCCTCCAATTTACTGGTGAGCCGAAAAGAGCGGAGAGCAGAAGCAGACCTGGACGAACACAGCAAGAGTCCATACACACTGTATTCGCTTCTGCTGGATTTGGATCACTTTTGGTGCCGCTGATCAGCATGGCGTCCCTTCTGGTGTTTGTCACCCTGCTTCATCTCATCATACTGGCCGTTCTCTTCATCGCCACCATGGAGAAGTCCTGGTGGGTTTGGGACGGCACGGAACACTCGGACCTCTGGTACAACTGCAGATTTGACAACGAAACGGAGGCGTGGTTCTGCGCGTCGTCCGAAGAGACGGAGTGGCTTCAGGCCGTGCAGGTCCTGATGATCCTGTCGGTGGTTTTCTCCGCCATTTCGTTCCTGATATTCCTGGGTCAACTCTTCACCATGTCTAAAGGAGGACTCTTTTACCTCACCGGCGTCTGCCAGGCGTTTGCCGGCCTCAACGCCTTCACGGCCGTGCTCATTTACACGCTGCACAGCGAAGAAATCCTGGCGGACTCGCGCGAGCTGAGCTCGGGACGCTTCGGGTACTGCTTCTACTTGGCGTGGGTTTGTGTGCCTCTGCTCCTGTGCAGCGGAGTCATGTACATCCATCTGAGGAAAAGGGAATAAAAACGAGTCTCCTAAAAACAGCCAAGCCACGTGAAGAATGTTTGCTGTTGATATACTCCGCTGAGCGATTATATACTTCTTGCGAGACTTATTTTTTTTGACTATTTAGACTGTATTTAGccgtatataaatatacaaaactgaAACGGAGGATCAGCGCGTTTTAGTTAACTCTTAAAGGGCAAGCACGACTAATCTATCTGATTAGCTCAATTAtatctaatttaataataaaagaggCCCAGCTTAATCTCGTTTCGTCCTGAAGGGTACTTGTAAACATGGTATCCATACGCTAAAGTTTTACtatgtatttttgcaaataaattcgATTAAGCGATTAA

Function

symbol description
emp3b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human EMP3 (epithelial membrane protein 3).

NR:

description
PREDICTED: epithelial membrane protein 3-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225287.1 True 1064 mRNA 0.48 5 11387916 11390286

Neighbor

gene id symbol gene type direction distance location
myh7bb myh7bb,myh7b,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469 coding upstream 9900 11361882 ~ 11378016 (+)
avpr2ab avpr2ab,LOC107672000,LOC107737642,LOC107657032,LOC107562472,LOC107741337 coding upstream 85983 11285331 ~ 11301933 (+)
LOC122328405 idh3g,LOC107671940,LOC108436344,LOC107560866,LOC108275983,LOC108276129,LOC108425561,LOC107593912,LOC107716150 coding upstream 119375 11263398 ~ 11268541 (+)
LOC122329091 LOC107560879,LOC107741317,LOC107657035,LOC107671941,LOC108436304 coding upstream 219458 11164642 ~ 11168458 (+)
LOC122329179 uba3,LOC107737645,LOC107672020,LOC108435248 coding upstream 226021 11155822 ~ 11161895 (+)
LOC122328759 cox4i2,LOC107737631,LOC107672030,LOC107560926,LOC107741330 coding downstream 51611 11441897 ~ 11444744 (+)
fkbpl LOC107672039,LOC107562454,LOC107657000,LOC107712683,LOC107560883 coding downstream 117682 11507968 ~ 11510961 (+)
trnan-guu_35 NA coding downstream 122339 11512625 ~ 11512698 (+)
trnan-guu_36 NA coding downstream 123487 11513773 ~ 11513846 (+)
trnaf-gaa_120 NA coding downstream 125513 11515799 ~ 11515871 (+)
G156633 NA non-coding upstream 54989 11331742 ~ 11332927 (+)
G156592 NA non-coding upstream 74313 11219035 ~ 11313603 (+)
G156599 NA non-coding upstream 76429 11245551 ~ 11311487 (+)
G156590 NA non-coding upstream 144880 11211041 ~ 11243036 (+)
G156568 NA non-coding upstream 235869 11148863 ~ 11152047 (+)
G156681 NA non-coding downstream 142349 11532635 ~ 11533198 (+)
G156682 NA non-coding downstream 144304 11534590 ~ 11534917 (+)
G156684 NA non-coding downstream 149329 11539615 ~ 11540315 (+)
G156685 NA non-coding downstream 150354 11540640 ~ 11555919 (+)
G156690 fam208ab,LOC107737622,LOC107712737,LOC107570279 non-coding downstream 223844 11614130 ~ 11651107 (+)
G156586 NA other upstream 210883 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 302312 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 463928 10913904 ~ 10923988 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other upstream 687021 10698798 ~ 10700895 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 815670 10563344 ~ 10572246 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other downstream 307128 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other downstream 340694 11730980 ~ 11732361 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 855907 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 2703792 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2909415 14299701 ~ 14343274 (+)

Expression


Co-expression Network