galnt6 (galnt6,LOC107695825,LOC107570209,LOC107668563,LOC107568460)


Basic Information

Item Value
gene id galnt6
gene name galnt6,LOC107695825,LOC107570209,LOC107668563,LOC107568460
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15611615 ~ 15620804 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225288.1
TCATTTGAACGAATGGCACCTGTTGCGTTCAAAGGGAAGCCGGGAGGCCAGTGCGGCTGGTCGCGTGAAACCGTCGCGAGCTTAGTGAACCCTATAGCTCTAAAACTCGAAGTTACAGAGTAACAACATCCGTCCATCGACTCGCAGCTCGAAAAAACGGCGTCTCGTTAGACGAGGAACGGCGTATCTCTCCATATAATCTGCCTCGGGGAGAAGCACATGATTGACTGAAATTATTACAGtttggtAAACGAGAGCAGCCAACAGAATGCGTCTGAGACGTCGTCTCTCCCCCCTGAAGCTTGCTGTTCTGGGCGGCACACTTTTTATGGTCATTCTGGTGGTCCTCCAGAGGGATGTTGGCAGCGGTTCGCTTCAGGACCCGTGGCTGCAAGATCTTTCTAACAAAAAAGAGAGGGTGTTCGAGATGGTCCGCGGTGCGGTCAATAACTTCGCCTTCCAGATCGGAGCCCCGCAGCCCCCGTCGGTGGGAGTGCTGCCCACCCCAGACCGAAACTGCCCCCCGGGTTTCTACACTCTTGCGGATCTCAAACCGTGGATTGAGAGACCTCCTCAGGACCCTCAAGCTCCGGGAGCCGATGCCGCAGCCTTCCAGAAAGCCAGCATGACTGCGGAGGAAGAGAAGGAGAAGCAGGATGGCATGACCAGGCACTGCTTTAACCAGTTCGCCAGTGACCGAATCTCCTTGCACCGCAGTCTTGGAGATGACACCCGTCCACCCGAGTGTGTTGAGCGACGGTTTCGACGATGTCCTAAGCTCCCCACCACGAGTGTGATCATTGTTTTTCATAACGAGGCTTGGTCAACACTTCTGCGCACCGTGTATAGTGTCCTGCACACCTCCCCAGCGGCCTTCCTCAAAGAAATCATACTGGTGGACGACGCCAGCACGGCAGAACACCTCCATGAGAAGCTGGATGAGTATGTGAAGTCACTGAAGATCGTGAAGGTAGTGCGTCAGCCGGAGAGGAAGGGCCTCATCACTGCGAGGCTTCTCGGAGCCGGGAAAGCTCAGGGAGAAATCCTCACCTTCCTGGATGCTCACTGTGAGTGTTTCCATGGCTGGCTCGAGCCTCTCCTCGCTCGCATTGTTGAGGAGCCCACTGCCGTGGTGAGCCCTGAGATCACAACCATTGATTTAAACTCTTTCCAGTTCCACAAGCCTATGGCGTCTACGCGTGCACATAACAGGGGCAACTTTGACTGGAGTCTCACATTTGGCTGGGAGGGCATTCCAGATTACGAGAATGCTAAACGCAAAGATGAGACTTACCCAGTGAAAACTCCAACATTTGCCGGTGGTTTGTTCTCTATATCGAAGGCCTATTTCGAGAAAATTGGGACCTACGATGACAAAATGGAGATATGGGGCGGAGAAAACGTCGAGATGTCTTTCAGGGTGTGGCAGTGCGGCGGACAGTTGGAGATAATCCCCTGCTCCGTGGTGGGTCATGTGTTCCGCACCAAGAGTCCTCACACCTTCCCCAAAGGTACAGAGGTCATTACGCGTAACCAGGTGCGCTTGGCTGAAGTGTGGATGGACGACTACAAGCTGATTTACTATCGACGCAGCCAAAGTGCAGCTAAAATGGCCAAAGAAAAAAACTATGGTGATATATCTGACCGATTGAAACTGAGAGAAACCTTACAATGCAAGAACTTTTCTTGGTACCTAACCAATGTCTACCCAGAAGCCTTTGTCCCTGATCTTACCCCTGTCAAGTTTGGAGCTcttAAGAATAGGGGATCACAGCAATGTCTGGATGTTGGCGAAAGCAACAATGGGGGAAAGCCTGtgattatgtatgtatgtcacAACATGGGCGGCAATCAGTACTTTGAATATACATCACATAAGGAGCTAAGGCATAACATAGGGAAACAGCTCTGCCTGCACGCGTCTCCTTACCCAGAGCCAGTGAAGATTGAGCTCTGTACACTGAAGGGCAAAGGCAGCAGTTTGTCTCCGGAACAAGAATGGGTGTTCACAGAAGAGGATCTGTTGAAGAATCCGTCCTCTGAAAAGTGCCTCCATAAGAAAGGAGACAAGATATTAATGAGCCCCTGCAATCCAGAAGACCATCACCAGCAGTGGACTTTCAGTTGACCTCGTACTCCAATCGAGGAGCAAGGACGTTCACTCCCATAAGACCCACGAGGGAGGGCCAGCAGCCACAGCTCAGGCTGACAAACTCACTGTAGGCCCGAGCGGATGCACTGGGAGTGCATTGGATAGTTCATATCCATAAGCTCCTGATGACATTATGATCAGACTGGGGTCCGGATGCTCAGGGAAGACGGAGATCATGGAGATCAACCCACTGGAGCATCACAGAGTGAGCAATCCAGCAGCACGATTGTTTACTTGATGCAACTTTTTGCCTTATTGATGATGTTTACCGCTGCTTTTAAATGGtgtaggttttatttatttttaaagaaatggaaaattaaatatttttggaacATTGTTAGTGTTAAGGCCAATGAACCGCCGGCCTTGCCAACGAATACTTGTGATGTCTGTATGATCCCAATCATTTGCACATGCTGCAGGggatgagggttttttttttcagctctaGTAAGCTGTCACAAGACGGCGGTTTCAGATCCTTCTTGTGTTTTTGAAGCCGTCAGTATGTATAAAGCAGCATGGGACTTTTGGGAAATCTGTtctaataatgtataaatgtaatttaattgtttcaTCCTCTTCACCTCTACATTATTCTTCTTTATGAAGTTTGACTACACAGATTTGTTCTTTAATGGTTGACATTTTCTAATATttgatgtataaaaaaatacacacttcCCAATCA

Function

symbol description
galnt6 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including EVL; hatching gland; periderm; polster; and sensory system. Orthologous to human GALNT6 (polypeptide N-acetylgalactosaminyltransferase 6).

NR:

description
polypeptide N-acetylgalactosaminyltransferase 6-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K24698 mftF; mycofactocin glycosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225288.1 True 2846 mRNA 0.49 11 15611615 15620804

Neighbor

gene id symbol gene type direction distance location
hspg2 hspg2,LOC107745451,LOC107695829 coding downstream 13589 15510955 ~ 15598026 (-)
si:dkey-205h13.2 LOC107716170 coding downstream 104969 15502428 ~ 15506646 (-)
tmem269 LOC107570193,LOC107726151,LOC107695831,LOC107668567,LOC107568457 coding downstream 121347 15479040 ~ 15490268 (-)
LOC122328900 rsbn1,LOC107668555,LOC107570136,LOC107737499,LOC107716162,LOC107564641,LOC107695834,LOC100330644 coding downstream 264417 15339059 ~ 15347198 (-)
LOC122328911 LOC107570149,LOC107668556 coding downstream 287593 15316727 ~ 15324022 (-)
adcy6b adcy6b,adcy6,LOC107695824,LOC107716189,LOC107745452,LOC107668560,LOC108433131 coding upstream 1677 15622481 ~ 15659407 (-)
dtx3 zgc:66440,LOC107745454,LOC107570277,LOC107695821,LOC107571783,LOC107716192,LOC107668558 coding upstream 98454 15719258 ~ 15724002 (-)
stat6 LOC107570234,LOC107745457,LOC107571782 coding upstream 116797 15737601 ~ 15756066 (-)
fignl2 si:dkey-157g16.6,LOC107745458,LOC107570337,LOC107687555,LOC107571780,LOC107716072,LOC107695734 coding upstream 139081 15759885 ~ 15808524 (-)
scn8aa scn8aa,LOC107570345,LOC107745459,LOC107695818,LOC107716197,LOC107563626 coding upstream 193905 15814709 ~ 15860823 (-)
G158174 LOC107571455 non-coding downstream 4535 15603848 ~ 15607080 (-)
G158024 si:ch73-206d17.1,LOC107571682,LOC107726152,LOC107695830 non-coding downstream 133846 15476487 ~ 15477769 (-)
G157984 NA non-coding downstream 272772 15210228 ~ 15338843 (-)
G158019 NA non-coding downstream 314979 15295888 ~ 15296636 (-)
G158014 NA non-coding downstream 407665 15202366 ~ 15203950 (-)
G158188 NA non-coding upstream 60082 15680886 ~ 15681872 (-)
G158198 NA non-coding upstream 107350 15728154 ~ 15789331 (-)
G158208 NA non-coding upstream 191477 15812281 ~ 15812927 (-)
G158227 NA non-coding upstream 343949 15964753 ~ 15965763 (-)
G158282 NA non-coding upstream 480821 16101625 ~ 16102214 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other downstream 137225 15347417 ~ 15474390 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other downstream 309933 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other downstream 563271 15047152 ~ 15048344 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other downstream 1021993 14570347 ~ 14589622 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other downstream 1280831 14326966 ~ 14330784 (-)
LOC122329227 NA other upstream 1138 15621942 ~ 15717250 (-)
G158231 NA other upstream 387302 16008106 ~ 16008915 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other upstream 523029 16143833 ~ 16169834 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other upstream 620006 16240810 ~ 16243395 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other upstream 734565 16355369 ~ 16358705 (-)

Expression


Co-expression Network