LOC122329091 (LOC107560879,LOC107741317,LOC107657035,LOC107671941,LOC108436304)


Basic Information

Item Value
gene id LOC122329091
gene name LOC107560879,LOC107741317,LOC107657035,LOC107671941,LOC108436304
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11164642 ~ 11168458 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225296.1
GCAAGCATGTCTTGCGAAAGAGAAACGTGTGTGGAGCTTGTCTGCAGGAATAAAGTAAAGCGGAAAGCAGGGGCTcttctgcttgtgtgtgtgtggctcctGTGCTCTCAGTCAGTGTCCAGCAGCAACCAAAGCTCTCGAGGCCAAACCGGTCGGTCTGAAGTTAAGCCGGGAACCTGTGAGGTGGTGGCAGCTCATCGATGCtgtaataagaataaaatagaGGAGAGGTCTCAGACGGTCAAGTGCTCCTGTCTCCCAGGACAGGTCGCTGGGACCACCCATGCCCAACCTTCATGTGTAGATGCATCTATCGTCCGGATGAAGTGGTGGTGTCAAATGGAGCCGTGTCTAAATGGTGAAGAGTGTAAAGTGTTGCCTGACCTCACCGGCTGGTCCTGCAGCTCTGGGAACAAAATCAAAACTACCAAGGTCACACGGTAAAGCAACACTTCTGTGGACATGTGATGACAACTCATAATTTCACAcgagcatattttaaaatcagaccTGCAAATGTCAACAAAAATGCACACTCGAGCAGAAACATGCGACCTGTGAACTAAGACTGTGAAAAGAGTTAAAACGAAAGGCATTGGcttcataaaatatttctagttcaaataaatgctgttttgtaaccttatttgttcagaattgtaaaaaatcttctacctaaaatattaaacagcaactgtttttaacattgaaaataataataataaatgtttgagtAGCAAGTCAGCGTAATATAGTGATCATgtgactagagtaatgatgctaaaaaaactcacaggaataaattgcacttTTATTCATATCCAGATAGAAAACggttattataaattgtaataatatttcacaattacacagttgta

Function

NR:

description
PREDICTED: protein FAM19A4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225296.1 True 878 mRNA 0.41 4 11164642 11168458

Neighbor

gene id symbol gene type direction distance location
LOC122329179 uba3,LOC107737645,LOC107672020,LOC108435248 coding upstream 2747 11155822 ~ 11161895 (+)
mfsd4ab mfsd4b,LOC107737687,LOC107671943,LOC107560864,LOC107741314,LOC107563649,LOC107656990 coding upstream 17055 11141479 ~ 11147587 (+)
LOC122329135 LOC107737653,LOC107671959 coding upstream 59467 11100072 ~ 11105175 (+)
nfascb nfascb,LOC107672057,LOC107737654,LOC107741310,LOC107657041,LOC107560902 coding upstream 66100 11085866 ~ 11098542 (+)
LOC122329335 NA coding upstream 88905 11075662 ~ 11075737 (+)
LOC122328405 idh3g,LOC107671940,LOC108436344,LOC107560866,LOC108275983,LOC108276129,LOC108425561,LOC107593912,LOC107716150 coding downstream 94940 11263398 ~ 11268541 (+)
avpr2ab avpr2ab,LOC107672000,LOC107737642,LOC107657032,LOC107562472,LOC107741337 coding downstream 116873 11285331 ~ 11301933 (+)
myh7bb myh7bb,myh7b,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469 coding downstream 193424 11361882 ~ 11378016 (+)
emp3b emp3b,LOC107562456,LOC107671979,LOC107741326,LOC107737636,LOC107657024,LOC107560919 coding downstream 219458 11387916 ~ 11390286 (+)
LOC122328759 cox4i2,LOC107737631,LOC107672030,LOC107560926,LOC107741330 coding downstream 273439 11441897 ~ 11444744 (+)
G156568 NA non-coding upstream 12595 11148863 ~ 11152047 (+)
G156572 NA non-coding upstream 38008 11124092 ~ 11126634 (+)
G156551 NA non-coding upstream 129147 11033791 ~ 11035495 (+)
G156496 NA non-coding upstream 262819 10829167 ~ 10901823 (+)
G156432 NA non-coding upstream 436412 10727933 ~ 10728230 (+)
G156590 NA non-coding downstream 42583 11211041 ~ 11243036 (+)
G156592 NA non-coding downstream 50577 11219035 ~ 11313603 (+)
G156599 NA non-coding downstream 77093 11245551 ~ 11311487 (+)
G156633 NA non-coding downstream 163284 11331742 ~ 11332927 (+)
G156681 NA non-coding downstream 364177 11532635 ~ 11533198 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 79038 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 240654 10913904 ~ 10923988 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other upstream 463747 10698798 ~ 10700895 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 592396 10563344 ~ 10572246 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 609922 10551097 ~ 10554720 (+)
G156586 NA other downstream 5963 11174421 ~ 11177033 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other downstream 528956 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other downstream 562522 11730980 ~ 11732361 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 1077735 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 2925620 14094078 ~ 14126201 (+)

Expression


Co-expression Network