prpf6 (prpf6,LOC107705744,LOC107697009,LOC107673318)


Basic Information

Item Value
gene id prpf6
gene name prpf6,LOC107705744,LOC107697009,LOC107673318
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4551029 ~ 4566274 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225297.1
GTGCCGGAAGTGAAGCGTGTTGTCGGCGGCGTAACGATGGCGAGCGCTACAGCGAAACAGCCCGCGAAAACTGCGAGCAAAGCGGCGTCCGGAGGGAGCGGCGGGGCCGCGGGCGGAGCACCGGCGATGCCGCTCGCCTCTCCGCTCATGGGCGGCTTgaataagaagaagaagccGTTTCTGGGCATGCCTGCGCCGCTGGGTTACGTGCCCGGTCTGGGCAGAGGTGCCACAGGTTTCACCACGCGATCAGATATCGGTCCCGCTCGGGATGCCAATGACCCTGTGGATGATCGGCACGCGCCCCCCGGGAAGAGGACGGTGGGCGATCAGATGAAGAAGAACCAAGACGACGACGACGAGGATCTGAATGACACCAACTACGATGAGTTCAACGGCTACGCGGGCAGTTTGTTCTCCAGTGGGCCGTATGAGAAAGACGACGAGGAGGCGGACGCCATCTATGCCGCTCTGGATAAACGTATGGATGAGAGACGCAAAGAAAGGAGGGAGCtgcgagagaaagaggagaTCGAGAAATACCGTATGGAGCGGCCCAAAATTCAGCAACAGTTCTCAGACCTGAAGAGGAAGCTGGCTGAGGTCACAGAAGATGAATGGTTGAGTATTCCTGAGGTTGGTGATGCCAGGAACAAACGTCAGAGGAATCCCCGTCATGAGAAGCTCACACCCGTGCCAGACAGCTTCTTTGCCAAGCATCTCCAGACGGGGGACAACCACACTTCTGTTGACCCGCTGCAGGGGCAATTCGGCGGCCTAAATACACCCTTCCCCGGAGGCTTGAACACACCCTACCCAGGAGGCATGACCCCTGAAGCTGGAGAGCTGGACATGAGGAAGATCGGACAGGCCAGAAACACACTGATGGACATGAGGCTCAGTCAGGTGTCTGACTCTGTGAGCGGACAGACAGTTGTTGATCCTAAAGGCTATCTCACCGATCTCAACTCCATGATCCCCACACATGGAGGAGACATCAGTGATATTAAGAAGGCCCGTCTCCTCTTGAAGTCGGTGAGAGAAACAAACCCTCATCACCCGCCCGCCTGGATTGCTTCAGCCCGTCTGGAGGAAGTGACCGGCAAGCTGCAGGTGGCCAGGAACCTGATCATGAAAGGCACCGAGATGTGTCCCAAGAGTGAGGATGTTTGGCTGGAAGCTGCCCGGCTGCAGCCTGGAGACACGGCGAAGGCAGTAGTTGCCCAGGCGGTGCGTCACCTCCCTCAGTCTGTGCGCATCTATATCAGAGCCGCGGAGCTGGAGACGGACATCAGGGCCAAGAAACGAGTGCTCCGGAAAGCTTTGGAGAATGTGTCGAAGTCTGTGCGTTTGTGGAAGATAGCTGTTGAGCTGGAGGAGCCAGAGGACGCAAGGATCATGTTGAGCAGAGCAGTCGAGTGCTGTCCTACCAGTGTtgagCTCTGGCTGGCTCTGGCCCGATTAGAAACCTATGAAAATGCCCGTCGTGTTCTGAACAAGGCCCGTGAAAACATTCCCACTGACCGGCATATCTGGATCACAGCTGCCAAGCTGGAGGAGGCCAACGGCAATACACAGATGGTGGAGAAGATCATCGACAGAGCCATCACCTCCCTGAGGGCCAACGGCGTGGAAATCAACCGCGAACAATGGATTCAGgatgcAGAGGAGTGTGATAAAGCTGGCAGCGTGGCCACGTGTCAGGCTGTGATCAGAGCTGTGATCGGGATTGGCATTGAAGAGGAGGACTGCAAACACACATGGATGGAGGATGCAGACAGTTGTGTGGCTCACGGCGCTCTGGAGTGTGCTCGGGCCATCTACGCTCATGCTCTCCAGGTCTTCCCCAGCAAGAAGAGCGTCTGGCTGAGGGCCGCTTATTTTGAGAAGAACCACGGCACGAGagagTCGTTGGAGGCTCTGTTACAGAGGGCCGTGGCTCATTGTCCCAAGGCTGAGGTGTTGTGGCTTATGGGTGCTAAATCGAAATGGTTAGCAGGCGACGTTCCTGCAGCTAGAAGTATCCTGGCCTTGGCTTTCCAGGCTAACCCCAACAGCGAGGAGATCTGGCTGGCTGCCGTGAAGCTGGAATCGGAGAATAACGAGTACGAGAGAGCTCGCAGGCTTCTGGCCAAGGCCCGTAGCAGCGCCCCCACAGCCAGGGTGTTTATgaagtctgtgaggctggagtGGGTGCTGGGGAATATTGACGCAGCGCAGGAGCTGTGTACGGAGGCCCTGAGGCACTATGAGGATTTCCCCAAGCTTTGGATGATGAGAGGACAGATCGAGGAGCAGTCGGAGAACATCGACAAAGCACGGGAGGCCTACAACCAGGGACTGAAGAAGTGCCCTCATTCCATGTCGCTATGGCTGCTTCTGTCTCGGCTGGAAGAGAGAGTCGGGCAGCTCACGCGCGCTCGGGCCATCTTGGAGAAAGCTCGCCTCAAGAATCCACAAACTCCTGAGCTTTGGCTGGAGTCTGTTCGACTTGAATACAGAGCGGGGTTGAAAAACATCTCCAACACGCTCATGGCCAAAGCCCTTCAGGAGTGCCCCAACTCTGGCATCCTGTGGGCTGAAGCCGTGTTCCTGGAGGCCAGGCCTCAGCGCAAGACCAAGAGTGTAGACGCTCTGAAGAAGTGCGAACATGATCCCCATGTGCTTCTGGCAGTTGCCAAATTGTTTTGGAGCGAGAGGAAGATAACCAAGGCACGGGAGTGGTTTCTGCGCACAGTAAAGATTGAACCAGACTTGGGAGATGCCTGGGCCTTCTTCTACAAGTTTGAGCTTCAACACGGCACAGAAgagcagcagcaggaggTGAAGAAGCGCTGTGAGAACGCGGAGCCGCGGCACGGCGAGCTGTGGTGCGCCGAATCCAAACACGTTCTCTACTGGCAGAAGAACATCGGAGACATCCTGGTGCTCGTCGCTTCAAAGATCAAAAACACCTTCTGAACTGTGGGACTAATGGCAGGATCGCACATCCCAGCATGTTTGCTTTGgcaaatatgttgtttttagagAAACTGTGGACAGGATTATTGGtcgtattgttttttttctacagacatttttttccccctacttTGTGTGTTTGCCCCTCTGGACCTGTGATGGTTCAGGGCTGTTTTAGTTACACATGCTGTTATGTTCAGCTGTAAAGTCTAGTCACACCCAGAGATGAGTCCATTTTGATCGTTAATATCAGACGCCCTCTTAATCGGCTTCTCATTGTGCTAATGTGTAAATGTGCTGCTTATCGGGCAATAAACAAAGTCTGGTCCGTTTCA

Function

symbol description
prpf6 Predicted to be involved in spliceosomal tri-snRNP complex assembly. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex and catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in retinitis pigmentosa 60. Orthologous to human PRPF6 (pre-mRNA processing factor 6).

NR:

description
PREDICTED: pre-mRNA-processing factor 6

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12855 PRPF6, PRP6; pre-mRNA-processing factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225297.1 True 3296 mRNA 0.55 21 4551029 4566274

Neighbor

gene id symbol gene type direction distance location
edem2 edem2,LOC107697010 coding downstream 4623 4540302 ~ 4546406 (-)
si:ch211-117c9.2 LOC107750896,LOC107696933 coding downstream 20693 4521926 ~ 4530336 (-)
trim35-39 NA coding downstream 29249 4517836 ~ 4521780 (-)
LOC122328988 LOC107697013,LOC107750890,LOC107601349,LOC101884738,LOC107705748 coding downstream 208390 4340087 ~ 4342639 (-)
ptges3b ptges3b,LOC107750889,LOC107601352,LOC107673275,LOC107697015,LOC107705749 coding downstream 214004 4330715 ~ 4337025 (-)
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding upstream 245514 4811788 ~ 4815325 (-)
g6pd g6pd,LOC107723128,LOC107705737,LOC107693547,LOC107697003 coding upstream 249548 4815822 ~ 4827179 (-)
adcy6a adcy6a,adcy6,LOC107705664 coding upstream 269707 4835981 ~ 4877028 (-)
ddx23 ddx23,LOC107705733 coding upstream 348216 4914490 ~ 4920882 (-)
nkain4 nkain4,LOC107693550,LOC107696930,LOC107601334,LOC107705734,LOC107594068 coding upstream 361755 4928029 ~ 4977122 (-)
G154933 NA non-coding downstream 811 4546883 ~ 4550218 (-)
G154895 rbm38,LOC107565990,LOC107705751,LOC107673236,LOC107697017 non-coding downstream 207162 4283769 ~ 4343867 (-)
LOC122328378 NA non-coding downstream 348889 4200644 ~ 4202140 (-)
G154787 NA non-coding downstream 485500 4063965 ~ 4065529 (-)
G154789 NA non-coding downstream 486149 4063523 ~ 4064880 (-)
G155085 NA non-coding upstream 113709 4679983 ~ 4680279 (-)
G155092 NA non-coding upstream 141391 4707665 ~ 4710337 (-)
G155093 NA non-coding upstream 146415 4712689 ~ 4713082 (-)
G155096 NA non-coding upstream 161580 4727854 ~ 4731140 (-)
G155112 cacnb3a,LOC107705735,LOC107696997,LOC107724200,LOC107601341 non-coding upstream 342644 4908918 ~ 4943017 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other downstream 356031 4173914 ~ 4194998 (-)
lad1 LOC107746516,LOC107696941,LOC107559160 other downstream 645137 3894966 ~ 3905892 (-)
tspan2b tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202 other downstream 1032887 3502265 ~ 3518142 (-)
LOC122328836 LOC107566068 other downstream 1105065 3434124 ~ 3445964 (-)
G154445 NA other downstream 1599401 2925305 ~ 2951628 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other upstream 261204 4827478 ~ 4834520 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other upstream 888143 5454417 ~ 5455047 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other upstream 911567 5477841 ~ 5479822 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other upstream 917938 5484212 ~ 5496474 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other upstream 2164577 6730851 ~ 6731886 (-)

Expression


Co-expression Network