syt6a (syt6a,syt6,LOC107673111,LOC107591076,LOC107593918,LOC108433426,LOC107737664)


Basic Information

Item Value
gene id syt6a
gene name syt6a,syt6,LOC107673111,LOC107591076,LOC107593918,LOC108433426,LOC107737664
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14150523 ~ 14196687 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225302.1
GCAGCGGGAGAAACTTGCGTTCATGCGGCTGCTTCAGCGGCACTGTGGGTGAGAGGGGGTGTGTTTGAATCCCGCTGGAGGAGGCAGTAACGCCGAGGATGCGTCAGGGAGCATGACTGCTGCCGGAAAGGGGCATGACATGATCTGTCAGAAGGCAGTGTCTCTCATAGTTGACCTCTGTACGCAGGACAGCCCGCGGCTGGACCACAACACCTGTGAGGAGTTCCTCTTTCTCATCTCCAATCAAGAGTACAACCACAAGGACTCAGACATCGCTGTTGGCCTCCCCATCGGTGTGATAATAGCGTGTGGCTTGGCGCTGCTGTTGCTCGCTGCATTCGTCTCCTGGAGGCTGTGCTGGGTCCCTTGGAGGAACAAAGCCCTCTCGTCGAGTTCTGCGGCCCTCGCGCCTGACGACTGCCCATCGTTTCATCTACCGTCTCTTCTGCCCAGTCCTCAGCCGTCTGAGGTCACTATGGCGACTGAGAAGGAAAAGTATCCTTTGGCGTCGATGGGCTTCCTGGAGGCAGCTGTTAAAATAAGTCACACCTCTCCCGACATCCCTGCCGAGGTGCAGCTCTCCATGAGGGAGCACTTCCTGCGCCGTACGCAGCGCATGCAAAGACAGACCACCGAGCCAGCGTCATCCACCAGGCATAGTTCCTTCAAACGCCACCTTCCCCGTCAAATGCAGGTAGGGAGTCTGGACCTGGGAGATGACTATGATGTGGATGAGCAACCAACCAGCATTGGCCGTATCAAGCCTGAACTCTACAAGCAAATGACCACAGAGAACGACGAATCCGGCAACAGCAAAGGCGGCAAAAACTGCGGCAAGATCAACTTTTCCCTCCGCTATGACTATGAGAACGAGATGTTGCTTGTCAAGATACTCAAGGCATTTGATCTCCCAGCCAAAGACCTTTGCGGCAGCTCCGACCCGTATGTCAAGATCTACCTGCTGCCGGATCGGAAGCAGAAGTTCCAGACACGAGTTCACCGTAAAACGCTCAACCCCACGTTTGACGAGTCCTTCCAGTTTCCGGTACCCTACGATGAGCTTCCCGTCAGGAAACTCCATCTCAGTGTTTTCGACTTTGACAGGTTCTCACGGCACGATATGATCGGGGAGGTCATACTGGACAATCTGTTTGAAGTGTCTGATCTCTCAAGGGAGACCTCCATCTGGAAAGACATTCAGTATGCTACCTCTGAGAGCGTGGACCTTGGGGAGATCATGTTCTCACTCTGCTACCTACCTACGGCGGGCAGATTAACACTCACTGTCATCAAATGCAGGAACCTAAAGGCAATGGACATTACAGGATATTCAGATCCCTATGTGAAAGTATCCCTCATTTGTGATGGAAGACGCCTGAAAAAGAAGAAGAccacaacaaagaaaaacaccCTGAATCCCACTTATAATGAGGCCATTATCTTTGACATCCCTCCAGAAAGCATGGACCAAGTCAGCTTGCACATCTCAGTCATGGACTATGACCTggtgGGGCACAATGAGATAATTGGTGTGTGCCGTTTGGGCAGTAGTGCTGAAGGTTTAGGTAGAGACCACTGGAACGAGATGCTCGCATACCCCCGAAAACCAATTGCACACTGGCACCCCCTGCTGGAAccaaaaaagtctgaaaaagaGTGGAAAGCTAGAACGGCAAGTTTTGACAGCCAGGGGTCTTGTCCCTCCCCCAAACCTCCCGCCAGCCCTTGATCAGAGCCATATGTAAAACTACAGGCTCGGGATCCTCCGTTTGCCACTCGGATGAAAACGAGAGCCCTGCTATTTCCAATTTCACCTATGGGTTGTTTTAGATGGTTCCCAAACACTGATCTAAGATCCTGCTGTCTTTGCTGTCTGATGTTCCTCATGTTCAAGCTGTTCCAGTCCGTACGATCCTCAGTCAATTCTTGGGAGTGTTGTACAAACCTAGAATACTATTCAAAAGCCAACGTCGTGTTCCTAGAATAGCTCGGTATCGTCAGCGGAGATGTTTCGTTCCAATATGAATTTTCCTGAAGCAGTTGAAATCCGACGCGGTGTTCTGCAAGCGGTCTATGCGCAAACAGAAGTTTCCGCACAACACCGCAAGGCTCTTTGTAGATGGCTATGCTCAGATCTAAAGACTTTGAAAGTACGATCAACTTTTGGAAGTACTGAGAATGAGGTCAGAAAGAACGGCGTGGAAAATACTGTTTTGCGtgagtgagaaaaaaaagaagcgaaTGGATTTGTCACGTGCTGTATACTAACAACAAAGCATTTTCTCTGTCAAATCCTCGTATGAAAAATGTGTGAAGGTACACGTTTTATGaagaatatttcaatatttagcAGTTTATAGATGTTGTGTAAATGTTGTGTGTAAAAAGAGACAAAATTTATCAGAGCACAACAAATTTTTCCATTATTTCTTGCCAAAACAAAGATGTTTACGTGTAAAGAAGTTCCtgttcacacacaaaaactctTCACATGTAGCTGAATAAACGTATGTgattacattaatattcattggCAAGACCTCGAGTACAAAAGTGgtcatttaaaggaatagttcacttatttactcaccctcaagtagatCTACGTctgtatgaatgtttttgtttctttgttttgatgaaaacagaaaaaaatattttaagaaagaaagtTTTTAACCAGGTTGTTTCGGGTCACCATTCatttccatagtaggaaaaaaatatatactatggatgtcaatggtgacccaaaacagcccggttgagtaaatgattacagaatttttatttgtcggtgaactattcctttaaagtaaaAGTGCTGAAATATACATAAAGGTCTGATTTGATTTATGTGGCTTTTATTCAATTTGTTGTAATAGCATTTAAAGAGCTACAGAAGCTGTTCTGTATCTTAGTAGCACTGCTTTTAATATCAACTCAATTCCTCTTTGAATCCTCCTGCTGTTTCAATCTAATGTTGACAACTCGTTCATCTTTTGACATGTAATTTCATTGTGAGTTAAATTGGACTGTcaaagttttcagttttttttgacatattgtCTGGGAAAATGTCTTGAGTAAACAATATACGCTGaaatttatcaaatatattcatattctgtaCTGTATAAAGGAGCAGggttaacattataaaatgtaaaataggcAATTAACTAACGTTCATCTTtagataaatattttcatgtgaATTAAATTGCGAATCAATTATTGGTATAATCAAACAAtccaataaattaaattaagtaaataactattgtaaatgtaaaacgaCAAAATTAATGCCATGCTGCCCAAGAATTCTTCTTAGAATCTATAAAACTCAACAAAGCTAAACTGAGcgatcaaaataataattattgttactttttacatttttaacgtcataaatgattaaacaaaagTCAATACTTTTTATTGCCCtcaatatttgatttgtttatccCTGTGGTTtcaatctttttgttttacatgaTTCGTTCATGACACGGTTttacttgaaattttaagttaacAGAGATGCTCAGGC

Function

symbol description
syt6a Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to act upstream of or within acrosome reaction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYT6 (synaptotagmin 6).
syt6 Enables clathrin binding activity and syntaxin binding activity. Involved in acrosomal vesicle exocytosis. Predicted to be located in cytosol and perinuclear endoplasmic reticulum. Predicted to be extrinsic component of membrane and integral component of membrane. Predicted to be active in exocytic vesicle; glutamatergic synapse; and plasma membrane. Predicted to be integral component of synaptic membrane.

NR:

description
PREDICTED: synaptotagmin-6

GO: NA

KEGG:

id description
K19906 SYT6; synaptotagmin-6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225302.1 True 3556 mRNA 0.43 7 14150523 14196687

Neighbor

gene id symbol gene type direction distance location
sdf4 sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443,LOC107593920 coding downstream 46297 14100397 ~ 14104226 (-)
ctdsp2 ctdsp2,LOC107593922,LOC107716136,LOC107673073,LOC107687442 coding downstream 56087 14085586 ~ 14094436 (-)
tmem240a tmem240a,tmem240,LOC108275582,LOC107593924,LOC107687438,LOC107673083,LOC105898995 coding downstream 110445 14031726 ~ 14040078 (-)
LOC122328469 sdhb,LOC107673094,LOC107593926,LOC107591143,LOC103467007 coding downstream 121355 14025634 ~ 14029168 (-)
atp13a2 LOC107737536,LOC107673093,LOC107716130,LOC107687434 coding downstream 124997 14013247 ~ 14025526 (-)
avpr2aa avpr2aa,LOC107591070,LOC107737524,LOC107687451,LOC107716149,LOC107673055,LOC108436342 coding upstream 61163 14257850 ~ 14272460 (-)
idh3g idh3g,LOC107737522,LOC107591068,LOC107673097,LOC107716150,LOC107593912,LOC108425561 coding upstream 90274 14286961 ~ 14293566 (-)
lrp1ab lrp1,lrp1ab,LOC107673053,LOC107593902,LOC108425568 coding upstream 232285 14428972 ~ 14524636 (-)
senp1 LOC107673065,LOC107568405,LOC107737512,LOC107716163 coding upstream 358127 14554814 ~ 14563800 (-)
LOC122328465 LOC107737694,LOC107673066,LOC107568406,LOC107668342,LOC107564659,LOC107716177 coding upstream 367777 14564464 ~ 14569658 (-)
G157875 LOC107673069,LOC107737697,LOC107593917,LOC107591119,LOC107716140,LOC107687444 non-coding downstream 6593 14143662 ~ 14143930 (-)
G157874 NA non-coding downstream 8355 14141939 ~ 14142168 (-)
G157863 NA non-coding downstream 74586 14057837 ~ 14075937 (-)
G157826 NA non-coding downstream 324934 13823993 ~ 13825589 (-)
G157813 NA non-coding downstream 377215 13772775 ~ 13773308 (-)
G157880 NA non-coding upstream 39665 14236352 ~ 14237014 (-)
G157885 NA non-coding upstream 45894 14242581 ~ 14243955 (-)
G157901 NA non-coding upstream 106185 14302872 ~ 14343270 (-)
G157905 LOC107668334,LOC107716153,LOC107737519 non-coding upstream 128029 14324716 ~ 14325647 (-)
G157906 NA non-coding upstream 129697 14326384 ~ 14461017 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other downstream 868196 13280256 ~ 13282327 (-)
G157367 NA other downstream 933115 13141078 ~ 13217408 (-)
G156985 NA other downstream 2225873 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 2292555 11763709 ~ 11857968 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 26122 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 130279 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 373660 14570347 ~ 14589622 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other upstream 488203 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other upstream 850465 15047152 ~ 15048344 (-)

Expression


Co-expression Network