lrrc38a (LOC107703049,LOC107737569,LOC107591108,LOC107712669,LOC107687405)


Basic Information

Item Value
gene id lrrc38a
gene name LOC107703049,LOC107737569,LOC107591108,LOC107712669,LOC107687405
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12665001 ~ 12673819 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225313.1
AgtacaatgaaatataaatttgttaATCCTATAATCTGTACTAAATATGTGGCCATGTAATTCTACATACACCATGGTGCACTTGTATCCACATAAATCGAATTTGTCAGTACTGTTGTGATTGAAAGTGCTTTAATGACTTGGCCCAGTTTCGTTGATCCCTCATAGTCAGGACTTCGATGCTGTGCATTCAAGTGGGTGTCCTAGTTTCCGAGACATTCATATTTTGTGACTATCTgtgcttttttacattatttattttgtggccAGTTGTCTCAACATTGCTCAGGTTTAGTAGGGTGACAGTATCTTGCTCTTGGGTATGTTGGTGAGGATCATCCAGAGTGAGGGCCCAGAATGCACCTGGAAGGAAAGTGTGTCACCATGTCCTCAGCCGAGGCTGACAGGTGTTCTTTTTGGGGGCGCTGGCACATGGTATTCTTgcagtgtgtgaatgtgtatatGGGATTATCTCATGTTTCTCTTTAAAGACCCTGGTGAGAAAATCCGAGCTGGATGATCTTCTCCACTAAGCCCTGTCATGCACCCTCCTTGACGATGAATACTTTGGTTCTGTAAAAGAATCAACTCAACCCTGCCAAAGAAAGGCACACAAAGTTAGCGGCATTTTTATCTCAAACTCAGgtcatttgtatgtattttgcaAGGTggttaatttgtacaaattcgcATGATCTCACTCATGcgtacccctaaacctacctgtcaGTGGTACGTCAAATCGTACAAGTGACGATGTACAAATaagccaaaatataaaatgcatttgaattggttgaaaaataatgttaccTTTCTGTTGTCATGCAAGCATGCCACATTGTTAAATCACAGTAAGTAGCATTGCCTTTTGTTTGTGTCCATTCCTGTTGTGTCCCATCCACAACCCAACTGTGTCAAACAGTATGTTGCTCAtgatatttatcatttattcatgtgcCAGACTTTAATTGTGAATGGAAAATCTGCACGACTTTTCTGACACTGCCAAATGCCCTACTGAGTAGATATCCTGTACCTACCCTCCTTTGCACTAATGAACCTgacatttgtttcttttacaGGGACACCGGGGGAACTAACATTTCAAGTTGATATTTTTCAAAGATGTGCCACATGAAAAAGGTCAAAGGCaagtctctcttttttccctGGTGATGCCTGCCAGAAAGGTCAAGGTTACAATATGACCTATGGGAGTATTGTGTAATTCCATTGGGCTGTGCCATGCTATTCTCCAGTGCGTGTGATGTAAGAGGAAAGCTGTCTGTGGTCACAGCATGTGTTCTATTTGCCTGGAGATTTACAGCAGCACAGGAGTAAACATGAATTCAGAATACAGACcgacaaaaataaacaacaacagctgGAAAAGCGATGAGTAATGACCGCTTTCAAGAGCGCACTGGAGAAGAGGGCAGTAATCTGTATGCACACAGCCCCATGTTAATCGTCACATCCATCACCATGGCAATGGAGCCAGAATATAAAATTATGCACTATGCCGACTGAATCGGAGGACAAGAGAAAAGAAGCTAAATGTGTTGCCAACAAGTCATTAGTCGTTTATCCAGAATGGAATTAGACTTGCAACCACAGCCTTGGGTCAAATGTGCTATGGGCACCACGGTTCAGCTGGCACGCAATCAAGAGCAGAAGCGTATGGACCAAGATACAGATCAGCAGATAGAGTACATTTGAATTAAAGAATCAGAATTCCCTTTCGACCGTGGGTAAACCGAGTGGGCTACACCTCCTCTTCAGTCGTCACACTCCCCTCCCCTCTCCATGCCCCCAGCGCTTCCCAGTCTCTGGTTCACTCGTCTCTGTTTACCTCTCTGCTAATCCCTTGCATTgcgcgctctctctcttccccaCATTCTCTCGATCGCTGTCTCTCCTCCCCTTTCATGCTCAGAGCCAGCGGGCTGCCACACGACCCACACTGCCTGCTACATGATCTCGTGGAAAACAGAGCTCCGTGTCTTTGTAGCCGCTTGCTGTTGCTCGAGCCTTTGTAGATTGCAATCTAGGAGACAAGGAAAGATGCCTTCGCGACAACCCTGACTCCTGTTATCTCCAGATGCTCTCCTGTCCCCTTTCCTAGTATCTCACCCCCTGACCCTTTACCCCATCCCCTCTCCTCTACCCCTCTCCAAACCTCCCTCTCTTAATCCCCCCAATCTCCCCTTCACCTCGCACCCTCTTGACAATGTTCTCATGTGTTCGCTGGTTTCAGCCTTTCCTTGCCTTGCTCTCCTCTACCTTGTTAACTTGGGGGTACAACTGCCCATCCAGCTGCTTGTGTCCAGACCATCACACCGTGGACTGCACAGGTCAAGGACTCACCCGTCTTCCAGACTCCATCCCTTTGGACGTACGGAGGCTCCTTCTGTCTAACAACTGGATTCCCTGGATCCCTTCTGATTTCCTGGTTCTCTACAGTGATTTAGTGTACCTGGATCTGAGGAATAACTCCCTGACAAGGCTGGAGCCTGGGACTCTGAGCACATCCTCCAGACTGGTCTACCTGGACCTGGGAAGCAACAACTTGACTGAGATCCCCTCAGGAACTTTCGGGGAATCCCGTAGTCTGATCAAGCTACGGCTGGGGAACAATCCATATTTGAATATGGTCAGCGAGGACGCCTTTGCGGGCCTCACTTCCTTACGAGAGCTTGAGCTGGAGAGGAATCCTCTCTCCGGCCTGGACGTTGGGGTGTTGAGCCAGTTGCCTTCTTTGCGGGTGATACGCCTGGAAGGGAACCCCTGGTTGTGCAATTGCAACTTTGCCAAACTCTTTCTGTGGCTATTGGAAAATCGTCACAAGCTCCCAACTGGGTTAGATGGTATGGAGTGCTCTCTTCCTGGGGACGGGCGGCAGGTGTCCCTCAGTGTGCTTTCTGAGGACAGTTTCCGGGAGTGTCAAGGATTGCTGACTCTCACTGATTATCTCATAGTAATTTTTTCTGGAATTTGTATTTCAGTGGCAGCCATTATTGCCAGTTTCTTTCTGGCCTCCACTATCCACTGTTTCCAGCGGCTCAAATCCAAAAGGACAGATGAAGAGGAGGCAGAGGACTAAGGGGACAGAATCATTGGACAGAATGGAGATTACGAATTACCCATAATGCACCACACAGTGGAAGCCAAGGGATTGGATAAAGAGGTGAAAAACCTTATTTCCATGACAAAAGAACCCTGAATTAGGCCCCTGTGTGACCAGGCTGAGGCTGCTAGAGCCGTCTCAAATCTCACAACCTTCATCCGTGATGCTTGAATGGAGCGTCACGTTTTTTATACTTGAACACCAATGATTGAATTGAGCCTTAAGACTAAAACTGTTCGTGACAATGCAGTGTCTCATGCCCCGTATTGAAAAGTGATCAGCATTATATTTTGACAACAAATAGCAGCAATGGTCATTTTATGGATATGTGTACATGATATTTTTGGTATTGTGTACATGAATCTTGCTCAGTTTTAGTACGGTTTAGCTACTTGCACTTTAAAGTACAGATGACATATTGCACACAATCCCAGTGAGCCATACTGTAAGCCATTTTTCATACAGTAAATCATGATGACACTTATCACCAAAGAATGAACATAAAATGAGCATACGTTGTGACATACAgaacatgtttttcatttaaaagtttcaaaACACCAGTCAAtttggttttattataaatatcataaaatatgtttgGTTATCCACGACTTCGTTAATGTCACGCATACTCTTAATACGCTTGCTGTAGATACAGATGGGTCgcaattatatactgtatatcaagTACTCAATCACGGTTATTTTAAAGGCTAAATTAAAAGGGAAATTTTTGTCCTTCATTTTATGTCGATTTTGTCTCGtaacattttttcctttttttactttatgttaTGACTAAATAAACATTGACGccaaagtgtttaaaaatatgaattattatgcCTTAATCTTTTTCCCCACACATATTGTACCTGATTCCAAGTGGGTAGCTCTcttttaatacaatattatattatattatattatattatattatattatattatattatattatattcagtgTCGAGGGGTGACTAGTTACATGTCTGATGCCA

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 38-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225313.1 True 4133 mRNA 0.44 4 12665001 12673819

Neighbor

gene id symbol gene type direction distance location
vps13d vps13d,LOC107703069,LOC107687459,LOC107712684 coding downstream 3869 12622070 ~ 12661132 (-)
rcc2 rcc2,LOC107687402,LOC107703073,LOC107712686,LOC107737572 coding downstream 103326 12555411 ~ 12561675 (-)
rnf207b rnf207b,LOC107591112,LOC107712689,LOC107593377,LOC107737674 coding downstream 111271 12546071 ~ 12553730 (-)
LOC122328351 LOC107737705,LOC107712654,LOC107703076,LOC107712673,LOC107593382,LOC107593415,LOC107687469 coding downstream 133440 12521821 ~ 12531561 (-)
her12 LOC107703051,LOC107591151,LOC107737706,LOC107593438,LOC107687468,LOC107712674 coding downstream 145808 12516922 ~ 12519193 (-)
ephb2a LOC107703068,LOC107593373,LOC107687404 coding upstream 1000 12674819 ~ 12725051 (-)
phc2a LOC107737567,LOC107591107,LOC107703065,LOC107717766,LOC107593370 coding upstream 97971 12771790 ~ 12810569 (-)
LOC122328520 LOC107591107,LOC107703065,LOC107737567,LOC107717766,LOC107593370 coding upstream 237251 12911070 ~ 12930813 (-)
LOC122328487 LOC107717767,LOC107687461 coding upstream 262502 12936321 ~ 12940885 (-)
spsb1 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC103042472,LOC107591103,LOC107737563 coding upstream 393508 13067327 ~ 13080224 (-)
G157255 NA non-coding downstream 44944 12619019 ~ 12620057 (-)
G157224 NA non-coding downstream 131022 12533758 ~ 12533979 (-)
G157222 NA non-coding downstream 135508 12524479 ~ 12529493 (-)
G157106 NA non-coding downstream 412065 12252731 ~ 12252936 (-)
G157104 LOC107737579,LOC107565833,LOC107672049,LOC107712694,LOC107593419,LOC107687392 non-coding downstream 413020 12246217 ~ 12251981 (-)
G157295 NA non-coding upstream 179420 12853239 ~ 12853501 (-)
G157298 NA non-coding upstream 180478 12854297 ~ 12855852 (-)
G157349 NA non-coding upstream 356047 13029866 ~ 13040397 (-)
G157353 NA non-coding upstream 389835 13063654 ~ 13063904 (-)
G157357 NA non-coding upstream 429292 13103111 ~ 13103551 (-)
G156985 NA other downstream 740351 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 807033 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other downstream 863369 11799922 ~ 11801632 (-)
LOC122328546 rpl10 other downstream 918381 11741400 ~ 11746620 (-)
G157367 NA other upstream 467259 13141078 ~ 13217408 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other upstream 606437 13280256 ~ 13282327 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 1548990 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 1653147 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 1896528 14570347 ~ 14589622 (-)

Expression


Co-expression Network