dhh (dhh,LOC107708800,LOC107571723,LOC107716210,LOC107681955,LOC107563640,LOC107695806)


Basic Information

Item Value
gene id dhh
gene name dhh,LOC107708800,LOC107571723,LOC107716210,LOC107681955,LOC107563640,LOC107695806
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16043260 ~ 16048908 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225337.1
AACACATGTCGAAGCAGAGTCAGAGCACTCGGACAGCAAAGGAATGAAAGCATGTTTGAGCGCGACTATCAGGCAGGGGGACAAACAGAGACGCGCGCTGTGAACCTTACCTCAGAAAACGCTGTTTCGCGCGGAGCTGTCCAAGGTGGAGTAGGATGATGGGATGAAGCACCTGTTGCTATGCCAATATCTACAAAACGAGAACGAGGATGCAATCAACCCACCTCTGCCCGGAATGCTGAAATCTGGCTTTCTAAATGGATTGACCCGCGTAAGCGTTAGATATTATATGATAATTAGATGCAAAACCTTTAAGTTTTAACATGGCTGGTCGTCGGATGTATTTATGTTAAACTAAATAATCAGTTTAATCTGGAAACCACCAGGCTACACTTTGGTCAATGATTCACGAGGCTAATCCCCACGATTGCCCGTTTTAACGCAACGCCGTGATATGGACGTGGAAAAGGTCAGTTGTGTTAACGAAATGCCACGAGGTGCTGGCAGAGACGCTCGCGCTGCAGGGCTCGCGGCTCGCTGATCCCCTCACACGCTTCACGCGCGCGCGTCAATGACGCTGGCTCCTTGGTTAAAGCTGGCGAGGCTCGGCCTGCTGACTGCCTGGCTTTATTCGTGGCTGCTGGTGGAGGGATGCGGACCGGGTCCAGGTTACGGCACTCGCCACAGGCAACGCAAGCTGACCCCGATGTCTTACAAACAGTACGTGCCCGGTGTCTCTGAGAACAACCTGGGAGCGAGCGGAAGAGCGGAAGGCAGGATAACGCGCAGCTCGGAACGCTTCAATGAGCTCGTGTGCAACTATAACACTGACATTGACTTCAAAGACGAGGAACACACCAAAGCTGACCGGTTCATGACCAAGCGCTGTAAGGACTGCCTCAATAAACTGGCAATAGCAGTAATGAACCAGTGGCCTGGGGTCCGACTGCGAGTGACGGAAGCCTGGGACGAGGATGGCCACCATCCTCCTGGTTCTTTGCATTATGAGGGCCGTGCGGTTGACATCACCACCTCAGACAGGGACACAAAAAAATATGGACTACTTGCACAGTTGGCAGTTGAGGCTGGATTTGACTGGGTGTACTATGAATCCAAGTACCACGTGCACTGCTCTGTCAAAGCTGATCAATCTGTAGCTGTAGAAAAAGGTGGCTGCTTTTCAGGATCAGGACTTGTGACAGTGGCTGATGGCGTGCAAAAACCTATGTCGTGTTTGCGGCCTGGCGAGAAGGTGCTTTCCTTGTCCGAGTCGGGTGAAGTTGTTCTCAGTCGGGTACTTCTCTTTTTACATCTCGACAGAAAGAGCAGAAccactttctttatttttaccacTGAAAATGGAAAACGAATGGCGCTTACTCCCAATCACCTAATTTTTGCGGCTCCCAATCTCAAACTGCACCACCATGAGTATGAAGCTATGTTTGCCAAAAAAGTTAGGACTGGGGACTACATACTTACTACTGATGACACCAAAGGGCTTCGGCAATCTAAAGTGGTCTCAATTTCACTGGAGGAGAGGATGGGGGTTTATGCTCCTTTGACAGAACATGGAAACTTATTTGTGGATAGCGTGCTGGTATCCAACTACGCTTCTGTTGAGGATCACAGACTCGCACACTGGGCATTTTGGCCTTTCCGtgttcttttttgctttttccagACAGTAATGGAAGAGAACTCCCAAAGGACATCGGCTAACAGTAGTGCCGTGGTCCCTGATATCTGTTCCACAGATCAGACCTTCCTCACAAACGTGATGCACAATAGTTCTTCCAGTACATGCAAGAAACTCCCAGATGTCACAGAGGAAACAGAAAGTGAACATAGGTTTTTGCAACAAAAGGTTTACTGGTATGCAAGGCTTTTGCACACATTAGGACAGCTATTTCTTGACCCTCAGAAGTTTTACTGACGGTGAATATGCAAACATAATGTcaactgcaaaataaattactgcttttttaaaaactactgACCAAAAAGGAAATGCAATAAGCACTATAGCTGGTATAAGCACTCACCACATATAAGGTCCAGTTACAGttacttattacatttaaaattgtaaatgtgttGCAGTTATGCATATTCTTTATGTGAAATAttcagtataataaaaaaaaaaatcatagttttTCAGATACGATTTGTCATATTGAATAATCACCATATGGACTATTATGggattcaaaatgtatttttatgtttgttttacttttttcagagataatatttatttttatacttttggattcataatatatatttcatttaaactgttCATGTAGTTCTGATTATTTGTTATACCAAACAAAGACTGATACAGTTGTTATAatctatttttagttattttagctcATTGTgttgcaaaataaacatgaccTGCTCAGATTTTTATTCCCAACAAACACGTTTTATTCTTACTAGAACTGTACCGAGTACAAAATGCCGTGTCTGTTCCCAGATTtaccaaaaaacacaaattgtgGATAAATTAACATATTACATCATGTCTTGTATAtggtaatgttaatgttttaaacattgtgtTAACAGAGTTTAACCATGTCTAATGACTAATTGTGGTTCAATTCCGATGTCAAAAATCAACAGCCTTGTGCTAAACAAGAAGTTACTGCCCGGCTTTTGCTAAGTTCATCACACCCCCTTGTGGACACCAAAGAATACACCGCTGTCCATTCTAACGTGCTTAGTATGATTTGCCATCTTTCTGTTCTGAAAAACAGCTTCCTTGaattaataatacatgtaaaactttaataaattattatttgtaata

Function

symbol description
dhh Predicted to enable calcium ion binding activity and patched binding activity. Predicted to be involved in cell fate specification; regulation of gene expression; and smoothened signaling pathway. Predicted to act upstream of or within cell-cell signaling; intein-mediated protein splicing; and protein autoprocessing. Predicted to be located in extracellular region and plasma membrane. Predicted to be active in extracellular space. Is expressed in testis. Human ortholog(s) of this gene implicated in 46,XY sex reversal and 46,XY sex reversal 7. Orthologous to human DHH (desert hedgehog signaling molecule).

NR:

description
indian hedgehog protein-like

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0007275 multicellular organism development biological_process
GO:0016539 intein-mediated protein splicing biological_process
GO:0006508 proteolysis biological_process
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225337.1 True 2824 mRNA 0.43 3 16043260 16048908

Neighbor

gene id symbol gene type direction distance location
lmbr1l lmbr1l,LOC107708860,LOC107681941,LOC107716206,LOC107695807 coding upstream 4746 16024223 ~ 16038514 (+)
rps26 rps26,RPS26,rps26l,LOC107563646 coding upstream 34526 16007616 ~ 16008734 (+)
wnt1 wnt1,LOC107563635,LOC107716204,LOC107695811,LOC107681946,LOC107745472,LOC107570486 coding upstream 42489 15994736 ~ 16000771 (+)
LOC122328928 LOC107716074,LOC107563642,LOC107695755,LOC107571700,LOC107687557,LOC107745480 coding upstream 175159 15862039 ~ 15868101 (+)
mipa mipa,LOC107745456,LOC107570312,LOC107668565,LOC107695819,LOC107716194,LOC107571785 coding upstream 307040 15733686 ~ 15736220 (+)
kmt2d kmt2d,LOC107681934,LOC107695802,LOC107716211 coding downstream 1657 16050565 ~ 16083002 (+)
arhgef25a arhgef25a,LOC107570569,LOC107708856,LOC107681953,LOC107716212,LOC107695729 coding downstream 81193 16130101 ~ 16188525 (+)
slc26a10 slc26a10,LOC107708797,LOC107681935,LOC107716215,LOC107586569,LOC107695728,LOC107570587 coding downstream 165048 16213956 ~ 16222046 (+)
c1galt1a c1galt1a,LOC107708852,LOC107571731,LOC107586568,LOC107695751,LOC107716090 coding downstream 186858 16235766 ~ 16240924 (+)
birc5b birc5b,LOC107571769,LOC107708796,LOC107695794,LOC107716091,LOC107586566,LOC107681933 coding downstream 285593 16334501 ~ 16335613 (+)
G158117 NA non-coding upstream 77496 15964752 ~ 15965764 (+)
G158115 NA non-coding upstream 93839 15896647 ~ 15949421 (+)
G158113 NA non-coding upstream 105389 15934939 ~ 15937871 (+)
G158110 NA non-coding upstream 161368 15880663 ~ 15881892 (+)
G158074 scn8aa,LOC107695818,LOC107563626 non-coding upstream 215327 15818461 ~ 15827933 (+)
G158423 NA non-coding downstream 490628 16539536 ~ 16539832 (+)
LOC122328367 NA non-coding downstream 496933 16545841 ~ 16573057 (+)
G158430 LOC107660256 non-coding downstream 500331 16549239 ~ 16549606 (+)
G158434 NA non-coding downstream 506509 16555417 ~ 16555642 (+)
G158437 NA non-coding downstream 559917 16608825 ~ 16611041 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other upstream 19866 16022199 ~ 16023394 (+)
G157620 NA other upstream 738710 15300704 ~ 15304550 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other upstream 1047115 14992350 ~ 14996145 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other upstream 1285043 14725910 ~ 14758217 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other upstream 1328705 14712147 ~ 14714555 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other downstream 533062 16581970 ~ 16607408 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other downstream 572290 16621198 ~ 16664314 (+)
LOC122328551 atf7b,atf7a,LOC107711055,LOC107585125,LOC107740570,LOC107667392,LOC107673513,LOC107582698,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107563644,LOC107695816 other downstream 586538 16635446 ~ 16669648 (+)
G158486 NA other downstream 682438 16731346 ~ 16732884 (+)
G158524 NA other downstream 1033297 17082205 ~ 17082655 (+)

Expression


Co-expression Network