LOC122329135 (LOC107737653,LOC107671959)


Basic Information

Item Value
gene id LOC122329135
gene name LOC107737653,LOC107671959
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11100072 ~ 11105175 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225340.1
CGAGGCTtcagattaaaatTAGCAGTTTCTTGACTGATACAGTCTTCACATTATGATGACCAAATTCATTTTTCTAGCTGGTGTTTCCCTGGCTTTGTTTCACTTTggatGGGCCTCTCAGCTGGCATGCTACTACACAAACTGGTCTCAGTACAGACCTGGCAATGTCAAATACATGCCAGAAAATGTGGATCCATATCTGTGCACtcatttaatttatgctttttcCATTATAAGTAACACAAACGAGCTGAGCACTTTTGAATGGAATGATGAATCTCTCTACAAATCTTTCAATGGACTAAAGGAAAAAAATCCTGGCTTGAAAACTCTCTTGGCCGTAGGAGGATGGAACTTTGGCACAGAACGGTTTAGTATCGTGGTGTCTACATCAGAAAACAGGCAGACGTTTATTCAGTCCTCCATCCCATTTCTGAGGAGACATGGCTTCGATGGTCTGGATCTGGACTGGGAGTATCCAGGTTCCCGTGGGAGTCCCCCTGAAGACAAGCAAAGATTCACTCTTCTCTGTAAgGAGCTCTTGGAAGCTTTCGAGGCAGAGAGCTCTGCCACCGGACGCCCCAGACTCATGCTCACTGCTGCAGTGAGCGCTGGGAAAGGAACCATTGATGCTGGTTATGAAATTGCAGAAATTGCCAAGTATTTGGACTTCATTAATGTGATGGCCTATGACTTCCACGGATCGTGGGAAAGTGTCACCGGTCACAGCAGTCCTCTGTACCATGACTCTGGAAACCCAGGGGATAATTACACTACTGATTTTGCAATGACATACTGGAGAGATCAGGGAGCGCCTTTGGAGAAGCTGAGGATGGGTTTTGCAGCATACGGAAGAACCTTTCGCCTGTCTTCACTGGATGGAGCCAGTGGAGCTGGAGCTTCAGCTAGTGGTCCTGCATCAGCTGGAATACACACCAGAGAGGCCGGATTCTGGTCCTATTATGAGGTTTGTGCTTTTCTTCAAGGAACCTCAGTGAAATGGATTGACGATCAGAAAGTTCCTTATGCAACAAAAGAATATGAATGGGTGGGATTTGACAACAAGGAAAGCTTTCAGACTAAGGTGAACTACCTAAAAGAGAAGAGGTTTGGAGGAGCTTTCGTCTGGGCTCTGGATCTTGATGACTTTACAGGACAGTTCTGTGAGCAGGGCAAATACCCTCTCATCAGACATCTCAGTACACTTCTTAATATAGATTTCCCTCCTGTTTCTTCAAATACAACACATGAGCCTGATGAGAACACAACAACAGCATCCACTACTGTAGTATCTCATGCCACAAGACCTCACGTTGTCCCCACAGTCCTCTCAGACTTCTGCGTTGGCAAAACGGATGGGATATACGTAAACCCAAATGAGACTACTTCCTTCATTCAGTGTTCTAATAACAAGCTCCATAAACAGAACTGTCCTGTTGGGACTGTCTTTAATCCCAACTGCTCGTGCTGTGACTGGCCTAAGAATTAACCTCATGCTATCACTGTTCTACTCCTGCGAGGGAAACGTAAAGAACTTTGGCAGTTTTTTGCTATATTGTTTTGTGACAGTAATGGCATAATCATTTCACACTTTACCtttatgtttttctatttttaataaacagctaTGATATAATGCTACCTTCATGAAATAATAACAACCTTCATTTTGTTGTGACTTAAAAAGTAAGCACGGTCCAACAtgcctaattaaaaaaacctgaTAAGCA

Function

NR:

description
PREDICTED: acidic mammalian chitinase-like

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG:

id description
K01183 E3.2.1.14; chitinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225340.1 True 1730 mRNA 0.44 12 11100072 11105175

Neighbor

gene id symbol gene type direction distance location
nfascb nfascb,LOC107672057,LOC107737654,LOC107741310,LOC107657041,LOC107560902 coding upstream 1530 11085866 ~ 11098542 (+)
naca naca,LOC107737655,LOC107671995,LOC107657042,LOC107563656 coding upstream 24141 11068486 ~ 11075931 (+)
LOC122329335 NA coding upstream 24335 11075662 ~ 11075737 (+)
LOC122329336 NA coding upstream 24906 11075091 ~ 11075166 (+)
prim1 prim1,LOC107741309,LOC107671973 coding upstream 37825 11058159 ~ 11062247 (+)
mfsd4ab mfsd4b,LOC107737687,LOC107671943,LOC107560864,LOC107741314,LOC107563649,LOC107656990 coding downstream 36304 11141479 ~ 11147587 (+)
LOC122329179 uba3,LOC107737645,LOC107672020,LOC108435248 coding downstream 50647 11155822 ~ 11161895 (+)
LOC122329091 LOC107560879,LOC107741317,LOC107657035,LOC107671941,LOC108436304 coding downstream 59467 11164642 ~ 11168458 (+)
LOC122328405 idh3g,LOC107671940,LOC108436344,LOC107560866,LOC108275983,LOC108276129,LOC108425561,LOC107593912,LOC107716150 coding downstream 158223 11263398 ~ 11268541 (+)
avpr2ab avpr2ab,LOC107672000,LOC107737642,LOC107657032,LOC107562472,LOC107741337 coding downstream 180156 11285331 ~ 11301933 (+)
G156551 NA non-coding upstream 64577 11033791 ~ 11035495 (+)
G156496 NA non-coding upstream 198249 10829167 ~ 10901823 (+)
G156432 NA non-coding upstream 371842 10727933 ~ 10728230 (+)
G156431 NA non-coding upstream 372908 10726918 ~ 10727164 (+)
G156417 NA non-coding upstream 396979 10702729 ~ 10703093 (+)
G156572 NA non-coding downstream 18917 11124092 ~ 11126634 (+)
G156568 NA non-coding downstream 43688 11148863 ~ 11152047 (+)
G156590 NA non-coding downstream 105866 11211041 ~ 11243036 (+)
G156592 NA non-coding downstream 113860 11219035 ~ 11313603 (+)
G156599 NA non-coding downstream 140376 11245551 ~ 11311487 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 14468 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 176084 10913904 ~ 10923988 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other upstream 399177 10698798 ~ 10700895 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 527826 10563344 ~ 10572246 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 545352 10551097 ~ 10554720 (+)
G156586 NA other downstream 69246 11174421 ~ 11177033 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other downstream 592239 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other downstream 625805 11730980 ~ 11732361 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 1141018 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 2988903 14094078 ~ 14126201 (+)

Expression


Co-expression Network