arhgef3l (arhgef3l,LOC107699573,LOC107712679,LOC107593396,LOC107565836,LOC107737584)


Basic Information

Item Value
gene id arhgef3l
gene name arhgef3l,LOC107699573,LOC107712679,LOC107593396,LOC107565836,LOC107737584
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12175329 ~ 12182648 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225351.1
AAGAGGAAGAGGGGAGGGCTGGGAGAGAGTGCACAttatcttttttgtcttttctttgaaaagctGGAACAGGTGCTTCTAAGATTTATGGTCAGATTTTGTGTGTAATAGTCTTCTAATTACTGCCGTTtcttttcataaacatttttggaGATGCTATgagaaaggaaaagatggaACTTGAAGAGACGGAGGCTGATATATCACCTTCCTGGTCTCCTGTATCTAGAGACAGGCTCCTCACGTGCGCCAACCTGTCAGATTTTGCAGGGaaaaaaagaaaacaagaccCAAGTAGCGATGCTGAGCTTTCAGCCCGAATCTTGGAGGACTGTGAAGACGATGACTTTCCCATCAGTGACCACATACAAGATTCAGAGGGTCCATGTAACAAAAGAGTCAAGCCGGTAGATAAAAGTGCTTCGGTCACTGGTATCATAACGCCGGTGAAGACCCCAGCTTTGAAACGCTTGGGCCAGTCTATACAGCGTTCTATCAGTTTCCGGACAGAGGCCCGGCCGTTGCCCCCAATGCCAATAAGAACACGTCAGAAGGCCTCTTCATTTCCACGCCGGCGGAGCAGCCAGCTGTGGAGCGATACAGTCGACAGCATGAGCCACGAGCTCAGTACCAAAGAGATCAAACGACAAGAGGTAATCTATGAGTTAACCCAGGGCGAGAAACAGCTCATTGAGGATCTAAGTCTAGTTAAAAAGGTGTACTATGAGCCAATGCTGAAATTGGACATCATGACAGAAAGTGAGCTGGGACAGATTTTTGGCACCCTTGATTCTTTAATACCCCTTCATGAAGATCTTTTAGCTCGTCTTGAAGGTCTTCGTGGAGCAGAGAAGACTGTGCAAGAAGTCGGCCCCACTATGATGGACTGGTTTCCATGTCTGGAGGCATACATCACATACTGCTGTAACCAGGTTGGAGCAAAAGCTCTGCTCGATCAAAAGAAGCAGGACAGACGGGTCGAGCATTTCCTGCGGCTGTGCCAGGAGTCGTCCTTCAGCAGAAAGCTAGACTTGTGGAATTTTCTAGACTTGCCTCGCAGCAGGCTGGTGAAATACCCTCTGCTGCTGAAGGAGATTCAGAAGAGCACTCCACCTGAGCATCCAGATGAGGAAGCACTGCCACATGCGATGGAACTAATCCAAAGGATTATAACAGAAGTCAATCTTAAAACTGGAGAGGCTGAGTGTCAGTTTTACAGACGGGGTCTGTGCTACTCAGAAGACAGTCAGAGGGTTCCAGAAATCCAGGCATCTCGTTTTTTATACTGCCACGGTGAACTGAAGAGCACTAAAGGACAGAAGCTGCACGTGTTCCTGTTTGAGCTGGTATTGGTTTTGACCCGACCAATGGCACAGGATAGGGAAGGACCAGTCCAATTCCAGGTGTACCGTCAGCCCCTCCCAGCTGCTCACCTCCATCTGGAGGACCTGCCTGATGGGGAACCAAGCAGCTCTGGATCCTTTCGTGGGGCTTTTACGGGCAATGACAAAGTGAAGAACTGCTTTCGTGTGAGTGCCACAGGGCGTTCTAAGTCTCAATCCCACAGCCTGCAGGCTAATGACTCCTTCAATAAGCAGCAATGGATTTCATGTCTGCGCCAAGCAATGGTCCAGTCACGAGACAGACAGGCTCAAAGCAGCCACTGCAAACCCTCTGAGCGTTTAAGCCCTGACCCTGCGCTCTATAACAACATCGCTGAACTCAACCTTAACTCTGATGTGGAGATGCCAGACACATAGACCACGTCCACCGGTGCTTTCCCGTTCAAAGGTTCATTCACGAACACAGAACTTCACCGTTACTGTGACAGCTGACTTTCTCAGGACGAATGAGATCACACAGTTGCTGTCTTACACCCTTTCTAGAAACTGTGAGAATAACGTCATGTAGCTATATTTGTATACTCCACATGTGGATGGTTGTTGCTGTCAGATGTCTCAGATGGAGAATATTTCATTAGGCTTAtgctttttgcttgttttttcattcataGAGAATGCTGTGtcttatttgttaaatatatgttaGGCTATAGGTCATAAGAACCATCtcttcatcattttttttacaactttttattGCACACCATTTCTATCTCAcgtaattaataaacaataacatttgtGCAATCTGAATGGCACCTAATCTTAGATGAAGCCAGGATTTTTGTCATTGCATTTTGGTAGCATCAGTTTCAAGTCTTTCATTAATATAACCTGAATATGAGAGCCTAAATGCTTATTTTCTGATAGAAATCAGTGGGTTTCAAAAATCATTCCGACAAGTCAGGCGAACAGCTTCTTTCTAACACTCTCCTCAAGTGTGTAAGtttggagagtgtgtgtgaaattcTGTCTAAAAAGTCAGATTGCTTTACTGCAGCAATAAATGCAAGTGTACATCAATCCACTGTTATTGTGACAGTCATATATTTACGAGAGTAAAttccattcatttaattatagggggccctagaaaaaaaaaatctatatacgGGTGCATTATAGGAATTCTGTGGCACTTCTATGCCAGGAGGTATTCGTTccctttttcatttcagtgcatAATTGTTTCCGTTTTGTTTTCAATAAACTGACAACTTCCATAAAA

Function

symbol description
arhgef3l Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in positive regulation of Rho protein signal transduction. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in cytoplasm.

NR:

description
rho guanine nucleotide exchange factor 3-like

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225351.1 True 2631 mRNA 0.45 13 12175329 12182648

Neighbor

gene id symbol gene type direction distance location
uba1 uba1,LOC107737583,LOC107672015,LOC107565837,LOC107593395,LOC107699604 coding upstream 943 12157497 ~ 12174386 (+)
camkvl LOC107737586,LOC107672037,LOC107712704,LOC107593397,LOC107565838,LOC107699603 coding upstream 19029 12113746 ~ 12156300 (+)
adnpb adnp,LOC107737587,LOC107672026,LOC107565825,LOC107593398,LOC107699602 coding upstream 64148 12102317 ~ 12111181 (+)
dpm1 dpm1,LOC107671953,LOC107737709,LOC107712706,LOC107699600 coding upstream 73756 12099022 ~ 12101573 (+)
LOC122329002 LOC107737588,LOC107712700,LOC107672031,LOC107699598,LOC101884357 coding upstream 76556 12076253 ~ 12098773 (+)
usp21 usp21,LOC107737585,LOC107565835,LOC107593392,LOC107699606 coding downstream 449 12183097 ~ 12187125 (+)
ccdc30 ccdc30,LOC107737582,LOC107672059,LOC107699607,LOC107712696,LOC107565824 coding downstream 5846 12188494 ~ 12204119 (+)
si:ch211-112c15.8 NA coding downstream 30722 12213370 ~ 12220936 (+)
ttc34 ttc34,LOC107671969,LOC107737580,LOC107565827 coding downstream 39145 12221793 ~ 12228327 (+)
zgc:154075 zgc:154075,LOC107712677,LOC107699610,LOC107593441,LOC108434639 coding downstream 47320 12229968 ~ 12235977 (+)
G156933 NA non-coding upstream 414 12174530 ~ 12174915 (+)
LOC122328486 NA non-coding upstream 137441 12030146 ~ 12037888 (+)
G156881 LOC107737595,LOC107671985,LOC107568839 non-coding upstream 202407 11946684 ~ 11972922 (+)
G156843 tktb,LOC108410447,LOC107671986,LOC103046877,LOC107737598 non-coding upstream 248954 11827741 ~ 11926375 (+)
G156823 LOC107560942,LOC107737604,LOC107712727,LOC107672007 non-coding upstream 352485 11763707 ~ 11822844 (+)
G156931 NA non-coding downstream 21608 12204256 ~ 12205395 (+)
G157079 NA non-coding downstream 57201 12239849 ~ 12241401 (+)
G157081 NA non-coding downstream 63226 12245874 ~ 12246101 (+)
G157084 NA non-coding downstream 170442 12353090 ~ 12386381 (+)
G157265 NA non-coding downstream 546396 12729044 ~ 12787715 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 428759 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 442968 11730980 ~ 11732361 (+)
G156586 NA other upstream 998296 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 1089725 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 1251341 10913904 ~ 10923988 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 63545 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 1911430 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2117053 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2421145 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 2426881 14609529 ~ 15153978 (+)

Expression


Co-expression Network