usp21 (usp21,LOC107737585,LOC107565835,LOC107593392,LOC107699606)


Basic Information

Item Value
gene id usp21
gene name usp21,LOC107737585,LOC107565835,LOC107593392,LOC107699606
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12183097 ~ 12187125 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225352.1
TGTAATGAGAGCACAGCAACTCTTATACACTTTCAAATTGAGCTTGATGTTTGGATAGAAACACTGGCTGTCATTGAACATCAGTTGGAAAATAAGAAGAGACGATACTGGGCTtttaaggGATCATTGGCAGGGTTGCGCGGCACGCAGACGTGGTAATGCCAAGAGCTGAATCCACTGCAATGGACAACTCGTGTCAGGCCCTGTGTCGAACCTTAGTCACTCAAAATGGCCTTCAGCCAGAGAACGTGGACATTTCGCAGTCTGTGCTATACACATCCATCATGGGACTCCTGCTGGTGACAGACAATGAGAAAGAGCTGCAACTGGGAAATGGACAAGTTGGACTGCGTAACATTGGAAATACCtgtttcCTTAACGCCATCGTGCagtgtctctctcacactcgTAGTCTTCGGGACTACTGTCTGATGAGAACTTACCTTCAGGACAAACACTCCAACCAGGAACCTGGGCTTATGAATGAATTCTCTAAAGTTCTGGCTGGCTTGTGGGAATGTGATAGTGGGGAAACCACAGTGAATCCTGGGAAGTTTTATCATGTCTTTAAAGAGTCAGTGCCTTACTTCAGCGGCTATAGTCAGCAGGACGCTCAGGAGTTCTTGCGGTTCCTCTTGGACAGGCTTCATACAGAAATCAACCGTCGTCCAGCCAAACGTCCTGCAGTTATGGAAGTTAAAGAACCAGCATACACACGATTCAGGATTTCAGAAGAGGCCTTTGCAATGTGGCAGAGACATCTTGATAGGGATGACAGTAAAATTGTCGATTTGTTCTCCGGTCAGCTGCGCAGTTCTTTGCACTGTTCAGTCTGCTCCCATTACTCCAACACCTTTGATGTGTTTTGCGACCTGTCACTCCCCATCCCAAAGcagAAGAGTGACTATGGGCGAACTGTCACACTGAGAGAGTGTCTAGACCTTTTTTCCCAAGAGGAAAAACTTGATAAAGAAAACTCACCGATGTGTGAGCGCTGTAACCGTCGCACTGAGAGCACAAAGAGACTGACCATTCAAAGGTTTCCTAGGATCCTCGTGATACACTTGAATCGATTTGCCATGTCAAGGTACTCGATCTCAAAGAGCACGGTCCCGGTTTCTTTCCCCCTCAATGGGCTGGATTTAGGGCCATTTGGACCTGTTGACTGCGGTCCAGTGCTGTATGATCTTTATGCATTATGCAATCATTCAGGCACAGTGAATATGGGTCACTACACGGCTGCATGTCGAGAGGAGGAGGGCTGGTGCTATTATAATGACTCATGtgttggtGAAATAACAGAGGAGAAGCTTCAGTCAAATCAGGCGTATGTTCTCTTCTATGAGCTCAAAAACTGCAATATCACCAGAAAGTGAGGGcagaaagtgtgtttttagGGGAGACTTCGGTGATTATCTACCGAATTTCAGATACCACAGGAAAAAGTTGCACTTATGTTTGAAGAAAGTGAATGAGCTTGAAAAAAACTGGTCAATTTAcatcattacatttcattgtaCATCTATGACATTGAGGTATTTTTTTACTACACTaaacaatgtgttttattaactttatgcACTCAGGAAAACACACTACTTTAG

Function

symbol description
usp21 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Orthologous to human USP21 (ubiquitin specific peptidase 21).

NR:

description
ubiquitin carboxyl-terminal hydrolase 21-like

GO: NA

KEGG:

id description
K21634 USP21; ubiquitin carboxyl-terminal hydrolase 21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225352.1 True 1604 mRNA 0.45 13 12183097 12187125

Neighbor

gene id symbol gene type direction distance location
arhgef3l arhgef3l,LOC107699573,LOC107712679,LOC107593396,LOC107565836,LOC107737584 coding upstream 449 12175329 ~ 12182648 (+)
uba1 uba1,LOC107737583,LOC107672015,LOC107565837,LOC107593395,LOC107699604 coding upstream 8711 12157497 ~ 12174386 (+)
camkvl LOC107737586,LOC107672037,LOC107712704,LOC107593397,LOC107565838,LOC107699603 coding upstream 26797 12113746 ~ 12156300 (+)
adnpb adnp,LOC107737587,LOC107672026,LOC107565825,LOC107593398,LOC107699602 coding upstream 71916 12102317 ~ 12111181 (+)
dpm1 dpm1,LOC107671953,LOC107737709,LOC107712706,LOC107699600 coding upstream 81524 12099022 ~ 12101573 (+)
ccdc30 ccdc30,LOC107737582,LOC107672059,LOC107699607,LOC107712696,LOC107565824 coding downstream 1369 12188494 ~ 12204119 (+)
si:ch211-112c15.8 NA coding downstream 26245 12213370 ~ 12220936 (+)
ttc34 ttc34,LOC107671969,LOC107737580,LOC107565827 coding downstream 34668 12221793 ~ 12228327 (+)
zgc:154075 zgc:154075,LOC107712677,LOC107699610,LOC107593441,LOC108434639 coding downstream 42843 12229968 ~ 12235977 (+)
pax7b pax7b,LOC107672046,LOC107593389,LOC107687391,LOC107565832 coding downstream 65600 12252725 ~ 12311254 (+)
G156933 NA non-coding upstream 8182 12174530 ~ 12174915 (+)
LOC122328486 NA non-coding upstream 145209 12030146 ~ 12037888 (+)
G156881 LOC107737595,LOC107671985,LOC107568839 non-coding upstream 210175 11946684 ~ 11972922 (+)
G156843 tktb,LOC108410447,LOC107671986,LOC103046877,LOC107737598 non-coding upstream 256722 11827741 ~ 11926375 (+)
G156823 LOC107560942,LOC107737604,LOC107712727,LOC107672007 non-coding upstream 360253 11763707 ~ 11822844 (+)
G156931 NA non-coding downstream 17131 12204256 ~ 12205395 (+)
G157079 NA non-coding downstream 52724 12239849 ~ 12241401 (+)
G157081 NA non-coding downstream 58749 12245874 ~ 12246101 (+)
G157084 NA non-coding downstream 165965 12353090 ~ 12386381 (+)
G157265 NA non-coding downstream 541919 12729044 ~ 12787715 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 436527 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 450736 11730980 ~ 11732361 (+)
G156586 NA other upstream 1006064 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 1097493 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 1259109 10913904 ~ 10923988 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 59068 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 1906953 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2112576 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2416668 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 2422404 14609529 ~ 15153978 (+)

Expression


Co-expression Network