LOC122329156 (nup210,LOC107675171,LOC107684885,LOC107555788,LOC107564796,LOC107736952)


Basic Information

Item Value
gene id LOC122329156
gene name nup210,LOC107675171,LOC107684885,LOC107555788,LOC107564796,LOC107736952
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1282121 ~ 1344566 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225357.1
ATGCTTTCTTCAGAGAAGGTGTCATATGTGCAGTACACGGAGAAGGAGTACTTGTTGCAGTCTCCTGAGCAATCCGCCGCTCGCTGTCTTATTAAAGACAAGCTCCAGCGTATGAGAGTTCATCTGGACTGGGACGCTGGAAACCCGCCGTTCTCGGACTCTGTGACTAAAACACAACTCGAACCTGTGAAGATGCTGAACGCTCGTGCGCTCTTTATTCTGACCTTCATCTGCGGTTTGACAGACGCCGCCAAACTCAATATACCCAAAGTTTTACTACCTCTTGCCAGAAGCACGAAGATTAATTTTACACTGGAAGCAACCGAAGGATGTTATCGATGGTCGTCTAACAGGCCGGAGGTGGCCAGTATCGAGGCGCTGGATGTGGACGAGCGTCAGTGCTCTCATAAGGCGGTTCTTCAGGCTCGCTCCACGCAGCCGTCCAGACTCACCAGCATCATACTCGCCGAGGACATCTtgaccGGGCAGGTGCTGCGCTGTGATGCAATAGTGGATGTGATCAGCGAGATCCAGATCGTGTCCACCACGAGAGAGCTTCACCTGGAGGACTCTCCTCTGGAGCTGAAGATCCATGCCCTGGACTCCGAGGGAAACACCTTCAGTACTCTAGCCAGTCTGCTGTTTGAGTGGACGATCGTGAAGGATGCGAGATGGCCGTTATCCTTCACATccttatttttggttttatgtcTTCTCCTGTTTCTGTCTAGGGTGCTGAGGTTTGCAGAGTCAGCATACACTCCTCCTGCATATATCTCAGAGATGGAGAGAGTGGGACATCAGGGAGATATTATCCTAGTTTCAGGAATCAAAACCGGTCATGCCAAGCTCAAAGCCAAAATACAAGAAGCAATCTACAAGGATGTTGGTGCTGCTGAAGTCAGATTGCTGATTCTGGAAAATATCCTTCTCAGTCCTGCGTATgacatttatttgcttgctgGCACCTCCATCAAATACAAGGTCCAGAAGATTCGTCAGGGAAAGATTACAGAGCTGTCCATGCCCTGTGATCAGTATGAGCTTCACCTTCAGAACAGTGTGGTGGCCCCTGAAGGAAAACCAGACGCTCCAGTGGCAGCCCTGGACCGGAGCAGCTCCACGGTGCTTGGGCTTCAGCACGGACACACCAACATCGTGCTGGACCACAAGAGTCTTGGGATGCAGGGCGCCTTGCGACTTCCCAACAGCACCATCTATGTCGTGGAGCCTGGATACTTGGCATTCAAGATTCACCCTGAGGATCGCTGGGTCCTTGAGACAGCGAGGAAATACGAGATCTTCATTGAAGTGTTTGATAAGTCAGGACACAAGATTTACCTCTCTGATAATATCCGTATAGAAGCCACGTTCCCCACAGAGTACTTTGAGGTTCTGGACTCGTCTGTTAATGGATCTTACCACCATGTGAAAGCTTTAAAACGTGGTCAGACCATCATTGATGGCACGTTGAAAGCGGTTGTTGATCAAACAGGAAGTGTCCACGCTCTCTCTGTTCCTGTGCGTAATGAGCAGGATGTGGAGATCTATGACCCCATCGTCCTTACTCCTGCCATCCTCACGTTCCCATGGCAGCCTAAAGAGGGAGCGTACCAGTACACCATCAAGGCGACTGGAGGAAGTGGCAACTTCAGCTGGTCATCCAATAACTTGGCAGTTGCCACCGTTACAGTAAGAGGCATGATGACCACGGTCAGAGACGTTGGAGTCAGTGTGATTTATGCCCATGACATGAGAAACCCGCTGCACTATGGAGACATGAAGgtgTATGTGATCGAGCCGGTGGGGATGGAGTTCAGCCCGTGTGTGGTGGAGGCCCGCGTGGGCTTGAGTCTGGACCTGCCGCTGCGAATATTCGGTCAGCTGGCTGGAGAGAGAGTGACTCTCAGCGACTGCTCTCACTTCGACATGCAGGTGGACATGGAGAACCACGGCGTCTTTCAGCTGATGGAGGGTCGACTTCCCCCAGGTCAGGGCTACTGCAGTGGGGTTCGAGTTAAGGCCTTGACCTCCACTTACACCAACCTGTTGGTTAGCTACACCCACAGTAACGTTCACCTCAGTGCGAAGATCACAGTTGCTGCCTACCCCCCTCTTAGGCCGATTGACCCAGTGTCTGTGGCTGTGGTGACGCTAGGCTCCTCCAAAGACATGACGTTTGAAGGAGGGCCCCGACCCTGGGTGCTGGAACCCTCCAGGTTCTTCAGAAACCTGACGGCTGAGGACCACAGCAGCGTCGCACTGTCTCTGTATGGACCCGCCTCGCGAACATACTCCAGGCATCTGGTCAGAGCCACGTGCCAAGCTCTGGGAGAACAGGTCTTAGCAGTGACTGTTGGAAACCAGCCCACTGTGACGAACCCCTTCCCTGCTGTGGAGCCAGCTGTGGTGAAGTTTGTGTGTGCACCTCCGTCACGTCTCACTCTGACACCCATCTACCTGAACCCTCAGCTGGATGTGTCCTGCCCTCTGCTGCAGCAGAACAAACAAGTGGTGCCAGTTTCCAATTACCACAACCCAGAGCTGGATGTGTCAGCCTTTGACCAGCAGGGCAGGAAGTTTGATAACTTCAGCTCTTTGAGTATGATCTGGGAGTCTTCCAAAGTTTCCCTGGCGAGCATCGAACCAACCATGCCCATGCAGCTACACACACACGAGGATgacaacaaacagaaaaaactcCACGGTCATCAGATGGTTCTTGTCCATCGTGAATCAGGTGTGGCGGCCATCACTGTGACCGCAGTCGGCTATCAAACATCTCACCTAGAGGCAGCAGCCGTTCTGAGTGGAtttGATCCTCTGAGCCCCGTCTTTGCCACTCTTGACCTGCTGTTAGTGGAGGACGTGAGGGTGACCCCTGACACCATCACCATATACAACCATCCTGATGTGACGGCCGATCTGGTCCTGCAGCAGGGTTCGGGTTATTTCTACGTCAATGCGAGTGTCCAAGGAATTGCAGACGTCATGTTCCAGGAGTCCCAGGGAATTGCTCAGGTGGTCCCGGCTCAGGCGGGGGTCCTGCAGGTGATGGTTCATGACCTCTGCTTGACCTTCCCTTCTCCTGCTACGGCAACAGTTCACATCTCTGATATTCTGGAGGTTTATGTGCGAGTGGTCGACAAGGTGGAGATCGGCAAGTCGGTGAAAGCATATGTTCGGGTTTTGGATGGCAACAAGAAGCCTTTCCTGTCCCGATATTTCTCTGTCATGGACCTGAAGCTGAGGGCAGCGTCCTCCATTATATCCCTTCAAGCTCTGCCTGATTCGTCAGAGGAAGATACGGACACATTTCTGGTCAAAGGTCTGGTGATCGGACAAACTAGCGTGTCTGCTGTTGTCATAGACAAGAATGGCAGAAAAATCACCTCTGCACCCCAGCAAATCGAAGTATTTCCTCCCTTCAGGCTATTGCCTAGGAAAGTCACTCTAATAGTCGGAGCAATGATGCAGATCACATCAGAGGGAGGCCCACAACCCCAGTCCAACATCCTCTTCTCTCTGTCCCACGAGAACATCGCCTCTGTCAGCTCTCTGGGGCACGTCAAGGGTCTGTCTGTGGGCAACATGAGCGTGACCGGCGTGGTCCAGGCGGTCGACACAGAAACCGGCAAACTGGTGGTGGTGTCGAAGCCTCTTGAATGCCTGGGTCAAGAGCTGATGGAAGAGAACGAGGAGAGCCAAGAACCGAGTGAAGTGGAGGAGGAACATCTTGACAAACCTGGAGAACAACCTTTGAGTAGCTCAAAGAATGAAAagacctttttaaagaaaaaaagagccaAAAAGAGCCAAGAAATCACTCGCCTGCACTCAtgcgggaagagcttcgcACAATCATCAAACCTTCAAAAACACATGAGAagtcacaccggagagaagccgcaCACGTGTGTTCAGTGTGGGAGGAGTTTCACAGAAAAACTACATCTTAAAGTACACATGAGAATCCACGCTGGAGAGAAGCCATACCCATGCGATAAATGTGAGAAGAGTTTCAAGTACCTTAAGATTCACGTGAGGATCCACCCCGGAGAGAAGCCATTCGCATGTGATCGGTGTGAAAAGAGATTCGGTTAA

Function

symbol description
nup210 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of nuclear pore. Orthologous to human NUP210 (nucleoporin 210).

NR:

description
PREDICTED: nuclear pore membrane glycoprotein 210-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225357.1 True 4104 mRNA 0.52 29 1282121 1344566

Neighbor

gene id symbol gene type direction distance location
b4galt5 b4galt5,LOC107736963,LOC107684873,LOC107656676,LOC107566184,LOC107725076 coding downstream 97455 1165023 ~ 1184666 (-)
zgc:113278 zgc:113278,LOC107714267,LOC107555798,LOC107736961,LOC107656677,LOC107684897,LOC108427771,LOC105906438,LOC107564801 coding downstream 186683 1087192 ~ 1095438 (-)
arl6ip5b arl6ip5b,arl6ip5,LOC107684895,LOC107656678,LOC107736957,LOC107564791,LOC107555805,LOC102786473 coding downstream 200376 1077808 ~ 1081745 (-)
srsf6a srsf6a,LOC108276344,LOC107714268 coding downstream 206454 1070758 ~ 1075667 (-)
si:ch211-10d23.5 LOC107675163,LOC107736956,LOC107564805,LOC107555797,LOC107684905,LOC107714265 coding downstream 211917 1065562 ~ 1070204 (-)
LOC122328434 NA coding upstream 17436 1362002 ~ 1371474 (-)
LOC122329157 NA coding upstream 50863 1395429 ~ 1401790 (-)
LOC122328511 LOC107690110,LOC107567958,LOC107724207,LOC107578799 coding upstream 138146 1482712 ~ 1494028 (-)
LOC122329158 NA coding upstream 209696 1554262 ~ 1557987 (-)
LOC122329159 LOC107678070,LOC107571224,LOC107705859,LOC107571225,LOC107678080,LOC107738794 coding upstream 261711 1606277 ~ 1608631 (-)
G153967 NA non-coding downstream 74534 1206700 ~ 1207587 (-)
G153966 NA non-coding downstream 75519 1205479 ~ 1206602 (-)
LOC122328476 NA non-coding downstream 318544 960274 ~ 963577 (-)
G153893 cnbp non-coding downstream 382355 841719 ~ 899766 (-)
G153911 NA non-coding downstream 506071 770513 ~ 776050 (-)
G153984 LOC107727750,LOC107691341,LOC107566873 non-coding upstream 44796 1389362 ~ 1393135 (-)
LOC122328606 NA non-coding upstream 75291 1419857 ~ 1420454 (-)
LOC122328609 NA non-coding upstream 249046 1593612 ~ 1594209 (-)
LOC122328398 LOC107678070 non-coding upstream 260046 1604612 ~ 1606221 (-)
LOC122328412 LOC107678070,LOC107571224,LOC107571225,LOC107678080,LOC107705859,LOC107738794 non-coding upstream 264594 1609160 ~ 1610175 (-)
l3mbtl1 l3mbtl1,LOC107736954,LOC107564793,LOC107684891,LOC107675169 other downstream 217347 1053377 ~ 1064774 (-)
vgll4a LOC107675174,LOC107736947,LOC107713758,LOC107684880,LOC107555803,LOC107574679 other downstream 399937 865477 ~ 882184 (-)
ndnl2 ndnl2,LOC107736943,LOC107568481,LOC107714263,LOC107660884 other downstream 496242 779085 ~ 785879 (-)
smim29 si:dkey-226k3.4,LOC107690111,LOC107567962,LOC107724208,LOC107738791,LOC107678078,LOC107571229 other upstream 163132 1507698 ~ 1512329 (-)
LOC122328833 LOC107669693 other upstream 758144 2102710 ~ 2116883 (-)
LOC122328838 LOC107680059,LOC107748448,LOC107565963 other upstream 1424916 2769482 ~ 2839047 (-)
LOC122328849 LOC107718007,LOC107687303,LOC107571802,LOC107748430,LOC107680054,LOC107565975 other upstream 1442730 2787296 ~ 2798533 (-)
si:zfos-905g2.1 si:zfos-905g2.1 other upstream 1525052 2869618 ~ 2874758 (-)

Expression


Co-expression Network