rnd1a (rnd1a,LOC107657046,LOC107737660,LOC107563659,LOC107560900,LOC107672025,LOC103027302,LOC108435239)


Basic Information

Item Value
gene id rnd1a
gene name rnd1a,LOC107657046,LOC107737660,LOC107563659,LOC107560900,LOC107672025,LOC103027302,LOC108435239
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11041080 ~ 11049656 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225380.1
CGCTGATTGGATAACAGAGCTGTATAAATTGCCGCAGTGCCGTATTTCTCTCTTTCGTGGAGATTTAGTCCAAACCCCAATGCGGTCTGAACAAACTGCCCAGGGCCGTCATACGAGAGAGCCGTCGCGTACAGGACCGTCTTATATACAATGAAGGAGAGAAGAATCAGCCAGCCTTTGGTGATGCGTTGTAAACTGGTTTTAGTAGGAGACGTGCAGTGCGGGAAAACCGCAATGTTGCAAGTCTTAGCCAAAGACTGTTATCCTGAGACATACGTCCCAACAGTGTTCGAGAACTACACAGCTGGACTGGAATTAGAGGAGCAGCGCGTTGAGCTCAGTTTGTGGGACACTTCAGGTTCACCGTATTATGATAATGTCAGGCCACTCTGCTACAGTGATGCTGATGCAGTTCTGCTCTGCTTTGACATAAGTCGTCCTGAGACCGTCGAGAGCTCTCTGAAAAAGTGGAAAGCCGAAATCATGGATTTCTGCCCCAGTACTCGAATAATTCTAGTCGGCTGCAAGACGGACTTGCGAACAGATGTTTGCACATTGATGGAGCTGTCCAATCAGAGACTGACGCCCATCTCCCATGAGCAGGGCACCTTGTTGGCCAAGCAGGTAGGAGCAGAGGTGTACCTGGAGTGCTCTGCATTCACTTCGGAGAAGAGCATCCACAGCGTGTTCCGCTCAGCGGCACTAACATGCCTTAACAAACTGCAGCCCCCTATAAAGCAAAGCCCCACTCGCCGGCTGTCCAAACGCCTGCTTCACTTGCCCAGCAAAGCAGAGCTCCTGACCTCCTCCTTCAGCAAGGAGAGAACCAAGAGCTGTTCCATCATGTGAGCTCTATGCGCGCCACTCCAACTCCAGAAAAAACCTTATTTTCGCTCTTCGAAAGTGTTGAGGGGGGGTGTGGAGAAAAGGAGAGGTCATGACTTTTAATGACCCCTCCCTCTCTCTACActtatgtttttcttcttccattCTGACACCCCACCTGCAAACACACTCATCCCAACAATTAAGAGCTGCTGCCATTGTTTAAGGTTTTCGGCTGTTACACATCCTCTTTACCAGCCTTTACATGAGCTGCATTTTGTATCAGTGAACAAAACAGTCAGTCGAAAAACGAAATGTACAGGACTGTCTGTATTTTTATGGGTAGATAGCGTGGGAATGAGGGTTGAGCTGTGAAcgtaatttaatgtttaaagaaaGAGGATGTGTTACACAGTACGCACTTTAGTGAACATGGATGCGATTGTTGAATGGAAAGCGAGAGGATGATTGAATACAGGTTGGCATTAGTTACTGTTTCAGTACAGAATTATGCTTTGCTTGTATTGGCTTGCACTGATCTACGATGTGAGAACTCATGCAAGCATGAGGGGAGGAGCCAAACAAGATTTTATGTCCTCCTAAAAAAGGCGGACAATGTTATAAATCTGCTAAATAAAGCATCCAATCACATTGGTACATCCAGATGTATTGGACATGCTGACacactctttcactctctctctatctttacTGTAGTCCTTCATGCGCTTTCTGCCCCAAGAGAACAGGTCATAAATCTCAGCCAATGAGAAGAAGCCCAGCATCGCCGGGCCATTTCTCAATAGAGCAGGAGTTATTGCCACAAAGACACTTTCCAGATGTTCCAACTGCTCTTTTATAGAAAACGAGATCTTTTAGTAAAGTAATTTTAGAGATGGACTGGAAAGGTCATGGGGGATTACTAAGAGACACTGCAGTCCACCAAAACTGATCAATGTTGCATAAGCGAGAAGATAATTTGAATGTTGCAGTTGagttttcttttacagtaaTCTTCCACCTAATTCTCAATAGCAGGCCTGCAAAGAACAGATTCTATTGTTATGTAGTAAAGTTACTGGTTAAAATTGAGGCTGGACATTAGATTGCGTTATAATTTCAGTGATTCTCATGCATTCGGTCGGATCACTGTCACAGAGGACTCTCCTCTCATGCTAAGCCTCATTCTGGTAATCTCGGTCTTAAATCCCACAACCCCCTGGTTGTGTAATGCTTAATCATAAAACAACTAAATCCTCACTTTGGGCTTATAAATGGCCAAGTAGAAATGAACTGAGAAGTCAGACGAGACAGCATTATGCAGAATCTGACCTCAGGATAACTtccaaaattcagctttgccataaattacatttaaaaattttgaaaCTGTAATACTACACAATATTCacgttttactttgttttgcgCCGAaaaaggttattattattattattattttcggAAAGATAAATGATGGGTAATTTTCActaatttaatccaaaaatgttgtAGCACTGGATATTGTGAAAACTGCACATTCATTCAAATCTAAATTTACATAGTCACTGTCTAGAGAATGAGAATGAAAATGCTGTATATAATCTGGTCTTGCCTTAACCACGCATTTGTACaactttgttattattatatcattgaCTTTGTAAATTCTCACTCTAGCTCATCTGAAAGAAACTTTAGGAGGTCGTTCATCAATTCATGCAATTCTACACCGTTACTTAGCAACAGACAAGTCACTTAAGCTGGACTACACGTCCGAAAACCACTCGAGAgaagtggagagagagaaacagggtGTAAACAAAGTGAAAATAAGGACAAGTTTCTCACTGTAGCATAACAAATGGCTTTTTCATGGCTATAGCTTATAGTTATAGTTTGAAACATGAATCATCTCACAGACCATCATCTTGATATGAATTTGTTACTGTTGTCTGGTTTAGTAGCACTCTTACGTGTTATATGTTTGATGTGGTGGATCTCCACAATCTTCCTTTTACTGCAGTCTGGACGTACATATGTTGTGCATAATCAGTTTTGTACAGCCCTTTAAATGAAGTCTGTGAAGCAAACTAATTCAGAACAGactgtgtgattgtgtgtgcaATGTAACTGTAACTTATTAATAGTTGATTATTGCTGGTTCTGTTTTGTTCTTTAGTTTCAGACAATctattttatattgaatattgtttattgattattttcCCTTGTCTCTGACGTCATGTGTCACTCTTAAATTAACTAAAACCTGGATTTGGTCAATAAA

Function

symbol description
rnd1a Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in nervous system; optic vesicle; otic vesicle; and polster. Orthologous to human RND1 (Rho family GTPase 1).

NR:

description
PREDICTED: rho-related GTP-binding protein Rho6-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07531 RND1; Rho family GTPase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225380.1 True 3115 mRNA 0.41 5 11041080 11049656

Neighbor

gene id symbol gene type direction distance location
slc17a9b slc17a9b,slc17a9,LOC107563661,LOC107560897,LOC106600547 coding upstream 92180 10939395 ~ 10948900 (+)
gid8b gid8b,gid8,LOC107560896,LOC108266002,LOC101169608,LOC108276161,LOC108231957,LOC106566597 coding upstream 102507 10934963 ~ 10938573 (+)
trnae-cuc_40 NA coding upstream 138940 10902069 ~ 10902140 (+)
ptk6b LOC107719912,LOC107672013,LOC107747980,LOC107657056 coding upstream 148535 10884466 ~ 10892545 (+)
srms zgc:194282,srms,LOC107672012,LOC107560891,LOC107657057,LOC107747981,LOC108435233,LOC108276248,LOC107563676 coding upstream 156777 10874824 ~ 10884303 (+)
prim1 prim1,LOC107741309,LOC107671973 coding downstream 8503 11058159 ~ 11062247 (+)
naca naca,LOC107737655,LOC107671995,LOC107657042,LOC107563656 coding downstream 18830 11068486 ~ 11075931 (+)
LOC122329336 NA coding downstream 25435 11075091 ~ 11075166 (+)
LOC122329335 NA coding downstream 26006 11075662 ~ 11075737 (+)
nfascb nfascb,LOC107672057,LOC107737654,LOC107741310,LOC107657041,LOC107560902 coding downstream 36210 11085866 ~ 11098542 (+)
G156551 NA non-coding upstream 5585 11033791 ~ 11035495 (+)
G156496 NA non-coding upstream 139257 10829167 ~ 10901823 (+)
G156432 NA non-coding upstream 312850 10727933 ~ 10728230 (+)
G156431 NA non-coding upstream 313916 10726918 ~ 10727164 (+)
G156417 NA non-coding upstream 337987 10702729 ~ 10703093 (+)
G156572 NA non-coding downstream 74436 11124092 ~ 11126634 (+)
G156568 NA non-coding downstream 99207 11148863 ~ 11152047 (+)
G156590 NA non-coding downstream 161385 11211041 ~ 11243036 (+)
G156592 NA non-coding downstream 169379 11219035 ~ 11313603 (+)
G156599 NA non-coding downstream 195895 11245551 ~ 11311487 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 117092 10913904 ~ 10923988 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other upstream 340185 10698798 ~ 10700895 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 468834 10563344 ~ 10572246 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other upstream 486360 10551097 ~ 10554720 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other upstream 522329 10514979 ~ 10518751 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other downstream 27498 11077154 ~ 11085604 (+)
G156586 NA other downstream 124765 11174421 ~ 11177033 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other downstream 647758 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other downstream 681324 11730980 ~ 11732361 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 1196537 12246193 ~ 12251982 (+)

Expression


Co-expression Network