csrp1a (csrp1a,csrp1,LOC107697020,LOC107559179,LOC107673143,LOC107707378,LOC100304834)


Basic Information

Item Value
gene id csrp1a
gene name csrp1a,csrp1,LOC107697020,LOC107559179,LOC107673143,LOC107707378,LOC100304834
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3922484 ~ 3927906 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225391.1
TGAAGCGCTCAGCGTCGGTGAACAGGGTCATGTTCCTTTAACATCTCACCACATCTGACTCGCTTCCCTCAGCGCCCCACCCAGAGCTCCTGAGCTGAAGTTTGACACCGTTACCAGCCTGCTCTCATTCCCGCCGTCTGCTGGGCTTTGACTGACCGCTCCCGTCCGTGcccacacacagagacagagagagagagagatcagtgCAGcaTGCCTCTTGGGGGTGGAAACAAATGCGGCTGCTGCCAGAAAACGGTGTATTTTGCAGAGGAAGTGCAGTGTGAAGGGCGGAGCTTCCACAGATCCTGCTTCCTGTGCATGGTGTGCAGGAAAAATCTAGACAGCACTACTGTGGCCGTTCATGAGAACGAGATCTACTGTAAGGCCTGTTACGGCAAAAAGTACGGGCCCAAAGGCTACGGCTCCGGCGCCGGTGCAGGAACTCTGAGCATGGATAAAGGAGAGTCACTGGGAATCAAACATGTGGAGCCTCAAGAACACCGGCCAACCAATAACCCCAACACATCCAAGTTCGCTCAGAAGTTTGGCAGCTCTGATGTTTGTCCACGGTGTAGCAAGGCCGTCTACGCAGCTGAAAAAGTCATAGGGGCAGGAAATGCATGGCACAGGGGTTGTTTCCGATGTGCAAAGTGTGGCAAGGGACTGGAATCTACAACTTTAGCCGACAAGGATGGAGAAATCTTCTGCAAAGGTTGCTATGCTAAAAGCTTTGGACCAAAGGGCTTTGGATACGGTCAAGGCGCTGGAGCGCTGTCACACACCCAGTAGATCAGCGTGACAACTTACCCCACGTTCCTTCACTCGTAAGCAAGAAGGAAACCGGAGTCCAGAAGCTTCATGCCTAAACCTTAAACGCGACGCATTCCAGATCTCAACACATTCCACAAAGCATCATGTCGTTGTCTTAAACCCATAAACATCTCTTCTTAACTCTTGAACGGTGACAAATGCTTGGAAGAATGTCAAGCATGTAAACTAAACATGAGTTTAAGACTTAATCTGCTCACCTAAGATCGCTTGAGATGGCACAGGTTTCGTGGAACCTGAGCTGTGAGTGTTCCTCTGCTTAGACGCGCTGCCTGTTCTCAGATGGTTTGCCACATGCTTGTTTGAGCTTTAATCACTCTAAAGAATGTTTTCTTCAGCATGAATGACAAGTCACAAGCGCTCCCTGGATTAAGGTGCACTAAACTGATTTGACTATCAATGGAAAGACATCCCACATATGCCTTCTGCACGTACTGTACTTCAAGAATACGGTTAGaagtaaatgtacaaatatgCACGA

Function

symbol description
csrp1a Predicted to enable actinin binding activity. Predicted to be a structural constituent of muscle. Acts upstream of or within several processes, including JNK cascade; gastrulation; and neuron projection regeneration. Predicted to be active in Z disc and nucleus. Is expressed in several structures, including axial hypoblast; axis; brainstem; cardiovascular system; and mesoderm. Orthologous to human CSRP1 (cysteine and glycine rich protein 1).
csrp1 Enables RNA binding activity. Involved in platelet aggregation. Located in nucleus.

NR:

description
PREDICTED: cysteine and glycine-rich protein 2

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007254 JNK cascade biological_process
GO:0003007 heart morphogenesis biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09377 CSRP; cysteine and glycine-rich protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225391.1 True 1309 mRNA 0.49 6 3922484 3927906

Neighbor

gene id symbol gene type direction distance location
phlda3 phlda3,LOC107673137,LOC107598124,LOC107746504,LOC107697022,LOC107559178 coding downstream 2662 3917778 ~ 3919822 (-)
tnni1a tnni1a,LOC107598157,LOC107746527,LOC107673122,LOC107696961,LOC103149619 coding downstream 8993 3907262 ~ 3913491 (-)
tnnt2a tnnt2a,LOC107559170,LOC107696942 coding downstream 28808 3882020 ~ 3893676 (-)
LOC122329314 lgr6,LOC107746507,LOC107559174,LOC107697027,LOC107707372,LOC107673397 coding downstream 151621 3701606 ~ 3770863 (-)
etv7 LOC107559164,LOC107696965,LOC107746509,LOC107673543,LOC107707376,LOC107598153 coding downstream 234286 3682092 ~ 3688198 (-)
bmp7b bmp7b,bmp7,LOC107750885,LOC107565994,LOC107673428,LOC107696936 coding upstream 281408 4209314 ~ 4247138 (-)
mipb mipb,LOC107565996,LOC107705750 coding upstream 360364 4288270 ~ 4289469 (-)
LOC122328525 LOC107696959,LOC107601327,LOC107565993,LOC107673245,LOC101885864,LOC103025508,LOC107750891 coding upstream 364327 4292233 ~ 4298594 (-)
baz2a baz2a,LOC107697014,LOC107673266,LOC107705669,LOC107601319 coding upstream 375649 4303555 ~ 4327917 (-)
ptges3b ptges3b,LOC107750889,LOC107601352,LOC107673275,LOC107697015,LOC107705749 coding upstream 402809 4330715 ~ 4337025 (-)
G154724 NA non-coding downstream 54643 3867282 ~ 3867841 (-)
G154723 NA non-coding downstream 63814 3855066 ~ 3858670 (-)
G154720 NA non-coding downstream 84351 3837662 ~ 3838133 (-)
G154708 NA non-coding downstream 95294 3826827 ~ 3827190 (-)
G154703 NA non-coding downstream 115583 3806543 ~ 3806901 (-)
G154763 NA non-coding upstream 9445 3937351 ~ 3937638 (-)
G154764 NA non-coding upstream 10667 3938573 ~ 3939050 (-)
G154783 NA non-coding upstream 122384 4050290 ~ 4050580 (-)
G154789 NA non-coding upstream 135617 4063523 ~ 4064880 (-)
G154787 NA non-coding upstream 136059 4063965 ~ 4065529 (-)
lad1 LOC107746516,LOC107696941,LOC107559160 other downstream 16592 3894966 ~ 3905892 (-)
tspan2b tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202 other downstream 404342 3502265 ~ 3518142 (-)
LOC122328836 LOC107566068 other downstream 476520 3434124 ~ 3445964 (-)
G154446 NA other downstream 965212 2925048 ~ 2957272 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other upstream 246008 4173914 ~ 4194998 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other upstream 899572 4827478 ~ 4834520 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other upstream 1526511 5454417 ~ 5455047 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other upstream 1549935 5477841 ~ 5479822 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other upstream 1556306 5484212 ~ 5496474 (-)

Expression


Co-expression Network