sycp2 (LOC107696925)


Basic Information

Item Value
gene id sycp2
gene name LOC107696925
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5919773 ~ 5936063 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225392.1
ATGGCACCCGTGCAGGACCATCAGGTGGAGAAACTGGTGGATGAggcttttaaacacaataaCTTCCAGGACCTAGAAAAAGCCTTACTCAAAAATGAAGACAAGGGAGAAACCACCATAAAATGTTCCAGACAATTCATGACCAAGCTCGATAAGCTTTTCATCAGGGAAATGGATCTGGGAAACGTGGACAATGCTTGCCTGGTGCTCACCGTTTTACACAAATACGGCGAGATGCTGGTGTTTCCGGGAGGCAGAGGAATATCTGTGGCGGTTTCCCAGGGATTTGTTAAGAAGATGGTGCAGTGGTTCGAGAAGGCCAGGAAGCTGTGGGTGGAGGCAGGGTCGTCAAGAAATGAGACGATGATAAAGTTGGCCGAGGACTTCTTTGATGCGCTGATGGTTGTTCAGGAAAGTTGTAAAgaagGCACATACGAAGTTACCGAAGCTCTGCTTAGTCACATTGGCAGACTGGCCTCTGATGCGCAAATAAACATCATGATACAGAAAGAGGCAGCAAGGAAGCTCAATGCTATTCTGGAAAAGATTCCCATGgagctgaaaaagaaaaagaagatctTGTCAACTCAAGAGGCTTCATCTATGATgAACGCAGTGGCCATTCAAATCCTCAAAGGTGGAGATTATGATTTGCAGGTGTCTTTAATGGAGGCCCTCTGCAGAATGGCTTCACCCGCTCAGAGGACTCAACTGGCCGACTCCTGGTTCACAATGACCTTTGTCTCGTCTGCGTTCAAGAAAATCAAGGATTCTCAGTTTGAGACCGACTGTAGGAAGTTTCTAAATATGGTCAATGGCATGCAAGGAGATGGGAGAAGCGTGTACTCCTACCCTTGCCTGGAGGCATTTTTGGACAAACATGAGcTTCTGATGCCAGAGGACAAGAACCTGGAAGCTTTCTGGATTGACTTCAATCTAGGAAGTCAAAGCATCTCTTTTTACTTCTGTGCGGCTAATAAGGAGATATCTTTCTCCTTTCAGGATGGCCAGTGGAGCACTCTGTGTATAGTTGAAAATGAGGTCCAGAGTTACACAGTAGAAGAGGAGAGTGGCAGGAAGGTTCTTCACCTGGTTCTGACCGAGCCGGCCTGCTTCGACAACTTAGAGGGCTCCAGAGTCACCATCAAATTCAGCTCTTCTCTAGACATCCTGCGGGCCACAGAGAGCGTTTTTGGGCAGGCTAAGAACAGGACGTCTGTTAGGAAGTCCTCTGTTGTGAAAACACCTGTTCACGTCAACCTGAGTTCACAGGAAAGTTCACAGGTTTTTGTCCCTGAAAGTCAAGTGTCCCCTTTGCGTGCAGAGGGAAAAGGGTCATCATTAATCAAGCATGGCTTTTCCTGCCAGCCCCCCACACATCCAACACCAGACACAAACAATGTGCCCCTCCAGATGGTAACTCCTATAAAAATGAAGGTGTCTGAGTCTTGTACGTACATTTCTGGCAGTGTGGGAAGTAAACAGGGGAGCTGTTCCTCCATCTCTGTGTTACCTTCAGTGTCAAAGCTAATGGTGAAACCAGCTCTTCAGATGACGAGCTCTTCAGAGAGGAAGAAGGAGATTGAACTTAGAGAACTCATGTTGTCTAAAACCTATTCAAGTGTGCCTTCACTTAGTTTTCAGTGCGAGAATAACCAAAAGAAGGCCCATGCAAATCAAGCGCAGttGGATGTCTATCCACTGATCAGTTCGCCTGCGGTCTGGAGCTTGAACTCTAGTAAAAGGAGAATCTCTGTATCCAGATCCCTGCTGGCTCTGCAAAAAGATCGCTCTGAAATGTCAGATGGTGGCTCTCATCCCCCTCCTCAGCGTCTGTCCCCGGCGCAGTGTGCATCCAGAGCCCTGACCCAGAAGCAGCTGCACACCCAGCTCACTCAGAGACTGGAGGAGGTGGTGAGGGAGCAGCAGGGTACAGATGGCCGTACAGCCCAGGCAGGCTCCTCGCTGGAGCACAGGACTGCAGgtcaagagaaagaaaatatggAGAAGTCAGTGAAGTCCATGCCTGCTAGAGCTGCACAAAAGAGAAGGAAGAGTAGTGAGGGTCAGGGCTACACATCAGACCGTGACAATCTAGGGATGTTTAGTTTGAAAACATCTTTTATAATCACTCAATTCATTGTGTTTGATCTCCTCAGGGATGTTTATGCATTTACGGAAGACACTCCAAAAATTAGTGTGAGAAAGAAATCCTCTGATGCATCCAGAGTGGAAAGCAGTCCACTAAGTAAACCTCAGCCTCCCTCCAAGTCGGCTAAAAGACATCATCTTACAAAGGCGCCCAAGGCAAATGAGAAGAAAAAGCTGTTCAGTGATACGGACACAGACAACATGACGGAGATCAGCTGGTTAAACTCAGCCAACAGGAAACCCAAGCCCAAAGTGGCAGACTACAGCAGGCAGCCGGTTAAACCCATCTTTCCACCAGCTGACACTGCATttaaatcaCCATATACGCCTTTGCCTTCGCCAAAACCAGTGAAAGAACAAATCAAGCCAAAACGGAAGAGACAGAAGAAAATGGCTGAACACGAGGATAAAAGGCAGCCAAGCATCAATAATAAGAAAACCACAGGACGACCGCAAAGAGCTGCAGCCTTGACCAGAACCTACAGAGAGACGTCTGACTCAGACGACCAGTCCAGTCTGTCAGAGAGTGAAAAAGCACCAGCCCCTAAGAAAAAGGCTGTTTGGCGAGCAGCAACGCTCCATGAGACTGTCTCAGCCAAAGCCGCAGAACAGGGgggaataaaacagaaaacctCTGTAGACATAGCCAAACTACAAAATGAGAAGAACGCACAGAAAAAGGCAGATAAAGTCTTTGCAAAGAGTCTGGGAGGTCAGAGGAACGATAAAGGCAAGAAGATGTGTAGTCCAGAGCATCTTGCAGCGAAGAAGACGTCATCTGCTCAGGGGTCAGCCAGAAGGCAGAAGGAGTCTTGGGCAGCGAGATTATCTTCCACATTCGCCTCGCCTCCCTCCGTTGAGAAGATGAGATCGGGCGAAAAGCTAAAAACCAACGTGAGATCCGGCGCTACACCTCTCCGTTCTCTGTCCATCTCTCCAATCGAAGCCGACTCTTCTCCACTACAGCCTCTCAGTTCCCTCAAAGCCTCCTCTCTCTGTAAAACCCCAGGGAATAAAGCTGCTGTGAAACAGCCATCTCGCACCATAACACCTGTTTCCACAACCTCAAGAGGCTCTAAACGGATTCCACCTGCCGCACAGGTTGAGCCGAGTCCAGTCGACTCTCCAGACTTCCAGGAGGAGCAGAGAGGTGTCAAGAACAAAACCAGCCCAGCATCGTTTGAAAGGAGGTCCATCATTTCTGTGACAATGAGCCAATCTTCCCACGTATCTGTAAGCAACAAGTTAGAGAAAACACCAGCAAGCCAGAAAGGAAGTAAGGTTGAGGGACTAGAATTTAAGTCAGGTCCAACGGCCATCCTCAAGCATCTCACCCTGAGCCACTCCGCTAGTCTTTCAGAGAGAGATGAAAGTGAGGAGGACAAAGAGAATAAGGCTCCTTCTCCCTCTCAGCTAGCTCTGAAAATGAAGCCTAGAAAGCTGTTTGTGCCTACTAATAAATCCTTCACTCCTAATAAAGGCTCCAATGCTAAACCTCTGGTGAAGGATCAGAGCAGTtcagaggaagaagaggaggacaTAGTCACAGAGAAtgggagaagaaagagaagttACAGGGGAGGCCTGAATAAAAGGGCCAAGGAAACGACTATATCCAGTAATGAGAGACTTGAGAGAAGTGTTTCTGGGCACAAAATAAGGCTAAGAATATGTTtatTCTGCCGCTTCTGTGTAGATCTAAGTTCACTCACtgtaccagtgtgtgtgtgtgtgtgtgtgtgtgtgtttttgaaagtgCTGACGAACGATTCatgggtgtgtctgtgtgtgtgtgtgtgtcctccagTGGAGACACTGTCATCCTGCACAAGGTCCAGCTACAGACATGCCAGCGAGGAAGACACAAACCCGACCCAGCCTGCTCAGCAGGTGGGCTTTATCTGCCATCAGTTCAGCTCAGAGCTTAAGAGAAAGATCAAGAATCGCTGCAGGACAATGGATCTTTACACCAGGCAGACTTTGAAGACTTTAGGGCAGCACATGTCATCCGTCAGTGTCCAAGTGCACCAGTACAGTACTCAGAGGCTGGAGAAAGTCAAACAAGTCCTGTTGAGCGAAATAGCAAACCTGGAGCAAGATGACACTGTTTTGAGAAGCATGGAGGAGGAATTGACGACTTACTGGGGGAATCAGACCTTGGCCTTCCATGCTTACCAAGAGAAAGGAACCAAGAGATTACAGGAGCTGAAAAGCGCTTTTCAGACCGACGTGTGTGAAAGTCTAGAGTATGAGAAAGAGGTCTTCTCTGTGGAGATGTCTTTGATGAAGAAGAGCATGAAGTCAGTTCAGGAGCGTTTCTTCAAAGAAATACACGAGGAAGAGTTGACGAGTGTGAGAAGAGGTCTGCAATCATTGTTCTTCCCTGATGCATCGAGGTTCTGACCTGAGAGAAAAACATCTACTGTTCTGAAACCCGTTTGTAAGCTTAGAGATATTACTGttatgttcttttaaaatattattactcgAAAGGTTGAATATTTGCACTTTCTAGTCTCCTTGAAACAGTGGTTGCCTGTACATAGTTTTTACATATTTGCTTGtggtttttaatatgaataatgaatagTTGTTTAAAGCAAACAAGTAAATGTTGTAGGCAATATAAGAACAAACGCGTTTATTTCTAACATCGACTTTAGATGTATGTGCGCAGAAATTAA

Function

NR:

description
PREDICTED: synaptonemal complex protein 2-like

GO: NA

KEGG:

id description
K19529 SYCP2; synaptonemal complex protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225392.1 True 4835 mRNA 0.47 40 5919773 5936063

Neighbor

gene id symbol gene type direction distance location
pigt LOC107724198,LOC107551531,LOC107696980,LOC107705717,LOC107593938,LOC107663065 coding downstream 26050 5886612 ~ 5893723 (-)
haus8 haus8,LOC107551529,LOC107696953,LOC107663059,LOC107577736 coding downstream 42908 5872294 ~ 5876865 (-)
sac3d1 LOC107663057,LOC107593949,LOC107724183,LOC107696954,LOC107551515,LOC107705659,LOC107705658 coding downstream 47594 5869126 ~ 5872179 (-)
LOC122328332 mrgbp,LOC107705719,LOC107724191,LOC107696984,LOC107693561 coding downstream 54556 5859911 ~ 5865217 (-)
LOC122329222 eef1a2,LOC107724190,LOC107696983,LOC107551525,LOC107705720,LOC107693560,LOC108429306,LOC108276238 coding downstream 61026 5853109 ~ 5858747 (-)
ppp1r3da ppp1r3da,LOC107722761,LOC107696952,LOC107593910,LOC107551518,LOC107663071 coding upstream 1569 5937632 ~ 5939803 (-)
ttll9 ttll9 coding upstream 8618 5944681 ~ 5949953 (-)
edn3b LOC107551532,LOC107696951,LOC107705677,LOC107663060 coding upstream 21102 5957165 ~ 5966425 (-)
cntn3a.1 cntn3a.1,LOC107696975,LOC107663068,LOC107705712,LOC107551535,LOC108438208,LOC105900126 coding upstream 92841 6028904 ~ 6084299 (-)
chl1a chl1a,LOC107663069,LOC107569852,LOC107705711,LOC107681408 coding upstream 200498 6136561 ~ 6183159 (-)
G155254 NA non-coding downstream 610 5815311 ~ 5919163 (-)
LOC122329299 NA non-coding downstream 256817 5654018 ~ 5662956 (-)
G155238 NA non-coding downstream 372065 5525041 ~ 5547708 (-)
LOC122329300 NA non-coding downstream 488249 5430546 ~ 5431524 (-)
G155157 NA non-coding downstream 806809 5111844 ~ 5112964 (-)
G155308 NA non-coding upstream 255034 6191097 ~ 6191320 (-)
G155388 NA non-coding upstream 412944 6349007 ~ 6351825 (-)
G155413 NA non-coding upstream 548591 6484654 ~ 6484915 (-)
G155391 krt8,LOC107551542,LOC108411779,LOC107727027,LOC105023875,LOC107681390,LOC107568038,LOC107705700 non-coding upstream 549376 6485439 ~ 6499749 (-)
G155392 LOC107559866,LOC107705699,LOC107666380,LOC108429286 non-coding upstream 573652 6509715 ~ 6514093 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other downstream 423299 5484212 ~ 5496474 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other downstream 439951 5477841 ~ 5479822 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other downstream 464726 5454417 ~ 5455047 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other downstream 1085253 4827478 ~ 4834520 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other downstream 1724775 4173914 ~ 4194998 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other upstream 794788 6730851 ~ 6731886 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other upstream 830545 6766608 ~ 6823032 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other upstream 921944 6858007 ~ 6867300 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other upstream 1028679 6964742 ~ 6981961 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other upstream 1058104 6994167 ~ 7003523 (-)

Expression


Co-expression Network