rcc2 (rcc2,LOC107687402,LOC107703073,LOC107712686,LOC107737572)


Basic Information

Item Value
gene id rcc2
gene name rcc2,LOC107687402,LOC107703073,LOC107712686,LOC107737572
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12555411 ~ 12561675 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225402.1
TGATCGCGAGGCTGCGAGTCTTTTGTTCcgaatcaatcaaaaaaaaaacgaggaaGACGGACAGACATAAGTAGAGCATCTGAATCAGGAAATCTACTTATATAATAATCGCATCTTCCAGCGCAAGAGACCAAGCCACGGCCGCTTAACTCAACGCGGCTGCATTCCGTGACtttagatatttgtatttaaagtagATAGGGGAAAGTTTAACTCAGgaTTTTGAACTATGCCACGCAAGAAGGTGACAGACGTGTCTGGGAACGGTGGactgaagagaaaaagaggaggTGGAAAGAAAAAGGACAGGGAGTTTAGCAGCGACGATGAGTTTGATGACTTTGAACAGGAAAACACAAAGAAACCTGGGAAGCCTGCTGCTAAAGCCGGTCTGCAGCCGGTCACTGTGGCCGACGATGTGAAGGAGAAGATTaaacTTGAGGTTCCCAAAGTCAAAGGTCAGTTGCTCGTTTTTGGAGCCACCAACTGGGACCTGATTGGCAGAAAAGAAGTGCCAAAACAGCAAGctGCTTACAGGAACCTTGGGCAGAATCTGTGGGGCCCCCATCGCTATGGATGTCTTAATGATGTCCAGGTTAGCTGCGTGGTGTCTGGACCCTGTGCTGCCCACAGTCTCCTCATCACCACAGAGGGCAAACTCTGGAGCTGGGGTCGTAATGAAAAAGGGCAGCTGGGTCATGGAGACACTAAACGTTTGGAGGCCCCGAAGCTAGTTGAGGGCCTGGGGGAGGAAGTGATTGTAGCAGCTGCTTGTGGTAGAAACCACACCATGGCTTTAACAGAAAATGGTACCGTCTACTCCTTCGGAGAAAACAAACTGGGGCAGCTCGGTCAGGGCAATCAGACAGATGCTGTCCTCAGCCCAGCTACAATTCAGTACAACGGGCAGCCGATAGTCAAAGTGGCCTGTGGTGCAGAATTCAGTATGATTGTGGACTGCAAGGGGAACCTTTACTCTTTTGGTTGCCCAGAATACGGCCAACTAGGGCATAATTCAGACGGAAAGTTCATCGCTCGTGCCCAGCGGATCGAGTTTGACTGTGAGCTGATCCCTAGACGGGTGGCCATTTTTATTGAGAAGACCAAGGATGGCCAAGTGCTTCCTGTGCCCAATGTCGTGGCTCGGGATGTAGCATGTGGGGCCAATCACACACTGGTGCTAGATTCCCAAAAACGTGTGTTTTCATGGGGATTTGGGGGATATGGACGACTAGGCCATGCCGAGCAGAAAGACGAGATGGTCCCACGGTTAGTCAAGCTCTTTGACTTCCCTGGCCGTGGAGCAACTCAAATATACTGTGGCTATCAATGTTCCTTTGCTGTCAGTGAAACAGgTGGTCTGTTTTTCTGGGGAGTGACAAACACGTCCCGTGAGTCCACCATGTACCCCAAAGCTGTGCAGGATCTGTGTGGATGGAAGATTCGTAGTCTGGCCTGTGGGAAGAGCAGTATTATCATAGCAGCCGATGATAGCACCATTAGCTGGGGACCATCGCCCACATTTGGAGAGCTGggCTATGGTGACAACAAACCCAAGTCATCCACCACTGCTCAAGAGGTCAAGACTCTGGATGGGGTGTACTCAGAACAGGTGGTGATGGGCTATTCTCACTCCCTGATTATTGCTCGGCAAGACACAGATCAGGAGAAAGAAAAGCTGAAGAAGCTTCCCGAATACAACCCGCGCACACTCTGATTGGACACCATTTACATTTTCTccggggcttttttttttttttttttttaatggaatgcCTCCGCTCACTAGGTCACCTCGGTAATCACAGTTTGTTTGGGATGGGATTgtgtatttttccttttatttttggacATCATATAACATTTTCGAAAGACAAGCCACGTGTTGGATAAAAGTATGAAAGAAGTTGCATTAACTGATCTGTCTAGGCTTGGGCGTTTCAGAATGGTAATTGTGGCATCACATGcctgttttaatttcacaacaGAGCCAGCAACTACTCAGAGCACTCGGATTCCACTGGATCCATCCCCTTTACTTATACATTCCTAATGGAAGTATATcagattttgttgtttatttttccataacGATGACTGTGAGATCCATGTCTGCTCTCTTCCAAAAACTGGTGCTAAATCATTCAAATGCAGACTATCAATGGGCTAATGGTTAACTAAAagacaaactcactccattctTGTGCCTTTTTAAGTGAGATGATTCAGGCTGAGGAAGTTCAGTTAGTCCTGTGACAACTCAAGTGTTGTGGGACACTTCATCTTTTAAACATCACTTTCATTACTTCCAGCTCCATGTTATCATCGCCATACATAAGAACATAATTTTCCTCAAGACCACGTAGCTAATatgtaagctttttttttcctttttttctccctctcactCTTAAGACACAGACGCCTGTTGATCTGATCAGGGAAGTATTATCAACTCCTACAATGCAAATGAGACATCAGCTGTGAGATTTCTATTAAACTCATTCTccctttttttagaaatgtaaatcCTTAATGTTCATGCCCTTGCTAGAATTGTTACCTACAGAAATGCTGTTCTCATGTGTTGCTGTTagcatgtttttgaaataatggACTTGATGTTGAGAAGAGTAGGTTTGTCCCATCATCTGGGACCAATGTCTTTACAGAGCATCATTCCATGCAATATGTTGAATACTGTGCCATTTCTTTGTGTTCACCTGGGCTTAAACTGTGATCACATTTGTTATGCTTTATAATCTGTATGTAAGTCCCTACAAGAGTCATCCACAGTTTGTCGGCAAGCCACAAGCTGATGTTTTGTTCtataatttttaaacagtgtgcttacaaatgttaattttgtttagGCAGTATATGTCCAGAAAACTGGAATTCCATCTCCtattctgaaatgtttcttttttttttcttaatattaaataaaggtTCATGTAAGTTGGTA
>XM_043225403.1
GACAGACGCGTTGCTGCTGATTCTTTTGTTACGGCGCTGCTAGTGTGTTAGCATAGCACGAGACCTCCGCTTTCACAACGCTTCGCATTTATATCTACAGTTACAGGAAGAAACAAGACATTGGCATTAATAAGCACAGCgaTTTTGAACTATGCCACGCAAGAAGGTGACAGACGTGTCTGGGAACGGTGGactgaagagaaaaagaggaggTGGAAAGAAAAAGGACAGGGAGTTTAGCAGCGACGATGAGTTTGATGACTTTGAACAGGAAAACACAAAGAAACCTGGGAAGCCTGCTGCTAAAGCCGGTCTGCAGCCGGTCACTGTGGCCGACGATGTGAAGGAGAAGATTaaacTTGAGGTTCCCAAAGTCAAAGGTCAGTTGCTCGTTTTTGGAGCCACCAACTGGGACCTGATTGGCAGAAAAGAAGTGCCAAAACAGCAAGctGCTTACAGGAACCTTGGGCAGAATCTGTGGGGCCCCCATCGCTATGGATGTCTTAATGATGTCCAGGTTAGCTGCGTGGTGTCTGGACCCTGTGCTGCCCACAGTCTCCTCATCACCACAGAGGGCAAACTCTGGAGCTGGGGTCGTAATGAAAAAGGGCAGCTGGGTCATGGAGACACTAAACGTTTGGAGGCCCCGAAGCTAGTTGAGGGCCTGGGGGAGGAAGTGATTGTAGCAGCTGCTTGTGGTAGAAACCACACCATGGCTTTAACAGAAAATGGTACCGTCTACTCCTTCGGAGAAAACAAACTGGGGCAGCTCGGTCAGGGCAATCAGACAGATGCTGTCCTCAGCCCAGCTACAATTCAGTACAACGGGCAGCCGATAGTCAAAGTGGCCTGTGGTGCAGAATTCAGTATGATTGTGGACTGCAAGGGGAACCTTTACTCTTTTGGTTGCCCAGAATACGGCCAACTAGGGCATAATTCAGACGGAAAGTTCATCGCTCGTGCCCAGCGGATCGAGTTTGACTGTGAGCTGATCCCTAGACGGGTGGCCATTTTTATTGAGAAGACCAAGGATGGCCAAGTGCTTCCTGTGCCCAATGTCGTGGCTCGGGATGTAGCATGTGGGGCCAATCACACACTGGTGCTAGATTCCCAAAAACGTGTGTTTTCATGGGGATTTGGGGGATATGGACGACTAGGCCATGCCGAGCAGAAAGACGAGATGGTCCCACGGTTAGTCAAGCTCTTTGACTTCCCTGGCCGTGGAGCAACTCAAATATACTGTGGCTATCAATGTTCCTTTGCTGTCAGTGAAACAGgTGGTCTGTTTTTCTGGGGAGTGACAAACACGTCCCGTGAGTCCACCATGTACCCCAAAGCTGTGCAGGATCTGTGTGGATGGAAGATTCGTAGTCTGGCCTGTGGGAAGAGCAGTATTATCATAGCAGCCGATGATAGCACCATTAGCTGGGGACCATCGCCCACATTTGGAGAGCTGggCTATGGTGACAACAAACCCAAGTCATCCACCACTGCTCAAGAGGTCAAGACTCTGGATGGGGTGTACTCAGAACAGGTGGTGATGGGCTATTCTCACTCCCTGATTATTGCTCGGCAAGACACAGATCAGGAGAAAGAAAAGCTGAAGAAGCTTCCCGAATACAACCCGCGCACACTCTGATTGGACACCATTTACATTTTCTccggggcttttttttttttttttttttaatggaatgcCTCCGCTCACTAGGTCACCTCGGTAATCACAGTTTGTTTGGGATGGGATTgtgtatttttccttttatttttggacATCATATAACATTTTCGAAAGACAAGCCACGTGTTGGATAAAAGTATGAAAGAAGTTGCATTAACTGATCTGTCTAGGCTTGGGCGTTTCAGAATGGTAATTGTGGCATCACATGcctgttttaatttcacaacaGAGCCAGCAACTACTCAGAGCACTCGGATTCCACTGGATCCATCCCCTTTACTTATACATTCCTAATGGAAGTATATcagattttgttgtttatttttccataacGATGACTGTGAGATCCATGTCTGCTCTCTTCCAAAAACTGGTGCTAAATCATTCAAATGCAGACTATCAATGGGCTAATGGTTAACTAAAagacaaactcactccattctTGTGCCTTTTTAAGTGAGATGATTCAGGCTGAGGAAGTTCAGTTAGTCCTGTGACAACTCAAGTGTTGTGGGACACTTCATCTTTTAAACATCACTTTCATTACTTCCAGCTCCATGTTATCATCGCCATACATAAGAACATAATTTTCCTCAAGACCACGTAGCTAATatgtaagctttttttttcctttttttctccctctcactCTTAAGACACAGACGCCTGTTGATCTGATCAGGGAAGTATTATCAACTCCTACAATGCAAATGAGACATCAGCTGTGAGATTTCTATTAAACTCATTCTccctttttttagaaatgtaaatcCTTAATGTTCATGCCCTTGCTAGAATTGTTACCTACAGAAATGCTGTTCTCATGTGTTGCTGTTagcatgtttttgaaataatggACTTGATGTTGAGAAGAGTAGGTTTGTCCCATCATCTGGGACCAATGTCTTTACAGAGCATCATTCCATGCAATATGTTGAATACTGTGCCATTTCTTTGTGTTCACCTGGGCTTAAACTGTGATCACATTTGTTATGCTTTATAATCTGTATGTAAGTCCCTACAAGAGTCATCCACAGTTTGTCGGCAAGCCACAAGCTGATGTTTTGTTCtataatttttaaacagtgtgcttacaaatgttaattttgtttagGCAGTATATGTCCAGAAAACTGGAATTCCATCTCCtattctgaaatgtttcttttttttttcttaatattaaataaaggtTCATGTAAGTTGGTA

Function

symbol description
rcc2 Involved in neural crest cell migration. Predicted to be located in several cellular components, including chromosome, centromeric region; midbody; and spindle. Orthologous to human RCC2 (regulator of chromosome condensation 2).

NR:

description
PREDICTED: protein RCC2

GO:

id name namespace
GO:0005730 nucleolus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225402.1 True 2968 mRNA 0.44 13 12555411 12561675
XM_043225403.1 False 2890 mRNA 0.45 13 12555411 12561173

Neighbor

gene id symbol gene type direction distance location
rnf207b rnf207b,LOC107591112,LOC107712689,LOC107593377,LOC107737674 coding downstream 1681 12546071 ~ 12553730 (-)
LOC122328351 LOC107737705,LOC107712654,LOC107703076,LOC107712673,LOC107593382,LOC107593415,LOC107687469 coding downstream 23850 12521821 ~ 12531561 (-)
her12 LOC107703051,LOC107591151,LOC107737706,LOC107593438,LOC107687468,LOC107712674 coding downstream 36218 12516922 ~ 12519193 (-)
megf6a megf6a,LOC107687467,LOC107593418,LOC107712656,LOC107671929 coding downstream 115151 12384843 ~ 12440260 (-)
znf362b znf362b,LOC107593390,LOC107737708,LOC107565834,LOC107699608,LOC107712695,LOC107671956,LOC108434701 coding downstream 343307 12204333 ~ 12212104 (-)
vps13d vps13d,LOC107703069,LOC107687459,LOC107712684 coding upstream 60395 12622070 ~ 12661132 (-)
lrrc38a LOC107703049,LOC107737569,LOC107591108,LOC107712669,LOC107687405 coding upstream 103326 12665001 ~ 12673819 (-)
ephb2a LOC107703068,LOC107593373,LOC107687404 coding upstream 113144 12674819 ~ 12725051 (-)
phc2a LOC107737567,LOC107591107,LOC107703065,LOC107717766,LOC107593370 coding upstream 210115 12771790 ~ 12810569 (-)
LOC122328520 LOC107591107,LOC107703065,LOC107737567,LOC107717766,LOC107593370 coding upstream 349395 12911070 ~ 12930813 (-)
G157224 NA non-coding downstream 21432 12533758 ~ 12533979 (-)
G157222 NA non-coding downstream 25918 12524479 ~ 12529493 (-)
G157106 NA non-coding downstream 302475 12252731 ~ 12252936 (-)
G157104 LOC107737579,LOC107565833,LOC107672049,LOC107712694,LOC107593419,LOC107687392 non-coding downstream 303430 12246217 ~ 12251981 (-)
G157102 NA non-coding downstream 311730 12243091 ~ 12243681 (-)
G157255 NA non-coding upstream 57344 12619019 ~ 12620057 (-)
G157295 NA non-coding upstream 291564 12853239 ~ 12853501 (-)
G157298 NA non-coding upstream 292622 12854297 ~ 12855852 (-)
G157349 NA non-coding upstream 468191 13029866 ~ 13040397 (-)
G157353 NA non-coding upstream 501979 13063654 ~ 13063904 (-)
G156985 NA other downstream 630761 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 697443 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other downstream 753779 11799922 ~ 11801632 (-)
LOC122328546 rpl10 other downstream 808791 11741400 ~ 11746620 (-)
G157367 NA other upstream 579403 13141078 ~ 13217408 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other upstream 718581 13280256 ~ 13282327 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 1661134 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 1765291 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 2008672 14570347 ~ 14589622 (-)

Expression


Co-expression Network