icmt (icmt,LOC107703075,LOC107591113,LOC107593379,LOC107687399)


Basic Information

Item Value
gene id icmt
gene name icmt,LOC107703075,LOC107591113,LOC107593379,LOC107687399
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12542311 ~ 12545517 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225404.1
GAGATTTCTGCGCGAGATCTTGCTGTTTTCAACATGGCAGGCAGCAAGTTGGTGCTAGAAGGAAGGATAAGTATTATTAGCTTTATCTCAGGACTGGGCGTCATCGTAATACCTTTACTTGTCAAATTTGGCGCTCACATTGACTGGATATTCGATTACCTCACGGATGTGAACGGAAAAATAGCCATTGCGGCGTATATTACAGTTATCAATGGCTTCCTGCTAATCATATACAAGGGACCTTTATACAAGGTGGCTGTTCGAGCCTGCTTTCTTGGATTTGCCTTTGGATGTGGTctcattttaagtttttcagATACGACATGGACACACTTTGGCTGGTATATGTGTTCTCTGTCACTTTTTCATTACTCCGAGTACCTGGTAACTGCCATCATCAACCCACGCAGTCTTTCTCTAGACTCGTTCCTGCTCAACCATAGTGTTGAATACACAGTAGCAGCTGTTTCCTCCTGGATAGAGTTCACTGTGGAAAAGCTCCTTATTCCAGAGATGAAGCAGATGAACTGGCTCTGTCTGGTGGGTCTGTTAATGGTTCTCTGTGGGGAGAGTTTGCGCAAAGCTGCCATGTTGACAGCTGGATCCAACTTCAACCACATAGTGCAGAATGAGAAGGCCCAGAGCCACGTGCTGGTCACCACAGGGGTCTACGCTCTCTTCAGACATCCTTCCTATGTGGGCTGGTTTTATTGGAGCATTGGCACCCAGATAATGCTGTGCAACCCAATATGTCTACTGGGATACACAGTTGCCAGCTGGCGCTTCTTTCGAGAGCGTATTGAGGAAGAGGAGATCTCGCTCATCCATTTCTTTGGAGAGGACTACATCGAGTACAAGAAGAAGGTCTTCACTGGCTTGCCCTTCATCTCAGGGATCAGAGTTAACTCCTAAAGCCGTACTGCATTGAACGGAAGGAAATAGCCTGAAAGTGCACACCTGGACACCTCTGACTGGCACTCTGAGCGAGCTAGTTGCCTGGTGGCATCATGTCGCGCCCCCTGGGGACGGCACAGATATATGAGGTGGCAGCACAGTAAAACTGACCTGCTGATCTGCTCTGAGACACATTGGTCTGCTCTGAGCAGGGTGGAGCTTCCACCCTCAACACCATCAGAGATACTAGTACACAAACACTGCATTCGTCAGCATCTGTCTTGTCTCCTGCACTTCATCACATTTCTGTTCTTACATTCTGTCTTACTCCTACGCATATGTCACATATCCTCATATTTACAGTCTTTGCACCATGTAATTTCAtactttggtttctttttttcttttctttaaatccCCTGTTTTTGTGGTTAGAAACCTTAGAAGTGAGATTCAAGACAAGTTTGTTACTGCTAGCAAACGTCCAAAGTTTTTCAGTAGATTTTTAAATCTCTTGAGGTATTTTTATTCAGATAGGCTTTAAACTGGACCTAAGATACATGCCTATTTACTGCAGTGGCCATTTAGACATTGTACTTTTTGTGTCTTGGAAAGATCTTTTTCTTAAGGTCAGCCAGAGCTGATTCTCGggcatacacattttaaaacatatttctgaCAATCTGAATATCTGTGATTTGTCACTGCTGTTggacaattttaatattatgattagaaaaataaacacgTGATAAATTA

Function

symbol description
icmt Predicted to enable protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity. Predicted to be involved in C-terminal protein methylation. Predicted to act upstream of or within methylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in liver and yolk syncytial layer. Orthologous to human ICMT (isoprenylcysteine carboxyl methyltransferase).

NR:

description
PREDICTED: protein-S-isoprenylcysteine O-methyltransferase

GO:

id name namespace
GO:0006481 C-terminal protein methylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity molecular_function

KEGG:

id description
K00587 ICMT, STE14; protein-S-isoprenylcysteine O-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225404.1 True 1653 mRNA 0.44 5 12542311 12545517

Neighbor

gene id symbol gene type direction distance location
draxinb LOC107703074,LOC107591150,LOC107737703,LOC107712672,LOC107593437,LOC107687472 coding upstream 397 12536698 ~ 12541914 (+)
LOC122328350 LOC107712654,LOC107737705,LOC107703076,LOC107712673,LOC107593382,LOC107593415,LOC107687469 coding upstream 16401 12524471 ~ 12525910 (+)
LOC122329206 tas1r1,LOC107593439,LOC107712676,LOC107687455 coding upstream 27140 12510231 ~ 12515171 (+)
iffo2a LOC107737575,LOC107712691,LOC107703080,LOC107591153,LOC107593384,LOC107687398 coding upstream 33309 12491866 ~ 12509002 (+)
ubr4 ubr4,LOC107687395 coding upstream 51457 12450270 ~ 12490854 (+)
LOC122329204 rpl22,LOC102779685 coding downstream 8680 12554197 ~ 12555217 (+)
arhgef10lb arhgef10lb,LOC107703072,LOC107591110,LOC107712685,LOC107687400,LOC107737571 coding downstream 17850 12563367 ~ 12600467 (+)
igsf21b igsf21b,LOC107712688,LOC107737570,LOC107687403,LOC107593375,LOC107591133,LOC107703070 coding downstream 56617 12602134 ~ 12612361 (+)
dhrs3a dhrs3a,LOC107737702,LOC107591109,LOC107712670,LOC107703071,LOC107593436,LOC107687474 coding downstream 67812 12613329 ~ 12620069 (+)
lactbl1a LOC107737568,LOC107591149,LOC108434488 coding downstream 182399 12727916 ~ 12733746 (+)
G157084 NA non-coding upstream 155930 12353090 ~ 12386381 (+)
G157081 NA non-coding upstream 296210 12245874 ~ 12246101 (+)
G157079 NA non-coding upstream 300910 12239849 ~ 12241401 (+)
G156931 NA non-coding upstream 336916 12204256 ~ 12205395 (+)
G156933 NA non-coding upstream 367396 12174530 ~ 12174915 (+)
G157265 NA non-coding downstream 183527 12729044 ~ 12787715 (+)
G157294 NA non-coding downstream 307724 12853241 ~ 12853832 (+)
G157317 NA non-coding downstream 444284 12989801 ~ 13040412 (+)
G157326 NA non-coding downstream 560943 13106460 ~ 13106957 (+)
G157329 NA non-coding downstream 569441 13114958 ~ 13115174 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 290329 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 795741 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 809950 11730980 ~ 11732361 (+)
G156586 NA other upstream 1365278 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 1456707 11077154 ~ 11085604 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 1548561 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 1754184 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2058276 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 2064012 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 2135343 14680860 ~ 14686618 (+)

Expression


Co-expression Network