LOC122329211 (ccdc178,LOC107555255,LOC107667113,LOC107599731)


Basic Information

Item Value
gene id LOC122329211
gene name ccdc178,LOC107555255,LOC107667113,LOC107599731
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 8281226 ~ 8307764 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225408.1
ATGCCTGACATAAAGTTACTCAAGCCTCCTTCAAGTGAAGGAGCGTTCTACAAGGGTGAGACGGTTAGCTCCAGCAGGCGTCGCAGCTGTGCTCTGGTTAACACTCCAGCACCGTGTGTGAACAAAGCAGTGTCTCACATCCAGGAACTGAAGTCCAAACTGGAAAACTGGGGCCAACAGGGTGATAATGCTCAGCATGAAACTGCACATGAAAACAACCACAGTATCATTTGGAAatgTGAAGCTAAAAATGCAGAGCTGTGTATTGAAGGCATGGGGCTTTATGCACGAGACAGTGGAGTGTGGAAGGAGACCACAGAAGTCTTGATGGAGGTGATGGGTTTGATCGAAAGGCGTCTTGAGCTGGCGAGAGATGCAGAGAAGGCTCTCcaggaagaaaaggaaaaagcaaAGAAACTCAGGAAACTTGACAGCCTCCGTCTCTGGAAGCAAAATGAGTTTCCTATAGCAATGCAGAAAGAGCGTGAAGACTCCAGCACAGACATCGCCGAGCTGACGTGGCAACTGAAAATGAGGAGAGATCAGCTGGCGCAGGTGAGAGACAGGCTGACCCGCGCGGAGGTGCTGAACCGGCGTCTGAAGGAGGATATCGATTTTATGAGGAAACACGGGCCGCTCGTTCACGAGAGGCTCCAGCTGGAGAGTGAAATCATGAAGCAGATCCGAACAGCACAAAGCGAGGTTAGTGAGACATTTTCAAACATCTCTCAGAAGCTAAAGGCTCTTCAGGAGGAGCTTAAAAATGAGGAATTCAGAGCAGACCTCAGAAAAGGAGAAATGAGCAAAGAAATGGAAACGATCAGAGATCATCTGAGTGACAAGCAGAGTGAGTTACAGCAGCTGCAGTCACAGTGTGAGGTGTTTCGAAGAAAAATTAAAGAGTCGATAGAAACACTAACACTGAGAGACGACCAAATCAAAGCCTTGGTGAAAAAGACGCATCAGTTTGAGAGGCACGAGACAGACGCAAACGAAGAAGTCAGAACactaaaagctgaaaaaaacgATAAAGAAGAGAAACTGAGGATAAAGAAGAGCGACGTGGTGCAGCTTCAAAACCAAATACAAACATCTAAACTTGAAGGTGATGGAAAGGTGTCTGTGTTGGATGCGAACTTAAGCCAGAAGCGAAATGACTTATCAACCCtccgagacaaaaacaaagagcGCAAACTGGAAAAAGACTACGAGAGAAAGATCTACCAAAGTGAGCAGGCTGTGAGAAAGCTACTGAAGGATCGTGAGCGTGTCCTGCTGAAGATCGGTTTGAGTGAAAAGCAGTGGAAAGCGGTCAAAACTGAATTTGACCAGGTCTCCGCCGTTCACTCAGACACCAAAGCCAAGCTGGACTGTTTAGAACGTCAGACCTTTCTGGAGGAGCTGAAGAACAGGaaagagacagacaaaaTGAAGGGCCTGATACTGACTGAAAAGACCACCTTAGACATTCTCAAAGGTAACAGGGACGCAGAAGCAGCCGAATATGACCGTGAACAAACAGACTGCGAGAAGGAGAAAGGTGAGCTGCAGAAAAAGTACGAAGACGCTTTGTCTACAGCCGCTCAACTGGAGACTGAGGTGGAACAACTTAGACAGATATATACAGAGAAAGCTGAGaCAACTGAAAACTTAAAAGCCAAACTAAGTGACACGCACACTGCACACAGAAGCCTCTCCGATGATtttgaggagaaaaagaaacgcTATCAAGAATGTTTTAATTCTgtgaagGAAAGCCTTAGTGTGACGGCACTGAAGTATGAGGAGATTTCAAACCGGATCAAGGAGCTTAATCTGAAGTCGAAAGAGTTAAAGCAAGAATCAGATGTGATGGAGCTAACCATCAGCACTATGCCTCATCTTATAGCAGAGCTACAGGGTTTGTCAGACACTATGGCATTCAAACATGGGACAGCCAAAGTAGTGATGGATAACGTGAACAGGGATATAGCTTCCTTGAAAGAGAGGAAGTCTCACCATGCACAGATTCACTCAGCGCTGTTCACTCAACGCCAGGCTATCATGAAGGACACAGAGGTTAATCTACGAGAAGCGCTAAAAGTCAATCTGGAGTTAGCGCAGGAGTATCACGAGCTGCAGAAAGCTCTGATGATTGCCAGACAAGAAGCCGTTTATGTTTCTGACCGAAGAAACCGAGCAGAGGCCTACATCCGAGATCACAAGCAGCTTTCTTTGTTGCAGAAGAGGATGCACAAAGCCATGCTAAAATACTTCAAACACCGCAGCGTCTACAGCCAGGCAGAGCTGGCCCGCTTCCAGACCCTCTCCAACCAGAACAACCAGAAAATGAAAGCCCTCCAGGAGGAGTTGTCAAACGCAATCCAGCGCCTCTCTGAGTTCCTGCTCTCGCTGACAGATGACTCAACTAGCAGCCATGTCCCGCAGCAAGCAAACAGACCCGTCGCAGATGCCGACGGATGGAGCAGGAAGACGCCTACAGTTCAGATAGCGGAGTAATTGGACGCTCACCTGCGCCAGACAACTTACTTAAACCCCCAGCATGCTTCACTCTCTCCCCTGTCCGACGCTCACGGCCCAATCCATAACAATGAAGCAGGTGACTTTCATGCTACTGTCAGGAATGATCTAATTTTAGCGGGGTGAATGATTGCAATTGGCTTTGCCTCATCAGATAATTAATCTATGTCACCATTAATTGGAAAAGAGAATAATTAGGGGGCTGTGTTGACAGAAATTCTACGCTTCTCTAGATTCTTGGATCTAATTACACCTACTTAAACCCCTCTGACCTTAACTAGCGGATAGTATACCTGCGTAACCCTAACCAGGCTGGGGTTGGTC

Function

symbol description
ccdc178 Located in ciliary basal body.

NR:

description
PREDICTED: coiled-coil domain-containing protein 178 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225408.1 True 2844 mRNA 0.47 23 8281226 8307764

Neighbor

gene id symbol gene type direction distance location
ntsr1 ntsr1,LOC107559468,LOC107747990,LOC107707740,LOC107671946,LOC107657007,LOC107603109 coding upstream 105707 8156193 ~ 8175519 (+)
slco4a1 slco4a1,LOC107603147,LOC107681874,LOC107559480,LOC107657069,LOC107707756 coding upstream 148275 8114941 ~ 8132951 (+)
plagl2 plagl2,LOC107690855,LOC107559482,LOC107707758,LOC107681868,LOC107747490,LOC107558237 coding upstream 361185 7884296 ~ 7920041 (+)
LOC122328711 LOC107707759,LOC107559486,LOC107747485,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 coding upstream 459433 7815091 ~ 7821793 (+)
LOC122328639 LOC107707759,LOC107559486,LOC107747485,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 coding upstream 507254 7766223 ~ 7773972 (+)
LOC122328648 abcd4,LOC107667197,LOC107677172 coding downstream 27190 8334954 ~ 8341779 (+)
LOC122329212 LOC107732057,LOC107718040,LOC107555247,LOC107677163,LOC107599733,LOC107667194 coding downstream 44036 8351800 ~ 8353910 (+)
pex14 pex14,LOC107681981,LOC107708844,LOC107716227,LOC107586529,LOC107695784 coding downstream 321440 8629204 ~ 8689833 (+)
tardbpa tardbpl,tardbp,LOC107570713,LOC107681961,LOC107695779,LOC107716231,LOC107586522,LOC107708842 coding downstream 611955 8919719 ~ 8924271 (+)
aurkaip1 LOC107695745,LOC107571831,LOC107708787,LOC107681958,LOC107578281,LOC107718821 coding downstream 837256 9145020 ~ 9147322 (+)
LOC122328539 NA non-coding upstream 204906 8054337 ~ 8076320 (+)
G155704 NA non-coding upstream 243963 8036903 ~ 8037263 (+)
G155701 gata5,LOC107681871,LOC107603108,LOC107559469,LOC107747495,LOC107707745 non-coding upstream 295640 7984095 ~ 7985586 (+)
G155660 NA non-coding upstream 341470 7938606 ~ 7939756 (+)
G155655 tm9sf4,LOC107681873 non-coding upstream 349170 7929733 ~ 7932056 (+)
G155756 LOC107563058 non-coding downstream 100402 8408166 ~ 8410045 (+)
G155813 NA non-coding downstream 305650 8613414 ~ 8617005 (+)
G155823 NA non-coding downstream 316366 8624130 ~ 8624789 (+)
G155824 NA non-coding downstream 317141 8624905 ~ 8625636 (+)
G155829 NA non-coding downstream 321029 8628793 ~ 8629065 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other upstream 975692 7298360 ~ 7305534 (+)
G155561 NA other upstream 1042307 7225994 ~ 7238919 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other upstream 1682694 6592602 ~ 6598532 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other upstream 3445742 4817365 ~ 4835484 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other upstream 4584204 3694652 ~ 3697022 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other downstream 13941 8321705 ~ 8333376 (+)
G155799 NA other downstream 180322 8488086 ~ 8488641 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other downstream 633267 8941031 ~ 9101372 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other downstream 813120 9120884 ~ 9122393 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other downstream 1375982 9683746 ~ 9769620 (+)

Expression


Co-expression Network