tnni1a (tnni1a,LOC107598157,LOC107746527,LOC107673122,LOC107696961,LOC103149619)


Basic Information

Item Value
gene id tnni1a
gene name tnni1a,LOC107598157,LOC107746527,LOC107673122,LOC107696961,LOC103149619
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3907262 ~ 3913491 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225417.1
GGAAATCCTTTAGAAAAGTGGCGTTAATCCCGAGAAAAGCTTTAACAACATTTGCTTTCGTGTTTTATAGCCAACACAACGACATGCCGTCATTAAGAACggcttaagtgtccaaatactttttggaGCCACCGTATATTGACCTTTGACAGCGTGGCAGCCGGACGGGCTCTGAGCAGATAAAGCGGAGCGGCGATGGCCCACTGACacacagcagacagacagacagatagcaAAGAGCCGCGGCGGAGCCACAGATGAAGCTCATGTGTGAGACACGGACagacaaggagagagagagagagagagagagagagagactgaaagaTTTGTGCTCTAATAATATCCTCCACTGACAGATTAGAGATACAGAGACGCTCTGGGTTAAATAAGGGAGCTCATCTCTGTTCTGATATCAATTATCAGTTTGAGGACAACACAAACACTGGAAGTCGCCAAGATGCCTGAGCAAGGGCAAGAGAGGAAGTCCAAGATCTCGGCCTCAAGAAAGCTCATGCTAAAGAGTCTGATGGTGGCCAGAGCCAAGGAGGAGCTGGATCAGGAGGTGCTAGATAAAGAGGAGGAGAAGCAGAGGTATCTGATTGAGAAAGTTCCTCCTCTGCAGACGCAGGGCATGTCCTTCGCTGAGCTTCAGGAACTCTGTCAAGAGCTCCATGCTAAGATTGATGTGGTGGATGAGGAGCGCTATGATATTGAAGCCAAAGTCTTACTGAATAAGCGTGAGGTCAAAGATTTGAACATTAAGGTTCTGGACCTGAGGGGGAAGTTCAAGCGGCCCACCCTGAGGAGGGTGAGGGTGTCAGCAGACGCCATCCTCCGATCTCTCCTAGGCTCAAAGCACAAAGTCTCCATGGACCTACGAGCCAACCTAAAATCGGTGAAGAAAGAGGATACTGAGAAGAAGAGGCCAGTTGAGGACAGCGACTGGAGGAAGAACGTGGAGGCCATGTCTGGTATGGAGGGAAGAAAGAAGATGTTTGATGCAGCAAAAGGCCCCACCCAGTGAAACCTTGTCTAATAAAGTTAACGCTCAAGTTATGCAATGCATTGTTTGACAACAAAACAGGATTAGGTTTAGAGTTACCTACAAAATATACCATTAAATACCACATACACTGTTATTTCAGGTGTCTTTGATACGATTGTAATTGTAATTCACTGCAGCTGCTCAGCTTTGGCGCAAATCGTTACGCAACTTTCCTGTGgccaaaaagtaaataattactaGCCTAGTTTATCTTTTATTGTGTCAATATTCAGTTATTGGTTATTAGTCAGTGGAAGGGCGTACCAGTGTATTATGAGAATAAACAAAGAGAAATCTTCGTTGATGTACAATTACATATGTTTAATCTTTCCGAAGGGTTCCCATGCTCCGTTTGGCGTGGTTTTCTGCGAATTGTTGTTTACGAAAGTGCATATTTCGGACTCCCTGTGCTGAAAGTGTAacataaaaagcacaaaaagccAATTCGGTATGCACGCGCTTGCGAAAAGGTGTATAATAACAGAGCCGGAATAGCGTGATAACGTCTTTGTGCATGCTGTAATACAGTAAAGCGGCTAAAGAATTCA

Function

symbol description
tnni1a Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex. Orthologous to human TNNI1 (troponin I1, slow skeletal type).

NR:

description
PREDICTED: troponin I, slow skeletal muscle

GO:

id name namespace
GO:0005861 troponin complex cellular_component

KEGG:

id description
K10371 TNNI1; troponin I, slow skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225417.1 True 1596 mRNA 0.45 8 3907262 3913491

Neighbor

gene id symbol gene type direction distance location
tnnt2a tnnt2a,LOC107559170,LOC107696942 coding downstream 13586 3882020 ~ 3893676 (-)
LOC122329314 lgr6,LOC107746507,LOC107559174,LOC107697027,LOC107707372,LOC107673397 coding downstream 136399 3701606 ~ 3770863 (-)
etv7 LOC107559164,LOC107696965,LOC107746509,LOC107673543,LOC107707376,LOC107598153 coding downstream 219064 3682092 ~ 3688198 (-)
pnpla1 LOC107696946,LOC107559157,LOC107746525 coding downstream 225303 3674465 ~ 3681959 (-)
ngfa ngfa,LOC107709229,LOC107554210,LOC107673522,LOC107566067,LOC107696968,LOC107735269 coding downstream 352749 3529533 ~ 3554513 (-)
phlda3 phlda3,LOC107673137,LOC107598124,LOC107746504,LOC107697022,LOC107559178 coding upstream 4287 3917778 ~ 3919822 (-)
csrp1a csrp1a,csrp1,LOC107697020,LOC107559179,LOC107673143,LOC107707378,LOC100304834 coding upstream 8993 3922484 ~ 3927906 (-)
bmp7b bmp7b,bmp7,LOC107750885,LOC107565994,LOC107673428,LOC107696936 coding upstream 295823 4209314 ~ 4247138 (-)
mipb mipb,LOC107565996,LOC107705750 coding upstream 374779 4288270 ~ 4289469 (-)
LOC122328525 LOC107696959,LOC107601327,LOC107565993,LOC107673245,LOC101885864,LOC103025508,LOC107750891 coding upstream 378742 4292233 ~ 4298594 (-)
G154724 NA non-coding downstream 39421 3867282 ~ 3867841 (-)
G154723 NA non-coding downstream 48592 3855066 ~ 3858670 (-)
G154720 NA non-coding downstream 69129 3837662 ~ 3838133 (-)
G154708 NA non-coding downstream 80072 3826827 ~ 3827190 (-)
G154703 NA non-coding downstream 100361 3806543 ~ 3806901 (-)
G154763 NA non-coding upstream 23860 3937351 ~ 3937638 (-)
G154764 NA non-coding upstream 25082 3938573 ~ 3939050 (-)
G154783 NA non-coding upstream 136799 4050290 ~ 4050580 (-)
G154789 NA non-coding upstream 150032 4063523 ~ 4064880 (-)
G154787 NA non-coding upstream 150474 4063965 ~ 4065529 (-)
lad1 LOC107746516,LOC107696941,LOC107559160 other downstream 1370 3894966 ~ 3905892 (-)
tspan2b tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202 other downstream 389120 3502265 ~ 3518142 (-)
LOC122328836 LOC107566068 other downstream 461298 3434124 ~ 3445964 (-)
G154446 NA other downstream 949990 2925048 ~ 2957272 (-)
G154445 NA other downstream 955634 2925305 ~ 2951628 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other upstream 260423 4173914 ~ 4194998 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other upstream 913987 4827478 ~ 4834520 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other upstream 1540926 5454417 ~ 5455047 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other upstream 1564350 5477841 ~ 5479822 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other upstream 1570721 5484212 ~ 5496474 (-)

Expression


Co-expression Network