nol9 (nol9,LOC107591073,LOC107737527,LOC107687449,LOC107716145,LOC107593915,LOC107673104)


Basic Information

Item Value
gene id nol9
gene name nol9,LOC107591073,LOC107737527,LOC107687449,LOC107716145,LOC107593915,LOC107673104
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14233101 ~ 14239250 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225464.1
GCTGGGAGTGAATTTCTTCAAATATGAACTGATGGAAGAGTTTAGCTCGTACGACCAAACTGCACGCAAATGCTTCACATCCATAACATTTGTAAAAGTTATGGTGAATTATTTTATAGCGAAGTGTTTTTTTCAGGATGGTAGTATAGGATCAATACTCTCTCGAACTCCGTAACATTCGTTATTGTCCATCACATGGCACAAACGCTAACTGTGTGCGCTCAGCGCTGCACAAAATAGCTTCTGTTAACCAGAGAGTGgtgatatttaatatgtttcacGCTTCATATTTGTCTGTGCTGTATTTATCCTTTCGAACGCATTCATCAAACAGTAACAGGGTGGTCTTAAAGCAGATCAAAAGGGGGAAATGAACCGCTTCGTCTCGATTATTGGAGTGGGACCACAACAGCATTGTGCAGCGTGATTTGATGCTCACGTGAAGCCACTGCCAGTTGCACAGAAACGACTGTGTATTCacataaactgtatttatacGTGCTCCACGTTTCTGATTTGATTCAAATCTGTTGTTATCGGTTACTCCGGCTTCCCACTTTAAACAGGTGTCTCCCTGCCCTGGATTTATGACGTTTTTAGTCTTGTTGGAGTTAATTGGATGACAATGAAAGTCCAAAAGGTTTCTTCTCGGTCGCAAAACTCCACAAAACGCCATGGCAAGAATAAATGGCGCAAAAAGATACACAGACTGGACTCCTCACTTCTAAACACAGTTCCTGGGACTGCAAAGTTGGAGCAACACCTAACCAAAAGGGAGAAACCTGCATTAAAACGGTTGAAGAGGTTGCACGCGAAGCCTATccctgaaaacagttgtgctgaggagagaaaggaaaagGCCAGTTCTGTGACTTTTGCTCATGTTCATACAAATGGAGGCACAGAACTGGATGACGGCAGCAGTTCAGTGGACTCTCAGGAGTGGAGCAAATATGCCAATAGTGTTCTTAAGAATGGCAAGGAGTGTTCAACCTCACCTAAAACAGACGAGGTGGAGAAGGACGATCTTCATATTCATGCCCACTTTGACCATACCCACACCCGTGCTGTTTTAGTCATGAAACAAGGCCAGGTTTTGTGTTTCCGTGGGAAGTGCCTGCTCACTTGCCTCTATGGTCACGTGGAGGTGCTGGGCTTCACCATTGAGGAGGGCCAACAGCCTTACCCCCTGTTTTCACCACCGTCTCACTGCCCTCTCACCATTACGGCCTTAGGAAACAACCACCCGTCCGGCAAGAACAAGAAAGAGGGACTGCTGGAAGCAAAAGCCATCGTTCGCAAATATTTCTCTTCAGAGCCAAGTAAAAAGCTGATGAGTGAGATGGACTCGGACTCCTGCGTGATGCTCCTGGAGCCTCTGGACACTCCGCTCACCCGCTTCCTCACCAGCTTCTCAAGCCTCTCGGAGATCTTTGGCCTCAACTCCAAGGAGCTGAAGTCTCGGGCTGCAGTTTATAACCCTGTTCTGTCAGCTGTGGGTGTAACAGCTCTGCGCGGACCTTGTGCACAGGGTCTAGTGATGTCACGTAGCTATAGACAAGCTATAAGCAGTCTGCTCGGTGCCTGGGCAGGGGAATTTGACCGCTGTCCCATAATTCTTGTGTGTGGGGGGAAGTCCGCTGGCAAATCCACCTTCAATCGACACCTTATTAACAGCCTGCTCAATCAcactgcaAACGTAGAGTATTTGGAGTGTGATCTAGGCCAGACTGAGTTCACCCCTCCTGGATGTCTTTCCTTGAACACAGTTACAGAACCACTGCTGGGGCCTCCTTTCACACACCTGCGTGAGCCCGAGCACATGGTGTTTTACGGTCAGGCAGATTGTCAGGCTGACATCGATCGCTATCTGGAGTCTCTCAAATCCCTCTGGCGCCATGTCAGTGGAGAAAGTCCTGTCATCATCAATACTATGGGCTGGATCAGAGGCCATGGCTTTCAGATACTGATCGATCTCATTCGCCTGTTTTCTGTTACACATGTGGTACAGCTCAGTTTTGGAAGTGCACCACAGTGTCAGCTTCTTACCCCAGACTTTCTCAAAACTGTTCATGGCTGGCAGACACATCCTCCAACGCCGCATACTTTGACAGAGGAGCCAGCCAGCCACCACTCCATTCAGTCTCATGTATTTCTTGGCATCCAATCAGAATTTGAAGGTGCTGGGATATGTGGAGTAATGCAACATCAGCGCAGTAATGAGCTGCGAGACCTGGCTCTGCTCAGCTACCTGAGTAAGCTGCAGTCCCCAGAGCCTGGACCCATCCGCCCGCTCCACTGCTTCACACCCTTCCAgGTCCCGCACTCAGCAGTGGCTATAGGTGTAACACACTGTGAGATTGCACCCAATAATATCCTCTACGCGCTCAATGCCAGTATAGTGGGATTATGCTGTCTCAGTGAAAAGGTTATGGGCAGAGGAGGTCCTGTTGTACTCTCCCAAACTCCAATTTGTCAGTGTGTGGGCCTAGGTGTTCTGAGAGGGGTAGACATGGCACGTGGTTTGTACTTTCTGGTTACTCCAGTGTCCCCCTCGGTCCTGAGGCACGTGAACTGTCTCCTGCTGGGAGAGATCACTCTCCCTAAATTGTTGCTCACCAACCAGCATGGAGTTGAAGGAGATTTACCTTATGTTACCACAGACTACAGTTTTGAAGTCCATGGGGCAGGAAAGCTTCACATCTACAAGGGATTGATAAGGCCTGGTTTTATAAAGTCAAATAACTAAGCTCTTCTGTATGGACTCTGCTTTCTGTGAACAACATTTGTATccttgtatttgttttataccCTAAATATTGAGGTAAAAATTGCCATTGAATGTACAAATCCACacaagtattgtttttttgatCTGTATACTGTGGGGAGATGGAGTGCATAGGATGTTTCTTTATCTCTTGTTGAATGGCTCCGTGTTTAAGATCCATGTGGGAAACTCGTCCTCATGTTTTGATTTGCTGTACTGTTACAGTTTGTCAACATATCATtaagaaaatgtcttttaccAAGTTACGTTCCCAAACTAAGATAATGCAgacaatgtaaaatattaaagtggGTTTCATTTTTGTCAAGA

Function

symbol description
nol9 Predicted to enable polynucleotide 5'-hydroxyl-kinase activity. Acts upstream of or within several processes, including cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); definitive hemopoiesis; and digestive system development. Predicted to be active in nucleus. Is expressed in hematopoietic system; liver; pancreas; and pharyngeal arch 3-7. Orthologous to human NOL9 (nucleolar protein 9).

NR:

description
polynucleotide 5'-hydroxyl-kinase NOL9-like

GO: NA

KEGG:

id description
K06947 GRC3, NOL9; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225464.1 True 3100 mRNA 0.47 13 14233101 14239250

Neighbor

gene id symbol gene type direction distance location
klhl21 klhl21,LOC107687446,LOC107593916,LOC107716146,LOC107591074,LOC107673096,LOC107737529 coding upstream 7700 14217507 ~ 14225401 (+)
olfml3a olfml3a,LOC107673069,LOC107737697,LOC107593917,LOC107687444,LOC107716140,LOC107591119 coding upstream 83892 14141884 ~ 14149209 (+)
nckap5l LOC107737531,LOC107673071,LOC107716135,LOC107591078,LOC107687440,LOC107593921 coding upstream 147931 14057970 ~ 14085170 (+)
LOC122329330 NA coding upstream 176280 14056685 ~ 14056821 (+)
kansl2 kansl2,LOC107687436,LOC107716132,LOC107737532,LOC107591080,LOC107673082,LOC107593923 coding upstream 176534 14050691 ~ 14056567 (+)
casp9 casp9,LOC107673102,LOC107737696,LOC107687452,LOC107716147,LOC107593914 coding downstream 1495 14240745 ~ 14245704 (+)
arhgap4a arhgap4a,LOC107737525,LOC107673101,LOC107591071,LOC107716143,LOC107687450,LOC107593913 coding downstream 7192 14246442 ~ 14257712 (+)
fam3a fam3a,LOC107673098,LOC107591069,LOC107737523,LOC107593911 coding downstream 54622 14293872 ~ 14298117 (+)
erbb3b LOC107673099,LOC107737518,LOC107668345,LOC107593907,LOC107716154 coding downstream 105946 14345196 ~ 14366196 (+)
pa2g4b pa2g4b,LOC107737517,LOC107593906,LOC107591063,LOC107668344,LOC107673109,LOC107716155 coding downstream 127308 14366558 ~ 14371893 (+)
G157531 NA non-coding upstream 36405 14196431 ~ 14196696 (+)
G157521 NA non-coding upstream 85485 14147410 ~ 14147616 (+)
G157494 NA non-coding upstream 144582 14087581 ~ 14088519 (+)
G157496 NA non-coding upstream 145843 14085594 ~ 14087258 (+)
G157481 NA non-coding upstream 192902 13981975 ~ 14040199 (+)
LOC122328961 NA non-coding downstream 25414 14264664 ~ 14273735 (+)
G157551 NA non-coding downstream 134327 14373577 ~ 14375050 (+)
G157608 NA non-coding downstream 325090 14564340 ~ 14566056 (+)
G157609 NA non-coding downstream 327269 14566519 ~ 14566730 (+)
G157610 NA non-coding downstream 327951 14567201 ~ 14568506 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other upstream 106900 14094078 ~ 14126201 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 1981119 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 2486531 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 2500740 11730980 ~ 11732361 (+)
G156586 NA other upstream 3056068 11174421 ~ 11177033 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 60451 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 364543 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 370279 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 441610 14680860 ~ 14686618 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other downstream 472897 14712147 ~ 14714555 (+)

Expression


Co-expression Network