casp9 (casp9,LOC107673102,LOC107737696,LOC107687452,LOC107716147,LOC107593914)


Basic Information

Item Value
gene id casp9
gene name casp9,LOC107673102,LOC107737696,LOC107687452,LOC107716147,LOC107593914
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 14240745 ~ 14245704 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225467.1
GCCCCGGGAGCGTGACGTCACCGCCAGCAAGACGTAAACAAGGAAGAGAAAAGAGCTCCGCTTGTGTTGATTAAAAGTCCGTTCATCTCAGTTCAAGCTTCGTTTTTCACGCGTTTGCCGTACATCACTTCAACGAGGATTTCGTCGCACTGAAAAGGTCTCATAGTCATAAACACTTTAAAGACCGAAATATTAAGTTGCAAGGATGGACCCCAAACACAGACATATACTTCAGCGGAACAGACTTAATCTGGTCACGGCGTTAAACCCAGCAGACGTCTGCGATGGGCTCTTGTCAAAGGGGGTCTTCACCCAGGACATGATCGATGAAATAAAGTGCAAGGGAGCAAGACGTGACCAAGCCAGGCAACTGCTGATAGACTTAGAGACGAGAGGGAGTCAGGCTTTCCCTGCCTTCCtggagtgtctgtgtgagtctgGCCAGCACGCCCTCACAGAGCTCCTTCAGTGTGGAGATGCTGCTCGTCTGCCTCCTTTTGTCCCTGTACGGCCTTCGCTGATCCCTCTGCCAGTCCAAAATCCAAAATATACAGACAAACCAGCTAGACCTGATTTTACTCAAGCACGGTTACAACCACTGAGACCAGATCGCCTACCTGTGCTCAATCCCCTTAGCCCACCTCCTGATACTCACGTGGTCACGAGACCAGCCAGACCAAGAAGAGACAGTATGCAGtGCTATAAAATGGATGCCAGTCCGTGTGGGATCTGCCTGATTATAAACAATGTATATTTCGACCCAGATTCGGATCTAAATGATCGTAAGGGTTCCGACATTGATTgcagaaagatggagaaaagATTTAAAGCTCTCAACTTTGAGGTTATTTCAAAAAGGAACTTGAAGTACAAACGCATTAGACACGAGATGGCATCTTTAGCAAAGAGGGATCATTCTGCGTTTGACTGCTGTGTGGTCATCATCCTTTCGCACGGCACTGagGCTAACCACAATCGTTTTCCCGGAGCGGTTCATGGAGTTGACGGACCAGCTGTCCCGGTTCAGATAATCACAAACTACCTCAACGGCCAGTGCTGTCCTTCTCTGCAGGGCAAGCCTAAACTGTTCTTCATCCAGGCCTGTGGAGGAGGTGAGAAGGACACAGGTTTTGAGGTTTCTCCAGATGAGGTGGAGCCTTCTTTGGGTGGGATAGATGACCAGATGGATGCTATTCCTATATCCTCCAGCAGTGACTCTCTCAGCACATCTGATGAACTTGATGCTCGGGCCACCTTGCCCACGCCCAGCGACATCCTGGTGTCCTACTCAACCTTTCCAGGCTATGTCTCCTGGAGGGACACGCAGGCCGGATCCTGGTATGTGGAGAATCTTGATCGTGTGCTCGAGGAGAATGCTGCCATGGATGATCTGGTGACCATGCTTATGATGGTAAATGATGCAGTCTCCCAGATATCTGCCAAAGGCCTGTATAAACAAATGCCCGGATATTTCAACTTCCTCCGAAAACATCTCTACTTTCAGTCTTCACAGTCATGATCGTTTgaacatttatgtgtgtgtgtgtgtgtgtttgcgtgcgcACACTACAGTGGGAACACTACCATGTACTTGatataatgtgatttaaaaaaaacatttgtaattttttacattgcaaGCTGAACCACGTGAACAGAACATTTGACtggaatttttgttttcaacatgattctatttttagaatttacatTTGCAAGCAGAAAGTTAACTTCACAAATATGAACCACTGAAACCTTGTTAACTGTGTAGGTGgaaattcattttgtttatgttttaaagtgcaCATCAGTGGGAGCACAATAGACTTTTAATGCAGTTGTGGTTTCGTTGTGGTATTTTACGCTGGTTAACGGTCACATTGTGTTCTTAAGAAACATCCACTTGTATACTGTGCATCCTTTCTACtgcataaaacatgcatttcagataaataaaaatctaaaacaaa

Function

symbol description
casp9 Predicted to enable cysteine-type endopeptidase activity involved in apoptotic signaling pathway and cysteine-type endopeptidase activity involved in execution phase of apoptosis. Acts upstream of or within several processes, including positive regulation of apoptotic process; regulation of collateral sprouting in absence of injury; and renal filtration. Predicted to be active in cytoplasm. Is expressed in gut; muscle cell; nervous system; and pharyngeal arch. Human ortholog(s) of this gene implicated in several diseases, including Parkinson's disease; colorectal cancer; lung non-small cell carcinoma; pancreatic cancer; and type 2 diabetes mellitus. Orthologous to human CASP9 (caspase 9).

NR:

description
caspase-9

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG:

id description
K04399 CASP9; caspase 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225467.1 True 1970 mRNA 0.46 10 14240745 14245704

Neighbor

gene id symbol gene type direction distance location
nol9 nol9,LOC107591073,LOC107737527,LOC107687449,LOC107716145,LOC107593915,LOC107673104 coding upstream 1495 14233101 ~ 14239250 (+)
klhl21 klhl21,LOC107687446,LOC107593916,LOC107716146,LOC107591074,LOC107673096,LOC107737529 coding upstream 15344 14217507 ~ 14225401 (+)
olfml3a olfml3a,LOC107673069,LOC107737697,LOC107593917,LOC107687444,LOC107716140,LOC107591119 coding upstream 91536 14141884 ~ 14149209 (+)
nckap5l LOC107737531,LOC107673071,LOC107716135,LOC107591078,LOC107687440,LOC107593921 coding upstream 155575 14057970 ~ 14085170 (+)
LOC122329330 NA coding upstream 183924 14056685 ~ 14056821 (+)
arhgap4a arhgap4a,LOC107737525,LOC107673101,LOC107591071,LOC107716143,LOC107687450,LOC107593913 coding downstream 738 14246442 ~ 14257712 (+)
fam3a fam3a,LOC107673098,LOC107591069,LOC107737523,LOC107593911 coding downstream 48168 14293872 ~ 14298117 (+)
erbb3b LOC107673099,LOC107737518,LOC107668345,LOC107593907,LOC107716154 coding downstream 99492 14345196 ~ 14366196 (+)
pa2g4b pa2g4b,LOC107737517,LOC107593906,LOC107591063,LOC107668344,LOC107673109,LOC107716155 coding downstream 120854 14366558 ~ 14371893 (+)
esyt1a esyt1a,LOC107737514,LOC107673110,LOC107591117,LOC107716156,LOC107593905,LOC107668346 coding downstream 129889 14375593 ~ 14390509 (+)
G157531 NA non-coding upstream 44049 14196431 ~ 14196696 (+)
G157521 NA non-coding upstream 93129 14147410 ~ 14147616 (+)
G157494 NA non-coding upstream 152226 14087581 ~ 14088519 (+)
G157496 NA non-coding upstream 153487 14085594 ~ 14087258 (+)
G157481 NA non-coding upstream 200546 13981975 ~ 14040199 (+)
LOC122328961 NA non-coding downstream 18960 14264664 ~ 14273735 (+)
G157551 NA non-coding downstream 127873 14373577 ~ 14375050 (+)
G157608 NA non-coding downstream 318636 14564340 ~ 14566056 (+)
G157609 NA non-coding downstream 320815 14566519 ~ 14566730 (+)
G157610 NA non-coding downstream 321497 14567201 ~ 14568506 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other upstream 114544 14094078 ~ 14126201 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 1988763 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 2494175 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 2508384 11730980 ~ 11732361 (+)
G156586 NA other upstream 3063712 11174421 ~ 11177033 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 53997 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 358089 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 363825 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 435156 14680860 ~ 14686618 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other downstream 466443 14712147 ~ 14714555 (+)

Expression


Co-expression Network