ddost (ddost,LOC107673085,LOC107687429)


Basic Information

Item Value
gene id ddost
gene name ddost,LOC107673085,LOC107687429
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13882388 ~ 13886080 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225468.1
CGTTAGCGCTGACGTTGTCCAAAGGAGGAAAATGGCGATAGGCTGCTTGTCAATGAGGGATACCGCGACTCCTGCAACATTAACTTGCAAAAGACGAGGCGCTACGATGGCCTCAGCGTCGTCTGGTGGGTTCGGCAGAGGCGCCCTGTTTGTTTTATCCGTGGCGTGTATGTTGCAGGCGGTTTTAGGAGACGGAAAGACTCTCGTTCTGCTGGACAATCCCAACATCAGAGACACTCATTCAATCTTCTTCCGCAGTTTAGCAGATCGTGGGTTTGACCTTACCTTCAAGACTGCTGATGATCCTGGGCTCTCATTGATCAAGTATGGACAGTTCCTTTATGACCATCTCATCATTTTCTCTCCATCAGTGGAAGATTTTGGGGGCAACATAAATGTGGAGACCATTACAGCCTTCATTGATGGTGGAGGAAACGTTCTCGTTGCTGCCAGCTCCGACATTGGTGATCCTCTGAGAGAGCTAGGCAGTGAATGTGGGATTGAATTTGATGAGGAGAAAACTGGTGTTATTGACCACCATAACTATGATGTTTCAGATCCTGGCGAGcacaCCCTGATTGTTGCAGACGCAGATAATCTTCTTAAAGCCCCAACTATAGTTGGCAAGCCCACTGATAAACCAGTCCTGTTCAAAGGTGTTGGCATGGTGGCTGATCCAGATAACTCTCTGGTGCTGGATATTCTGACAGGATCCTCCACCTCTTATTCCTACTTCCCCGATCGCCCCATCACGCagTATCCTCATGCAGTTGGAAAGAACACCCTCCTGATCGCTGGTCTGCAGGCAAGAAACAATGCACGCGTGGTTTTCAGCGGGTCACTGCACTTTTTCAGTGACGCTTTCTTCAACTCCCCTGTGCAGAAGGCTGCCCCTGGGTCGAAGAGGTACGAGCAGACTGGTAACCAGGAGCTGGCTGAGGCCCTGTCCCGCTGGGTGTTTAAAGAGGCTGGTGTTCTGAGGGTTGGGGCTGTTACCCATCATCCAGTTGGAGAGAGCACCCCCCCTGCTGCCTACACCATCACTGACCTTGTGGAATACAGCATCGTGATTGAGATGTTGTCTGGAGGAAAGTGGGTGCCTTTTGATGGAGATGACATTCAGCTGGAATTTGTCAGAATCGATCCATTTGTTAGAACCTACCTCAAGAAAAATGGTGGAAAATACAGTGTACAGTTCAAGCTTCCAGATGTGTATGGAGTTTTCCAGTTCAAAGTTGACTACAACAGACTTGGCTACACACACCTGTACTCTTCAACCCAGGTTTCTGTGCGCCCCTTGCAGCATACCCAGTACGAGCGCTTCATCCCCTCTGCCTTTCCATATTATGCCAGTGCCTTCTCTATGATGGCAGGACTCTTTGTTTTCAGCGTCGTCTTTCTGCatatgagagaaaaagagaagtcTGATTAAAATAAGACTCAGTGAAGAGGAgtgcaagaaaaaataaaagcaaaaatgtcttCAGACCTCTGGTAGTCATGATGAATAGAGATCTGAAATATGTTGGTTTGGGCTGGTTTTGGTGAGTTGTGCCAGTACAATTAAAAGCaacatttgtacatttgttttgaaaggGGGGTTGGGTGGTCTAACAAaagatatgtttttgtttactggtTTGCAATCTGGTAATTTATAGTGATTTAGGGCACacttcatgttttatttgtacaaaagGCAACTTGAATTGGTTTTATGATACAGCATGCACTGATGTTTTGGCTCTTGCTAtgaaatttttgttttgaaatctaCCATTTTGTAAAAAGAGGAATGGATTTTCAAAATGTGGTTGAAATACCTGAAGACAGTAAAGTTATGACATTCCAccacta

Function

symbol description
ddost Predicted to be involved in protein N-linked glycosylation via asparagine. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Is expressed in axis; notochord; and polster. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ir. Orthologous to human DDOST (dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit).

NR:

description
dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like

GO:

id name namespace
GO:0018279 protein N-linked glycosylation via asparagine biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG:

id description
K12670 WBP1; oligosaccharyltransferase complex subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225468.1 True 1857 mRNA 0.46 11 13882388 13886080

Neighbor

gene id symbol gene type direction distance location
plekhm2 plekhm2,LOC107737546,LOC107687427,LOC107716120,LOC107673107 coding downstream 670 13869388 ~ 13881718 (-)
ano11 ano11,ano7l1,LOC107737547,LOC107591089,LOC107716119,LOC107593934,LOC107687426,LOC107673051 coding downstream 13819 13852466 ~ 13868569 (-)
arhgef19 arhgef19,LOC107673086,LOC107737548,LOC107591090,LOC107687425,LOC107716118 coding downstream 31349 13835056 ~ 13851039 (-)
LOC122328742 rnf223,LOC107673070,LOC107716082,LOC107591144,LOC107593948,LOC107737699,LOC107687479 coding downstream 98646 13779025 ~ 13783742 (-)
her9 her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146,LOC107703052 coding downstream 386998 13493581 ~ 13495390 (-)
zbtb17 LOC107673084,LOC107737543,LOC107591087,LOC107687428,LOC107716122 coding upstream 1116 13887196 ~ 13897098 (-)
hspb7 hspb7,LOC107591086,LOC107578967,LOC107716085 coding upstream 11726 13897806 ~ 13901112 (-)
fam131c fam131c,LOC107737545,LOC107673113,LOC107577560,LOC107687483,LOC107716124,LOC107593947,LOC107591121 coding upstream 26475 13912555 ~ 13923481 (-)
epha2b epha2b,epha2,LOC107591085,LOC107737541,LOC107673100,LOC107687430,LOC107716125,LOC107593930 coding upstream 46908 13932988 ~ 13955555 (-)
spen spen,LOC107737540,LOC107591084,LOC107687431,LOC107716126,LOC107593929 coding upstream 82438 13968518 ~ 13999572 (-)
G157826 NA non-coding downstream 56799 13823993 ~ 13825589 (-)
G157813 NA non-coding downstream 109080 13772775 ~ 13773308 (-)
G157799 NA non-coding downstream 135217 13742257 ~ 13747171 (-)
G157765 NA non-coding downstream 446527 13433755 ~ 13435861 (-)
G157365 NA non-coding downstream 760362 13121813 ~ 13122026 (-)
G157863 NA non-coding upstream 171757 14057837 ~ 14075937 (-)
G157874 NA non-coding upstream 255859 14141939 ~ 14142168 (-)
G157875 LOC107673069,LOC107737697,LOC107593917,LOC107591119,LOC107716140,LOC107687444 non-coding upstream 257582 14143662 ~ 14143930 (-)
G157880 NA non-coding upstream 350272 14236352 ~ 14237014 (-)
G157885 NA non-coding upstream 356501 14242581 ~ 14243955 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other downstream 600061 13280256 ~ 13282327 (-)
G157367 NA other downstream 664980 13141078 ~ 13217408 (-)
G156985 NA other downstream 1957738 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 2024420 11763709 ~ 11857968 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 336729 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 440886 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 684267 14570347 ~ 14589622 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other upstream 798810 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other upstream 1161072 15047152 ~ 15048344 (-)

Expression


Co-expression Network