hsd17b10 (hsd17b10,LOC107562460,LOC107741341,LOC107560905,LOC107737644)


Basic Information

Item Value
gene id hsd17b10
gene name hsd17b10,LOC107562460,LOC107741341,LOC107560905,LOC107737644
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11238450 ~ 11241588 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225473.1
CAAATTAACTGCAAGCCAATCGGCTTGGAGGGCGTCATCGCGTGCGTATCTCTGATTGGCCAGCGGAGCGCCGATGCCCAAGCCGTTGCAGCGTGTGAACATGGCGAACATCAGAAGTGTCAAGGGGATGGTAGGTCTGGTGACCGGAGGGGCCTCTGGTTTGGGCAAAGCCACTGTGGAGCGGCTCATCAGTCAGGGGGCCAGCGCTGTGATCCTGGACCTGCCCAGCTCAGATGGACACAAGGTGGCTGCTGCTCTCGGAGACCGATGTGCATTTGCCCCTACTGATGTCACGTCGGAGGCAGATGTAAGATCGGCTGTGGATTTGGCCAAGGGGAAGTATGGTAAAGTGGACTTGGCGGTGAACTGTGCTGGGATAGCTGTGGCTTTGAAAACATACAACTTTTCGAAGAACATTCCTCACAGTCTGGAGGACTTCACTCGTGTTATCACTGTGAACATTGCTGGGACTTTTAATGTGATCAGATTGGCTGCCGGGGAGATGGGAAAGAACGAGCCTGATGCGGATGGACACAGAGGCTGTATCATCAACACAGCCAGCGTTGCTGCTTATGATGGACAGGTGGGTCAAGCTGCTTACTCTGCATCTAAAGGTGGGATTGTGGGTATGACGCTTCCTATTGCTCGAGACCTAGCACCAGTGGGAATCCGTGTGGTCACCATCGCCCCAGGTCTGTTCTCCACCCCACTTCTAGCAGGATTACCTGAGAAAGTGCGAAGCTTCCTTGCCAGACAGGTGCCCTTCCCGTCGCGTCTAGGAGATCCAGCTGAGTTTGCTCACCTCGTGACCGCAATAGCAGAAAACCCCATGATCAATGCTGAGGTGATTCGCTTGGACGGAGCCATCCGCATGCAACCCTGAGAGGAAAAAGGAAATGGGTGAAATATCCAAAACTGCTCTGTGACCTAAAACTGAAGACCTAACCGTActaagcttctttttttttttttagcagttgaGATACTTTGTATCTGAGTGGAAGTGCTACCACTCCTGTGAGTGGAAATCTTGTAGATTTTTCAACTCTTGAGTCACGTATTTATATACTGACTGCACTTCTGTGCCTGGGGAGGTACTAATGATTGATGTGTCTAcatagaaaatgcatttgtgcaaTCAAAGTTGCACAGGAGTCGTGCATGTCTCTGGTATCCACATATCCTTTTGTGTAAAATACTGGataattattgaaattaaaatattattcatacaaTTCAAATGAAA

Function

symbol description
hsd17b10 Predicted to enable oxidoreductase activity. Is expressed in central nervous system; endoderm; head; immature eye; and paraxial mesoderm. Human ortholog(s) of this gene implicated in chromosome Xp11.22 duplication syndrome; pheochromocytoma; and syndromic X-linked intellectual disability type 10. Orthologous to human HSD17B10 (hydroxysteroid 17-beta dehydrogenase 10).

NR:

description
3-hydroxyacyl-CoA dehydrogenase type-2

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008709 cholate 7-alpha-dehydrogenase activity molecular_function
GO:0018454 acetoacetyl-CoA reductase activity molecular_function
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function
GO:0047015 3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity molecular_function
GO:0047022 7-beta-hydroxysteroid dehydrogenase (NADP+) activity molecular_function
GO:0047035 testosterone dehydrogenase (NAD+) activity molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K08683 HSD17B10; 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225473.1 True 1246 mRNA 0.49 6 11238450 11241588

Neighbor

gene id symbol gene type direction distance location
tafa1a fam19a1a,fam19a1,LOC107657002,LOC107560881,LOC107563677,LOC107741340,LOC108436303,LOC108275576 coding downstream 25174 11175947 ~ 11213276 (-)
nucks1b LOC107563650,LOC107737648,LOC107741315,LOC107672021,LOC107560904,LOC107657038 coding downstream 84000 11148868 ~ 11154450 (-)
lemd1 LOC107741312,LOC107657040,LOC107737650,LOC107563651,LOC107672064 coding downstream 106930 11117682 ~ 11131520 (-)
pm20d1.1 pm20d1.1,LOC107737726,LOC107671971,LOC107656991,LOC107560862,LOC107672051 coding downstream 121022 11113009 ~ 11117428 (-)
pm20d1.2 pm20d1.2,LOC107672051,LOC107560903,LOC107737652,LOC107560862 coding downstream 126804 11106941 ~ 11111646 (-)
fam120c fam120c,LOC107741318,LOC107657034,LOC107672004,LOC107562475,LOC107560908 coding upstream 3940 11245528 ~ 11260187 (-)
sephs3 sps2,LOC107560911,LOC108275954 coding upstream 63691 11305279 ~ 11310902 (-)
ssr4 ssr4,LOC107671948,LOC107562474,LOC107737640,LOC107741342,LOC107657031,LOC107560913,LOC108436301 coding upstream 69973 11311561 ~ 11313590 (-)
ikbkg LOC107737639,LOC107672044,LOC107741321,LOC107657029 coding upstream 73117 11314705 ~ 11321862 (-)
zgc:158296 LOC107737724,LOC107671977,LOC107562459,LOC107657001,LOC107741322 coding upstream 81067 11322655 ~ 11324876 (-)
G156759 NA non-coding downstream 75431 11162664 ~ 11163019 (-)
G156726 LOC107737655 non-coding downstream 162489 11071410 ~ 11075961 (-)
LOC122329093 NA non-coding downstream 180455 11050293 ~ 11057995 (-)
G156719 rnd1a,LOC107560900,LOC107737660,LOC107657046,LOC107563659,LOC107741331,LOC107672025 non-coding downstream 185155 11047145 ~ 11053295 (-)
G156715 NA non-coding downstream 202955 11033742 ~ 11035495 (-)
G156762 NA non-coding upstream 1012 11242600 ~ 11244820 (-)
G156785 NA non-coding upstream 111571 11353159 ~ 11353828 (-)
LOC122328925 NA non-coding upstream 134589 11376177 ~ 11376688 (-)
G156812 NA non-coding upstream 298035 11539623 ~ 11540045 (-)
G156962 NA non-coding upstream 520852 11762440 ~ 11763023 (-)
G156746 NA other downstream 133227 11100744 ~ 11105223 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 560300 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 852483 10218473 ~ 10385967 (-)
LOC122328546 rpl10 other upstream 499812 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 503674 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 522121 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 558334 11799922 ~ 11801632 (-)
G156985 NA other upstream 681256 11922844 ~ 11924650 (-)

Expression


Co-expression Network