LOC122329270 (slc2a1a,LOC107703064,LOC107591105,LOC107593369,LOC107687407,LOC107737564,LOC107716100)


Basic Information

Item Value
gene id LOC122329270
gene name slc2a1a,LOC107703064,LOC107591105,LOC107593369,LOC107687407,LOC107737564,LOC107716100
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12944258 ~ 12953015 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225480.1
CAGTTCTCCGAGCACACCTGACAGACTCGAAGACGGTTTTAGATCGACTAAACCATGAGGGCTTCTTTCAACACGACAAACTGGAGAATACACTGtggattttaaattgtaataaactcCGTGATTTTTTGTTACGTGGACTTTAGGACTGCAGTTTTACACcggaagaaaataaatacatttaaaaaaaaaaaaaaactctaaactgCTACTATGGAGTCTAATAAAAAGCAGTTGACGCTTCAGCTGTTGATGGCTGTTGGGACTGCTGTGATCGGCTCCTTGCAGTTTGGCTACAACACTGGAGTCATCAATGCCCCTCAGAAGATCATTGAGTCTTTCTACAATGAGACATGGTATGAGAGGTACTCTGAGTACATCCCGCCAGGCTCTCTAACTGCACTCTGGTCCATATCAGTGGCCATTTTCTCTGTGGGTGGTATTTTCGGCTCCTTCTCGGTTGGACTCTTTGTAAACCGTTTTGGCAGGAGGAACTCAATGCTCATTGTTAATGTTCTGGCCTTCACCTCTGCTGCTTTAATGGGCTTTTCCAAGCTGGCTGAATCCTGGGAGATGCTTATTATCGGCCGCTTCATTATAGGCCTTTACTCTGGCCTGTCCACAGGCTTTGTACCAATGTATGTAGGAGAAATCGCCCCAACTTCTTTGCGTGGGGCACTGGGCACACTTCACCAGCTTGGCATTGTCGTTGGGATCCTCATAGCACAGATCTTTGGGATTAAAGAAATCATGGGGAACCCTACATTGTGGCCCTTCTTACTTGGGTTTACTTTCATCCCAGCCGTAATCCAGTGTGCCTTGCTGCCCTTCTGCCCCGAGAGCCCTCGCTACCTCCTCATTAACCAGAACGAGGAGGCTAAAGCCAAGAGTGTGCTGAAGAAGCTCCGTGGCACTGAAGACGTGGCTGCAGACATGCAGGAGATGAGGGACGAGAGCAGACAGATGATGAGGGAGAAGACAGTCACCATCCCTGAGCTCTTCCGCTCATCCCTCTACCGCCAGCCCATCTTCATTGCCATCATGCTACAGCTCTCCCAGCAGTTCTCCGGTATCAATGCTgtTTTTTATTACTCCACTGGTATATTTGAGAAAGCAGGGGTGTCTGAGCCTGTCTATGCCACCATTGGTGCTGGAGTTGTGAACACAGCATTCACAGTTGTATCGCTGTTCATAGTGGAGCGAGCCGGTCGAAGATCACTACATCTTGTTGGGCTGATGGGAATGGCTGTGTCTTCTGTTCTCATGACCATAGCTATGGCGCTACTAGATCAAGTTAAATGGATGTCATATGTCAGCATCGTCGCCATCTTCAGTTTTGTGGCATTTTTCGAGATCGGACCAGGTCCAATCCCGTGGTTCATTGTGGCTGAACTCTTCAGTCAAGGCCCCCGACCTTCTGCCATCGCCGTTGCTGGTTTCTCTAACTGGTTTGCCAACTTCTTGGTGGGAATGTGCTTCCAGTATGTTGAGGAACTGACAGGGCCGTACGTTTTCATCATCTTCACTGTCCTTCTTCTGATATTCTTCGTCTTCACCTACTTCAAAGTTCCTGAGACCAAAGGGCGGACATTTGAAGAGATCTCTGCGAGCTTCCGCTCAGGGTCAGAGAAGTATACCCGAGATGATCTGAACACATTGGGGGCAGATTCCCAGCTCTGAGCTCAGTGCCACGTTTATACAGTAATGTAGTGAGTGTCCTCGGCTATAGTACAGTGGGTATGTTCACAATGGCAAACTACCATATAACTCCTACTAGGAATGCTGTAGGTTATGCAGTGTTTACTATGCACTAGTGTTGTCACCATACTGGAATTTCCAAATTTGATAttcaatgacattttttttttttataccgcTGTGCAAAACCGGCGCAACGTTAAGATTTCTATTAGACTCGATTATTAAGAAGTACCTTTCATGCAGCTCtaattgaatgaaaacatcctgcaaaggtTTAAACTAAAAGTGGATCGCATATAAAATTATCGTCTCTCAAAAGATAGAGTGaacgaatcccaagccgtttcatgttgatgtcgaaataaacatttgcatgtttcCCGTCAACTTGTTGAGAAAACCACTCAGACCAATCTCAGAAGATTAGCGTCACGGAAAGGAGGGGTTTAGAAAGATTTAGCATTGAGAGAATCAGTAAGCAAGAAAGAGTTTCTGACCTTGCACGTCTGTCAATCTGTTAATTTATCTAAGCCATAATAAGGGCAccttaaaagataaaaatcacAAGGTTACAACTTTCCAATGAGGAATATTTTTATAACGTCTTGAGGTGGAaaaacactggagaaaaactTAACGACACTGGAGAAAAGCTTATGGATTTTCATGTTTACgtcaaatgctttttaaagagaagtgtcatttttattattttattacccAGAAGAGTGGTGTGACCATTATGGAGCATAATGAGCactataaacaacatttatcatttactaCAATTtagaataatgtaaaataatattttctgccTAGTTCTGTGATAAGAAGCCAAATCACAAAAGGATGTTTCAGATATTTCAGTATCGATATgtaacaaaaaactatttttgacaACACTAGTATGCAGATTTTCTGATTGCATTGAATACCTTTATGACTTATGACTACATTTGCCAAACTGTGCAATATTTGACCAGTACACTGCTTCTCAATAATTACTCATTATTTCACTGGACTTACAAAAGTGTGAATATTTGTATACAAAATTGTATTACACATTGCAaaattgctatatttatttctgaGGCCGTAACGGACACTTCTGTCTAACGTAAAATGTTACACTGTTAAGGCAGTGTACCGTACAACAGTTTAAAACTTTGTTTGCATACTGCAGACTGCTTTTAGGTGTACTACATACTGCgctattattttttgtacatactatattgaaacaataatatatagtatacgGTATGGTGTAGCATGCAGTatgcagtattttttgtaaTCCATTCTGAACGTTCCCACTGTCTTACTTTAGATACACTACAAACAAACTGCTTTTCTCCTCACACATACTGTTTTGTTAATCGTTTGTTTTCTCATCAATGGATCTAAAAATAAGATTATTGtacatttgtgtattattagGTCTTCTGAATGATTCAGTTCGCACAATTCAACctcaaataattgttttttagactagcacttttaacagttttaacattttttttgctattgtcCAGTCAACAAATGATGAGTTCTGATATAATATGTCTCCTGTTGTTATATCAAGTATAATGATGTCAGAAATGATTATGGTGTCAgattataatatatgtttatcaATACTTGAACTGTAGCTTTACCAAGGAGTGGAAGATCTttctcaaaattaattaataagaaGAATACAAGCTCAaatccattatttaaaattatacagcAGTCCTTCTGCTTTTCAGAAGTTTGAATTAGGGTCTCCAATACGGTGAGGTTTAATATCTTTCCAAACTGGACCAAGCTTATGACTTTCAGCAGATTAACACAactaatatgaataaaattcaattttagATTTGTGCataatgtttaatgtgtgtgtgatgatgaattTAGTATATTGTTCATTTTGCAAAAGTGCAATAATTGTTCACGTCCTGTTTATTTATTCCACATATTTCTAGGCATTATGAATGAAAAAGGCTTCTAATATTtcctatgtaaaaaaaaatgtatttttatgtataagtGTTTTCActtcactgtaaaaacaatttAGAACTCCCAATTTTTTTCTAGTGGGCCAATGGAAAAATTTAGATGCAACGGGTCACTAGAAAAATTTGATTTGCGGAGGTCTgaaattttttacagtgttggcATAGACTGAAATGGACGCATTCATCCAGAGGATGTAAATAAGTTCAGGTTTACtgaagcatattttttttactagatgTGCttagtattttgaattttttttttgaaaattttttttacttcctaCATGATGAGATATGGTTTTGTTCAGTATGTCTAGGAAAAATGTGCCAAGGGTGTATTACTTTTTctaaataatcaattaatagttgcaaataaatcaaataaacaaaactgcaACAGAG

Function

symbol description
slc2a1a Enables glucose transmembrane transporter activity. Acts upstream of or within several processes, including endothelial cell development; glucose import; and vasculature development. Predicted to be located in plasma membrane. Is expressed in several structures, including cranial vasculature; liver; nervous system; otic vesicle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in brain disease (multiple); carbohydrate metabolic disorder; myelomeningocele; obesity; and type 2 diabetes mellitus. Orthologous to human SLC2A1 (solute carrier family 2 member 1).

NR:

description
PREDICTED: solute carrier family 2, facilitated glucose transporter member 1-like

GO:

id name namespace
GO:0046323 glucose import biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0001885 endothelial cell development biological_process
GO:0061300 cerebellum vasculature development biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0055056 D-glucose transmembrane transporter activity molecular_function

KEGG:

id description
K07299 SLC2A1, GLUT1; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225480.1 True 4124 mRNA 0.39 10 12944258 12953015

Neighbor

gene id symbol gene type direction distance location
eif4g3b LOC107737566,LOC107703066 coding upstream 174328 12734988 ~ 12769930 (+)
lactbl1a LOC107737568,LOC107591149,LOC108434488 coding upstream 210512 12727916 ~ 12733746 (+)
dhrs3a dhrs3a,LOC107737702,LOC107591109,LOC107712670,LOC107703071,LOC107593436,LOC107687474 coding upstream 324189 12613329 ~ 12620069 (+)
igsf21b igsf21b,LOC107712688,LOC107737570,LOC107687403,LOC107593375,LOC107591133,LOC107703070 coding upstream 331897 12602134 ~ 12612361 (+)
arhgef10lb arhgef10lb,LOC107703072,LOC107591110,LOC107712685,LOC107687400,LOC107737571 coding upstream 343791 12563367 ~ 12600467 (+)
rap1gapa rap1gap,LOC107716101,LOC107737565,LOC108434374,LOC107703042,LOC108276112,LOC107593412,LOC107687462 coding downstream 9280 12962295 ~ 13037553 (+)
gpr157 gpr157,LOC107737701,LOC107703047,LOC107591148,LOC107687411,LOC107716105,LOC107593368 coding downstream 156039 13109054 ~ 13113029 (+)
LOC122329098 slc2a5 coding downstream 163978 13116993 ~ 13123560 (+)
eno1a eno1a,eno1,LOC107703060,LOC107591100,LOC107716106,LOC107737561,LOC107593367,LOC108434336,LOC103038459,LOC103151087 coding downstream 179002 13132017 ~ 13141968 (+)
rerea rerea,LOC107737560,LOC107703059,LOC107591099,LOC107593365,LOC107687412 coding downstream 194690 13147705 ~ 13284874 (+)
G157294 NA non-coding upstream 90426 12853241 ~ 12853832 (+)
G157265 NA non-coding upstream 156543 12729044 ~ 12787715 (+)
G157084 NA non-coding upstream 557877 12353090 ~ 12386381 (+)
G157081 NA non-coding upstream 698157 12245874 ~ 12246101 (+)
G157079 NA non-coding upstream 702857 12239849 ~ 12241401 (+)
G157317 NA non-coding downstream 36786 12989801 ~ 13040412 (+)
G157326 NA non-coding downstream 153445 13106460 ~ 13106957 (+)
G157329 NA non-coding downstream 161943 13114958 ~ 13115174 (+)
G157408 her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107703052 non-coding downstream 458655 13411670 ~ 13495376 (+)
G157410 LOC107737553,LOC107703053,LOC107591147,LOC107687419,LOC107716113 non-coding downstream 485260 13438275 ~ 13441951 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 692276 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 1197688 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 1211897 11730980 ~ 11732361 (+)
G156586 NA other upstream 1767225 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 1858654 11077154 ~ 11085604 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 1141063 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 1346686 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 1650778 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 1656514 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 1727845 14680860 ~ 14686618 (+)

Expression


Co-expression Network