rab5if (c23h20orf24,LOC107680731,LOC107713559,LOC107703615,LOC107557487,LOC107562621,LOC107747730,LOC103366025)


Basic Information

Item Value
gene id rab5if
gene name c23h20orf24,LOC107680731,LOC107713559,LOC107703615,LOC107557487,LOC107562621,LOC107747730,LOC103366025
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1936124 ~ 1939390 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225481.1
CACGCGCGGAGCCAGCTCCCTGAGCCGTGTCAATGTGGGGCGAGAAGCAGCGGGTCTGAGCGCCAGCGGAAGATTTTTAGAGTCCGGATCGAGTGTTCAGTCGTAGTATCGGGTGTTTTCTCCAGTCGGAGCACGATGACGAGCAGCGCGAAGCGGAAAGAGGAGGTCCACGCGGTGAACGGCGGAGTAAAGCCGTCCACATGGAGCAAAGCCATCAGCTGCAAAGCGGTGTGGGACGAGAAGGATGAGTTTTTAGACGTTGTTTACTGGTTCCGGCAGATCATCGCTGTGGTGTTGGGGGTAATATGGGGTGTCGCTCCTCTGAAAGGGTTTCTGGGAATAGCCATATTCTGTATCATCAACGCGGGCGTCCTGTATGTGTACTTCAGTAGTTACCAGCAGGTGGATGAAGAGGAGTACGGAGGAACATGGGAGCTCACCAAAGAAGGCTTCATGACTTCGTTCGCTTTGTTTCTGgtggtgTGGATCATCTTCTATACGGCGCTACACTACGACTGAGGACTGCAGGACACACAGAGACGGACGTTTATTTATTGTGATCTGGATGGAGCTGCTTTTCCCAGGCGTCTGCACATGTCTCCTTCAGCATGTGTGCGCCGGAGGAAGAGGTGCATCGTGGGTACAAGACGCGTCAATAACCTTCTGGAACCCGGGGCTCATCGAAATCTGAAGCTGATGTCCGGTGCACTGCCACGGCTGTTGGGTTAATAACTGTTATTTCTGTTCGTcctctctgcttttttttttttttttcttcttgtttgaCTGCCGCCGTATCGAGCAGGGTTTAACTCcgtttgatgtttttcttagtTCCTTTCACGATTAGCATTCAGCACAGATCGTCTTACTCTGTTATGACCAGTAAAATCAGATAGGGGTGTGTAAATTCTGTACAATTCATTTTATCGAATCCATGATGTATTAAAGTATTTCTCATGTCTCGTCCATGTAACAAACTGCTCAGTATTTTATAGTGTATTGATGGACGCGAATGGTCTGTATGCTTGTGACGATTAAGGAGAGACCGTGGAGAGACTTATTTTCTGGATCAAATGTTTTGGAGAATCAAATAAAGCTGGGCTTTGTCTGCCCTACACTTTTCAACGGACGCTCCGCTCAAGTTCTGGTGGACTTTGCAGCAAATCCAAGTCTCTTAATGACCGCGTTAAGAGAAGTTCTGGATTTCGGTTGACCTACGTGACATATAGGCGAACCCTAAAGGTTTTTGCAGGCAGAAAAGCCCTGTGTTGTTGTCATTGATAACGGGGTTCCCGCTGGTCCTTAAGAAGGCCAAAATTTAGttgctaaaaatatacatattctCAAATTTAGTCGGGGGAGAAGTTATATTTCTGCTGTGCTGAAAGCGCCACCTTCTGGCAGAgaattaatgtacatttacagtaaGCATAAATGATAAGAGATTGCTTTAcgaaagtgaaaaataaaataaaattacgggattttaaa

Function

NR:

description
uncharacterized protein C20orf24 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225481.1 True 1494 mRNA 0.46 4 1936124 1939390

Neighbor

gene id symbol gene type direction distance location
dhx35 dhx35,zgc:158828,LOC102790768 coding downstream 1286 1923187 ~ 1934838 (-)
spata2 spata2,LOC107703616,LOC107562628,LOC107713568,LOC107680738 coding downstream 284839 1645987 ~ 1651285 (-)
LOC122329162 LOC107678070,LOC107571224,LOC107705859,LOC107571225,LOC107678080,LOC107738794 coding downstream 317113 1617587 ~ 1619011 (-)
LOC122329161 LOC107678070,LOC107571224,LOC107705859 coding downstream 323118 1610269 ~ 1613006 (-)
LOC122329159 LOC107678070,LOC107571224,LOC107705859,LOC107571225,LOC107678080,LOC107738794 coding downstream 327493 1606277 ~ 1608631 (-)
plcg1 plcg1,LOC107703619 coding upstream 12760 1952150 ~ 1980965 (-)
top1b top1,LOC107562625,LOC107703620,LOC103147358,LOC107087615,LOC102223196,LOC106964922 coding upstream 43259 1982649 ~ 1996005 (-)
zgc:114123 LOC107723025,LOC107663206,LOC107557489 coding upstream 59309 1998699 ~ 2003597 (-)
ncoa6 LOC107663200,LOC107557491,LOC107723017 coding upstream 64941 2004331 ~ 2017858 (-)
LOC122328402 ggt7,LOC107557492,LOC107558798,LOC107668417,LOC107669686,LOC107723008 coding upstream 78980 2018370 ~ 2028499 (-)
G154077 NA non-coding downstream 127119 1808555 ~ 1809005 (-)
G154064 NA non-coding downstream 220153 1715243 ~ 1715971 (-)
G154061 NA non-coding downstream 224082 1711732 ~ 1712042 (-)
G154058 NA non-coding downstream 228669 1707139 ~ 1707455 (-)
G154057 NA non-coding downstream 229529 1706275 ~ 1706595 (-)
G154188 NA non-coding upstream 106933 2046323 ~ 2046544 (-)
G154194 NA non-coding upstream 138174 2077564 ~ 2079496 (-)
G154195 LOC107710236 non-coding upstream 153358 2092748 ~ 2095915 (-)
G154200 NA non-coding upstream 157394 2096784 ~ 2097008 (-)
LOC122328884 NA non-coding upstream 159864 2099254 ~ 2102158 (-)
smim29 si:dkey-226k3.4,LOC107690111,LOC107567962,LOC107724208,LOC107738791,LOC107678078,LOC107571229 other downstream 423795 1507698 ~ 1512329 (-)
l3mbtl1 l3mbtl1,LOC107736954,LOC107564793,LOC107684891,LOC107675169 other downstream 871350 1053377 ~ 1064774 (-)
vgll4a LOC107675174,LOC107736947,LOC107713758,LOC107684880,LOC107555803,LOC107574679 other downstream 1053940 865477 ~ 882184 (-)
ndnl2 ndnl2,LOC107736943,LOC107568481,LOC107714263,LOC107660884 other downstream 1150245 779085 ~ 785879 (-)
LOC122328833 LOC107669693 other upstream 163320 2102710 ~ 2116883 (-)
LOC122328838 LOC107680059,LOC107748448,LOC107565963 other upstream 830092 2769482 ~ 2839047 (-)
LOC122328849 LOC107718007,LOC107687303,LOC107571802,LOC107748430,LOC107680054,LOC107565975 other upstream 847906 2787296 ~ 2798533 (-)
si:zfos-905g2.1 si:zfos-905g2.1 other upstream 930228 2869618 ~ 2874758 (-)
G154446 NA other upstream 985658 2925048 ~ 2957272 (-)

Expression


Co-expression Network