gp9 (LOC107736950,LOC107675164,LOC107564798)


Basic Information

Item Value
gene id gp9
gene name LOC107736950,LOC107675164,LOC107564798
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 903508 ~ 905461 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225489.1
GATGcaaatgtttcaaatttaaatattttactttggTGGCATTTAcagtttgaaacattttgaattCATCATGTATAGCAAGCgtcattttcaatattttcaaactCATACTCGAGTGCAGATAAAAAGCACGTAGCTCAGAGAGCAGGGCATCTCTAATGTGCCGTTGGCAGATAGTCTTATCCTCTGCTCGCACAGGCCACGCGGTGATCACATGACTCACAATGCTTCCTGAGCTCTAACTGATCAATAGAAATAGTCTAAAACACAGGAAAAACTAGCCGTGCCTGTTTTAGTGCACCAAAATATTTGCGAGAAAAAACTATAGTGGATGTACGTCTCAGCTTAAAGCCAGGATGATTATTACGCTTCTGCACTTCTTGCTGTCAATCGTATGCTAAAAGGATGCTCTTTGCTTTAGGACTGGCCCTTCTCTTGTGCTCTCTCTTTGCACACGTCAATGCCCAGGCCTGCTGGTGCAAGACTTCACCGTCCCGAGGTCTGACGCTCAACTGCAGCTCTCAGGGCCTGAGGACCATCCCTCATCTTCCTGCAGAAATCACGGAACTCCTGCTGCAGGATAACCTCTTGACCACCGTGACCCCTGGGCATTTAGATGGGCTCCAGCACCTGCAGCTGGTCAACTTTTCCGGGAACCCCTTCCACTGCGACTGCAGCATCCAGTACTTAACACAATGGCTACAGAGGAATAAAGCCGTGTCTGTGATGCCACTGTGTACCAGTCCAGCAGAACTAGCCCAGAGGTCCATCCATGAACTCACTGATGCTGATTTCATGTCCTGCGTCTCTGATCACTGCTTTGGCTGGCTTTATAATGCCATCTTATGCGTCATGCTATGCTTTCTCATTGGTTTGCTGCTGTGGTGTGTGCAGCTTGCAAGAAACTCTACGTTTATTCTGGGAATTGATGAGAGACACACAGGCTTTGAGGCAGAATCTCTTCGATCGCTTAAACCCAAGCACAGAGTGAGGGTGAGGTACAGCATTGGGTCACTGAGCCCAGGGACCGATGACATGGACAAGCCTTTGTTCAACATGGACATCCTCCCTCAAATACTGGACGTCCTGAACAAGCAGCACAACATCAAGATTAAAGTACCATGAAAAACTA
>XM_043225490.1
GATGcaaatgtttcaaatttaaatattttactttggTGGCATTTAcagtttgaaacattttgaattCATCATGTATAGCAAGCgtcattttcaatattttcaaactCATACTCGAGTGCAGATAAAAAGCACGTAGCTCAGAGAGCAGGGCATCTCTAATGTGCCGTTGGCAGATAGTCTTATCCTCTGCTCGCACAGGCCACGCGGTGATCACATGACTCACAATGCTTCCTGAGCTCTAACTGATCAATAGAAATAGTCTAAAACACAGGAAAAACTAGCCGTGCCTGTTTTAGTGCACCAAAATATTTGCGAGAAAAAACTATAGTGGATGTACGTCTCAGCTTAAAGCCAGGATGATTATTACGCTTCTGCACTTCTTGCTGTCAATCGTATGCTAAAAGGACTGGCCCTTCTCTTGTGCTCTCTCTTTGCACACGTCAATGCCCAGGCCTGCTGGTGCAAGACTTCACCGTCCCGAGGTCTGACGCTCAACTGCAGCTCTCAGGGCCTGAGGACCATCCCTCATCTTCCTGCAGAAATCACGGAACTCCTGCTGCAGGATAACCTCTTGACCACCGTGACCCCTGGGCATTTAGATGGGCTCCAGCACCTGCAGCTGGTCAACTTTTCCGGGAACCCCTTCCACTGCGACTGCAGCATCCAGTACTTAACACAATGGCTACAGAGGAATAAAGCCGTGTCTGTGATGCCACTGTGTACCAGTCCAGCAGAACTAGCCCAGAGGTCCATCCATGAACTCACTGATGCTGATTTCATGTCCTGCGTCTCTGATCACTGCTTTGGCTGGCTTTATAATGCCATCTTATGCGTCATGCTATGCTTTCTCATTGGTTTGCTGCTGTGGTGTGTGCAGCTTGCAAGAAACTCTACGTTTATTCTGGGAATTGATGAGAGACACACAGGCTTTGAGGCAGAATCTCTTCGATCGCTTAAACCCAAGCACAGAGTGAGGGTGAGGTACAGCATTGGGTCACTGAGCCCAGGGACCGATGACATGGACAAGCCTTTGTTCAACATGGACATCCTCCCTCAAATACTGGACGTCCTGAACAAGCAGCACAACATCAAGATTAAAGTACCATGAAAAACTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K06263 GP9, CD42a; platelet glycoprotein IX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225489.1 True 1132 mRNA 0.47 2 903508 905461
XM_043225490.1 False 1115 mRNA 0.47 2 903508 905461

Neighbor

gene id symbol gene type direction distance location
raf1a raf1a,LOC107713759,LOC107684881,LOC108427788 coding downstream 8185 883192 ~ 895323 (-)
tnnc1a tnnc1a,LOC108427795,LOC107684904,LOC107736944,LOC100708228,LOC107566179,LOC107568483,LOC103385538 coding downstream 68927 808924 ~ 834581 (-)
LOC122329137 NA coding downstream 592931 308363 ~ 310577 (-)
LOC122329136 NA coding downstream 637476 258605 ~ 266032 (-)
LOC122329272 LOC107736949,LOC107675168,LOC107564797,LOC107555789,LOC107684883,LOC108181449,LOC107713762,LOC107684884,LOC107555806 coding upstream 150 905611 ~ 958991 (-)
nup210 nup210,LOC107684885,LOC107555788,LOC107675171,LOC107736952,LOC107564796,LOC107713743 coding upstream 60213 965674 ~ 991444 (-)
LOC122328452 wnt7a,LOC107684886,LOC107736972,LOC107713763,LOC107555800,LOC568110,LOC108276349,LOC107564804 coding upstream 104442 1009903 ~ 1018911 (-)
trnam-cau_118 NA coding upstream 114311 1019772 ~ 1019843 (-)
ptpdc1b LOC107736953,LOC107564794,LOC107684888,LOC107555790,LOC107713765 coding upstream 119196 1024657 ~ 1032351 (-)
G153893 cnbp non-coding downstream 3742 841719 ~ 899766 (-)
G153911 NA non-coding downstream 127458 770513 ~ 776050 (-)
G153760 NA non-coding downstream 220397 679034 ~ 683111 (-)
G153757 NA non-coding downstream 318926 575924 ~ 584582 (-)
LOC122328476 NA non-coding upstream 54813 960274 ~ 963577 (-)
G153966 NA non-coding upstream 300018 1205479 ~ 1206602 (-)
G153967 NA non-coding upstream 301239 1206700 ~ 1207587 (-)
G153984 LOC107727750,LOC107691341,LOC107566873 non-coding upstream 483901 1389362 ~ 1393135 (-)
LOC122328606 NA non-coding upstream 514396 1419857 ~ 1420454 (-)
vgll4a LOC107675174,LOC107736947,LOC107713758,LOC107684880,LOC107555803,LOC107574679 other downstream 21324 865477 ~ 882184 (-)
ndnl2 ndnl2,LOC107736943,LOC107568481,LOC107714263,LOC107660884 other downstream 117629 779085 ~ 785879 (-)
l3mbtl1 l3mbtl1,LOC107736954,LOC107564793,LOC107684891,LOC107675169 other upstream 147916 1053377 ~ 1064774 (-)
smim29 si:dkey-226k3.4,LOC107690111,LOC107567962,LOC107724208,LOC107738791,LOC107678078,LOC107571229 other upstream 602237 1507698 ~ 1512329 (-)
LOC122328833 LOC107669693 other upstream 1197249 2102710 ~ 2116883 (-)
LOC122328838 LOC107680059,LOC107748448,LOC107565963 other upstream 1864021 2769482 ~ 2839047 (-)
LOC122328849 LOC107718007,LOC107687303,LOC107571802,LOC107748430,LOC107680054,LOC107565975 other upstream 1881835 2787296 ~ 2798533 (-)

Expression


Co-expression Network