edem2 (edem2,LOC107697010)


Basic Information

Item Value
gene id edem2
gene name edem2,LOC107697010
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 4540302 ~ 4546406 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225492.1
CACACGCATGCGCAGTACGTGCACTTCCTATTGTCACTGTTTGTAGTATTTGTGCGTATCCATGTCGCTTGAAATTGTTGTATTGTTTGCCTCTGCTCACATCTCGTTACTTCATGcttacttttcttttctccGCCGTTTTTTGCGCCACATACCTGTCTCCGATCGTCAGTAATGTTAAAGGCAGAGATTTTACTGAGCAGGAAATGTCCCATTACAGGGACAGAATAAAGTCCATGTTTTATCATGCATACAACAGCTACTTGGAAAATGCATATCCCTATGATGAGCTGAGGCCCCTGACATGTGACGGGCAGGACACATGGGGCAGTTTCTCCCTCACACTCATTGATGCTCTGGACACACTGCTGATATTGGGAAACCACACGGAGTTCCAGCGCGTGGCCACGCTGCTCCAGGACACGGTTGATTTCGACTCGGATGTAAATGCGTCTGTGTTTGAGACGAACATACGAGTGGTCGGTGGGCTCCTCTCGGCTCATCTTCTGTCCAAGCGTGCCGGGATGGAGGTGGAGGAGGGCTGGCCCTGCTCCGGACCCCTTCTGCGCATGGCTGAGGACGCTGCCCGCAAACTGCTGCCTGCCTTCCAGACCCCCACAGGGATGCCATATGGCACGGTGAACCTGCTGAGGGGGGTGAACCCCAGCGAGACCCCGGTCACCTGCACCGCCGGAGTGGGGACCTTCATCCTGGAGTTCTCCACCCTCAGCCGACTGACCGGAGACCCCGTGTTTGAGAACGTGGCTCGCAAAGCTCTCAGGGCCTTATGGAGAACGCGCTCCGATATCGGCCTGgtggGCAACCATATAGATGTCATAACCTCTAAGTGGGTGGCTCAGGACGCAGGGATCGGGGCAGGAGTGGACTCATACTTCGAGTATCTAGTAAAAGGGGCCATTATGCTGCAAGACGAGGAGCTGCTTTCGATGTTTCACGAATTTGATAAGTCCATAAAGAACTACACTAAGTTTGATGATTGGTATCTGTGGGTGCAGATGCATAAGGGAACAGTATCAATGCCTGTGTTTCAGTCTCTGGAGGCGTTCTGGCCTGGACTGCAGAGTTTGATAGGTGATATTTCCAGCGCCACAAAGACCTTCCATAACTACTACAGTGTGTGGCGTCAGTTCGGAGGACTCCCGGAGTTCTACAGCATTCCTCAAGGATACACGGTGGACAAACGCGAGGGATACCCTCTGCGCCCAGAGTTGATCGAGAGCGCCATGTATCTGTATAAGGCCACCGGTGACCCCACATTCATGCAGCTTGGCCGGGACGCAATCGAGTCGATTGACAAAATCAGCCGGGTCAACTGTGGCTTTGCCACCGTGAAGGATGTAAGGGACCACAAGCTGGACAACCGCATGGAGTCCTTCTTCTTGGCCGAGACCATTAAATACCTCTACCTCCTCTTCGATCCCGAAAACTTCCTCCATAACACGGGCACAGAGTTCGAGCTGGGCGGCCTGCAGGGCGACTGCATTCTCAGCGCGGGCGGCTACGTGTTTAACACCGAGGCTCATCCGCTGGACCCCGCCGCGCTCCACTGCTGCAGCCGATACCAGAGCGAGCGCGAGGAGCTACAGGACATACTCCTCAGCCTCTCAGAACCACTCAGGCCCGAGGAGACGCCCGGCGCGGGACGCTCGCAGGAGAGCATCGCACTGAAGCCGGGAGAGAGGAGGAAAGCTCGGGTGCTCTCCTGTCCCACGCAGCCCTTCAGTGCCAAACTGGCTGTCCTGGGACAGGTCTTCTCTGACAACTCTTGAACAGACAGCGTGTAAAGATGTAGATTATGTTTGTAATTTAACTTCGGAGagattaaatgttttctaaatatgcGTGGATTTTGCTCCactctttttattaaaaaaagttttagatgACAAAA
>XM_043225493.1
CACACGCATGCGCAGTACGTGCACTTCCTATTGTCACTGTTTGTAGTATTTGTGCGTATCCATGTCGCTTGAAATTGTTGTATTGTTTGCCTCTGCTCACATCTCGTTACTTCATGcttacttttcttttctccGCCGTTTTTTGCGCCACATACCTGTCTCCGATCGTCAGTAATGTTAAAGGCAGAGATTTTACTGAGCAGGAAATGTCCCATTACAGGGACAGAATAAAGTCCATGTTTTATCATGCATACAACAGCTACTTGGAAAATGCATATCCCTATGATGAGCTGAGGCCCCTGACATGTGACGGGCAGGACACATGGGGCAGTTTCTCCCTCACACTCATTGATGCTCTGGACACACTGCTGATATTGGGAAACCACACGGAGTTCCAGCGCGTGGCCACGCTGCTCCAGGACACGGTTGATTTCGACTCGGATGTAAATGCGTCTGTGTTTGAGACGAACATACGAGTGGTCGGTGGGCTCCTCTCGGCTCATCTTCTGTCCAAGCGTGCCGGGATGGAGGTGGAGGAGGGCTGGCCCTGCTCCGGACCCCTTCTGCGCATGGCTGAGGACGCTGCCCGCAAACTGCTGCCTGCCTTCCAGACCCCCACAGGGATGCCATATGGCACGGTGAACCTGCTGAGGGGGGTGAACCCCAGCGAGACCCCGGTCACCTGCACCGCCGGAGTGGGGACCTTCATCCTGGAGTTCTCCACCCTCAGCCGACTGACCGGAGACCCCGTGTTTGAGAACGTGGCTCGCAAAGCTCTCAGGGCCTTATGGAGAACGCGCTCCGATATCGGCCTGgtggGCAACCATATAGATGTCATAACCTCTAAGTGGGTGGCTCAGGACGCAGGGATCGGGGCAGGAGTGGACTCATACTTCGAGTATCTAGTAAAAGGGGCCATTATGCTGCAAGACGAGGAGCTGCTTTCGATGTTTCACGAGTTGATCGAGAGCGCCATGTATCTGTATAAGGCCACCGGTGACCCCACATTCATGCAGCTTGGCCGGGACGCAATCGAGTCGATTGACAAAATCAGCCGGGTCAACTGTGGCTTTGCCACCGTGAAGGATGTAAGGGACCACAAGCTGGACAACCGCATGGAGTCCTTCTTCTTGGCCGAGACCATTAAATACCTCTACCTCCTCTTCGATCCCGAAAACTTCCTCCATAACACGGGCACAGAGTTCGAGCTGGGCGGCCTGCAGGGCGACTGCATTCTCAGCGCGGGCGGCTACGTGTTTAACACCGAGGCTCATCCGCTGGACCCCGCCGCGCTCCACTGCTGCAGCCGATACCAGAGCGAGCGCGAGGAGCTACAGGACATACTCCTCAGCCTCTCAGAACCACTCAGGCCCGAGGAGACGCCCGGCGCGGGACGCTCGCAGGAGAGCATCGCACTGAAGCCGGGAGAGAGGAGGAAAGCTCGGGTGCTCTCCTGTCCCACGCAGCCCTTCAGTGCCAAACTGGCTGTCCTGGGACAGGTCTTCTCTGACAACTCTTGAACAGACAGCGTGTAAAGATGTAGATTATGTTTGTAATTTAACTTCGGAGagattaaatgttttctaaatatgcGTGGATTTTGCTCCactctttttattaaaaaaagttttagatgACAAAA

Function

symbol description
edem2 Predicted to enable calcium ion binding activity; hydrolase activity, hydrolyzing O-glycosyl compounds; and lytic transglycosylase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human EDEM2 (ER degradation enhancing alpha-mannosidase like protein 2).

NR:

description
PREDICTED: ER degradation-enhancing alpha-mannosidase-like protein 2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K10085 EDEM2; ER degradation enhancer, mannosidase alpha-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225492.1 True 1912 mRNA 0.53 11 4540302 4546406
XM_043225493.1 False 1642 mRNA 0.54 9 4540302 4546406

Neighbor

gene id symbol gene type direction distance location
si:ch211-117c9.2 LOC107750896,LOC107696933 coding downstream 9966 4521926 ~ 4530336 (-)
trim35-39 NA coding downstream 18522 4517836 ~ 4521780 (-)
LOC122328988 LOC107697013,LOC107750890,LOC107601349,LOC101884738,LOC107705748 coding downstream 197663 4340087 ~ 4342639 (-)
ptges3b ptges3b,LOC107750889,LOC107601352,LOC107673275,LOC107697015,LOC107705749 coding downstream 203277 4330715 ~ 4337025 (-)
baz2a baz2a,LOC107697014,LOC107673266,LOC107705669,LOC107601319 coding downstream 212385 4303555 ~ 4327917 (-)
prpf6 prpf6,LOC107705744,LOC107697009,LOC107673318 coding upstream 4623 4551029 ~ 4566274 (-)
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding upstream 265382 4811788 ~ 4815325 (-)
g6pd g6pd,LOC107723128,LOC107705737,LOC107693547,LOC107697003 coding upstream 269416 4815822 ~ 4827179 (-)
adcy6a adcy6a,adcy6,LOC107705664 coding upstream 289575 4835981 ~ 4877028 (-)
ddx23 ddx23,LOC107705733 coding upstream 368084 4914490 ~ 4920882 (-)
G154895 rbm38,LOC107565990,LOC107705751,LOC107673236,LOC107697017 non-coding downstream 196435 4283769 ~ 4343867 (-)
LOC122328378 NA non-coding downstream 338162 4200644 ~ 4202140 (-)
G154787 NA non-coding downstream 474773 4063965 ~ 4065529 (-)
G154789 NA non-coding downstream 475422 4063523 ~ 4064880 (-)
G154783 NA non-coding downstream 489722 4050290 ~ 4050580 (-)
G154933 NA non-coding upstream 477 4546883 ~ 4550218 (-)
G155085 NA non-coding upstream 133577 4679983 ~ 4680279 (-)
G155092 NA non-coding upstream 161259 4707665 ~ 4710337 (-)
G155093 NA non-coding upstream 166283 4712689 ~ 4713082 (-)
G155096 NA non-coding upstream 181448 4727854 ~ 4731140 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other downstream 345304 4173914 ~ 4194998 (-)
lad1 LOC107746516,LOC107696941,LOC107559160 other downstream 634410 3894966 ~ 3905892 (-)
tspan2b tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202 other downstream 1022160 3502265 ~ 3518142 (-)
LOC122328836 LOC107566068 other downstream 1094338 3434124 ~ 3445964 (-)
G154445 NA other downstream 1588674 2925305 ~ 2951628 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other upstream 281072 4827478 ~ 4834520 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other upstream 908011 5454417 ~ 5455047 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other upstream 931435 5477841 ~ 5479822 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other upstream 937806 5484212 ~ 5496474 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other upstream 2184445 6730851 ~ 6731886 (-)

Expression


Co-expression Network