slmapb (slmapb,LOC107560933,LOC107712736,LOC107699575)


Basic Information

Item Value
gene id slmapb
gene name slmapb,LOC107560933,LOC107712736,LOC107699575
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11695816 ~ 11704390 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225498.1
ACAGCCGTTTAAGTGTGTGGTTTTGTCTGGCGTACCCCCAGACACGACATTTAGACGCGCCGGTGCCCCCCGCGCTTTAAAGTAGACTCGTCCAGTTCTCCTCACCGGAGCGAATCGATAGTTAAAGAAGCCTGAATATCGCAGCTCTGTTTCTGCACCGGCTGAAGTGACATCACGAGTGTTCAGTGGGGAAAACAATGGAGGAACAGAAGCTGAAAGATCCTATTAATAAAGTGTCTCTTATCAAAGATGAGCTGAGCAGGAGCACTGTGGAGGCCAGTGAGTCAGAGAAGGTCATCCAACGTCTGAACCAGGAACTGCAGGAAGCCAATGAACAGGCCAACTCGGGCAAACACAAGTGTATTGAACTCCAAGGTTTATTGGAGGAGGAGAAAAGAGCCAATAAGCAACAGGCGGAGGAGTCGGCAAAACAGATAAAGGTCTTACAGACTCAGCTCCAGAAGCTGCAGGAAGATATGGAGAATCTCAGGGATCAGAAGGACAGCTCAATCTTCAGCTTGCGACAGGAAGCGCGCACGGCTCAGGAGGAAGTGCAGGTGTTGCGCCGCACTATGGAGAAAACTGCAGCTGAGCGAGAGCATGAGGTCAGCGCACTGAAAGGAAACCTAGCAACGCTAACTTCTGAGCTGGAGAAATGGCAGTTGGCTGCAAGCAAGTATGAGCGTGAGCTCGACAGTGTACAGGCTAGTCACCAGCAGCAGAACCAGCAGAGAGACAGGGCTGCCAAACAGCAAGcgAGCGAGCTGGAGCGGCTGCAGAAGGACTGTGAGAGCCTGAGGAGGGAGTGTGCGTCTCTGAGGtcagagagagagcagctgGCTGATAAACAGCAGAAAGAGAAGATCAGCCTGCAGAGTGAGAGCAGCACCCTGCGCTCAGAGAAAGAACAGCTACTGAAGAAACAGCAGCAGCTGGAGAAAGAGCTGGACAGCTCCAAGAAACAGAGCACAAGCCTGAGCAATACAGTCAAGACTCTGGAGAAGACGCAGGCAGACCTGGAGAAACGGCTGAGCGTCCTGCAGGAGGAACACCAGAGAGCCACCAGCCAGCTGGAGCAAAGCAATAGCAGGATCAAAGAACTGCAGAAAGAGTATGAGGAGATCCAGGCAGAGCTGTCAGGCCTCAGGGAGAAGTATGAGAATGCAGAGGAGGAGAAACGCTCCTTCAATCTGGAGCTGCAGCAGAGCCAAGAGCGCCTGAGGCTTCTGCAGGACAAAGAAAACCATCTGTCTTTATTGCAGCCCATCCTAGCCGTAGCCATCGGCCTTGTCCTGGCTTTGCTGTATTGGTGCTTGGGCCCATTGTGGTAGAAAGGGAAAATGGATCCGGTGGATGCCCGTCGCTGCTGTAACCATTGCCGTGACGGGGTATTTGCTTTCAAAGACCTCAAAATGAACAACGTGATGAACCAGTAACAAGCACACGCACCATGACATGCATACCTAGTAAATGTTTCTCAAACGTGTTGACATTTGTATCCTTTTAGTCTGTGTGGTGTTAGTCTGAGTAACGAGCGTCTAAATGCAACTTCTTACTCAAGTATTGAAGGCCTTAGGATAATAACGTCACCTTATTCTCTCATTTGCAccatatcattattattattattttgtttgttttttttaattagaggTTCTGTATGCATTGCATTTTGAAGTATCAAATAACAGGCATTTTATTGAACACTGTTGCTTTGCCAAACAAACACTTAGTGAATTGCCttatataacataacattagATAAACAAACGTTTATACCTCCTTGAATGAGCACTTCCATACGAGGAAATTATTCAGAATTGTAAAGCCCACTACAATAACATATTCAAGACCATTGAGTGTTACGTTTTAACTCAATCATATGTTTTGTGGCTTAAAGGCCTAAACCTGCCATATAATGTCAGTCTTTGCACCTTATATGAGGCCATTAGTGATTAGTCTATGCACTGTACTTTATCGTGATAAGGATCTGacgagatgatgatgatgatgatgatgatgataagcACTGTTTACTTAGATGTTAGAGCGCTAATGTGTCCGAAGGAGACCTATTATAGAgtgtttatgatttattatgtttattactTGTACAGAGATTTAAGCAAAAACTACCCGATCTAACAGATGATAATTGCAATAAATGAGCAAAAGTGAAGTTCAACCCAA
>XM_043225499.1
ACAGCCGTTTAAGTGTGTGGTTTTGTCTGGCGTACCCCCAGACACGACATTTAGACGCGCCGGTGCCCCCCGCGCTTTAAAGTAGACTCGTCCAGTTCTCCTCACCGGAGCGAATCGATAGTTAAAGAAGCCTGAATATCGCAGCTCTGTTTCTGCACCGGCTGAAGTGACATCACGAGTGTTCAGTGGGGAAAACAATGGAGGAACAGAAGCTGAAAGATCCTATTAATAAAGTGTCTCTTATCAAAGATGAGCTGAGCAGGAGCACTGTGGAGGCCAGTGAGTCAGAGAAGGTCATCCAACGTCTGAACCAGGAACTGCAGGAAGCCAATGAACAGGCCAACTCGGGCAAACACAAGTGTATTGAACTCCAAGGTTTATTGGAGGAGGAGAAAAGAGCCAATAAGCAACAGGCGGAGGAGTCGGCAAAACAGATAAAGGTCTTACAGACTCAGCTCCAGAAGCTGCAGGAAGATATGGAGAATCTCAGGGATCAGAAGGACAGCTCAATCTTCAGCTTGCGACAGGAAGCGCGCACGGCTCAGGAGGAAGTGCAGGTGTTGCGCCGCACTATGGAGAAAACTGCAGCTGAGCGAGAGCATGAGGTCAGCGCACTGAAAGGAAACCTAGCAACGCTAACTTCTGAGCTGGAGAAATGGCAGTTGGCTGCAAGCAAGTATGAGCGTGAGCTCGACAGTGTACAGGCTAGTCACCAGCAGCAGAACCAGCAGAGAGACAGGGCTGCCAAACAGCAAGcgAGCGAGCTGGAGCGGCTGCAGAAGGACTGTGAGAGCCTGAGGAGGGAGTGTGCGTCTCTGAGGtcagagagagagcagctgGCTGATAAACAGCAGAAAGAGAAGATCAGCCTGCAGAGTGAGAGCAGCACCCTGCGCTCAGAGAAAGAACAGCTACTGAAGAAACAGCAGCAGCTGGAGAAAGAGCTGGACAGCTCCAAGAAACAGAGCACAAGCCTGAGCAATACAGTCAAGACTCTGGAGAAGACGCAGGCAGACCTGGAGAAACGGCTGAGCGTCCTGCAGGAGGAACACCAGAGAGCCACCAGCCAGCTGGAGCAAAGCAATAGCAGGATCAAAGAACTGCAGAAAGAGTATGAGGAGATCCAGGCAGAGCTGTCAGGCCTCAGGGAGAAGTATGAGAATGCAGAGGAGGAGAAACGCTCCTTCAATCTGGAGCTGCAGCAGAGCCAAGAGCGCCTGAGGCTTCTGCAGGACAAAGAAAACCATGGAAAATGGATCCGGTGGATGCCCGTCGCTGCTGTAACCATTGCCGTGACGGGGTATTTGCTTTCAAAGACCTCAAAATGAACAACGTGATGAACCAGTAACAAGCACACGCACCATGACATGCATACCTAGTAAATGTTTCTCAAACGTGTTGACATTTGTATCCTTTTAGTCTGTGTGGTGTTAGTCTGAGTAACGAGCGTCTAAATGCAACTTCTTACTCAAGTATTGAAGGCCTTAGGATAATAACGTCACCTTATTCTCTCATTTGCAccatatcattattattattattttgtttgttttttttaattagaggTTCTGTATGCATTGCATTTTGAAGTATCAAATAACAGGCATTTTATTGAACACTGTTGCTTTGCCAAACAAACACTTAGTGAATTGCCttatataacataacattagATAAACAAACGTTTATACCTCCTTGAATGAGCACTTCCATACGAGGAAATTATTCAGAATTGTAAAGCCCACTACAATAACATATTCAAGACCATTGAGTGTTACGTTTTAACTCAATCATATGTTTTGTGGCTTAAAGGCCTAAACCTGCCATATAATGTCAGTCTTTGCACCTTATATGAGGCCATTAGTGATTAGTCTATGCACTGTACTTTATCGTGATAAGGATCTGacgagatgatgatgatgatgatgatgatgataagcACTGTTTACTTAGATGTTAGAGCGCTAATGTGTCCGAAGGAGACCTATTATAGAgtgtttatgatttattatgtttattactTGTACAGAGATTTAAGCAAAAACTACCCGATCTAACAGATGATAATTGCAATAAATGAGCAAAAGTGAAGTTCAACCCAA

Function

symbol description
slmapb Predicted to be involved in protein localization to plasma membrane; regulation of membrane depolarization during cardiac muscle cell action potential; and regulation of voltage-gated sodium channel activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; median fin fold; nervous system; neural crest; and pharyngeal arch 3-7 skeleton. Orthologous to human SLMAP (sarcolemma associated protein).

NR:

description
sarcolemmal membrane-associated protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225498.1 True 2190 mRNA 0.46 10 11695816 11704390
XM_043225499.1 False 2102 mRNA 0.46 9 11695816 11704390

Neighbor

gene id symbol gene type direction distance location
atp6ap1lb atp6ap1lb,LOC107672058,LOC107737620,LOC107560932,LOC107570286,LOC103031199,LOC108436292,LOC107699574,LOC105890636 coding upstream 2325 11685712 ~ 11693491 (+)
LOC122328536 LOC107737719,LOC107671965,LOC107560886,LOC107656999,LOC107570275,LOC107712682,LOC101883217 coding upstream 57793 11634276 ~ 11638023 (+)
apobec2b apobec2b,LOC107737624,LOC107560928,LOC107672022,LOC107657013,LOC107712740 coding upstream 166155 11527406 ~ 11529661 (+)
si:dkey-109j17.5 si:dkey-109j17.5,LOC107672024,LOC107737623,LOC107560927,LOC107562462,LOC107657015,LOC107712743 coding upstream 170948 11520750 ~ 11524868 (+)
ccdc115 LOC107560885,LOC107737721,LOC107672061,LOC107657017,LOC107562463,LOC107712745 coding upstream 175211 11518832 ~ 11520605 (+)
flnb LOC107737717,LOC107560870,LOC107671935 coding downstream 1369 11705759 ~ 11722286 (+)
abhd6b abhd6b,LOC107737716,LOC107712730,LOC107560889,LOC107671974,LOC107699577 coding downstream 18766 11723156 ~ 11726492 (+)
dnase1l1 dnase1l3,LOC107737612,LOC107672041,LOC107560934,LOC107570280,LOC107712731 coding downstream 34405 11738795 ~ 11741871 (+)
flna flna,LOC107737611,LOC107712729,LOC107570276,LOC107699576 coding downstream 58039 11762429 ~ 11794733 (+)
emd LOC107737610,LOC107671981,LOC107712726,LOC107560939,LOC107699568,LOC107570273 coding downstream 92104 11796494 ~ 11799916 (+)
G156701 NA non-coding upstream 39436 11655795 ~ 11656380 (+)
G156700 NA non-coding upstream 40500 11654916 ~ 11655316 (+)
G156699 asb14b,LOC107560887,LOC107671999,LOC107737718 non-coding upstream 41199 11654255 ~ 11654617 (+)
G156698 asb14b,LOC107671999,LOC107560887,LOC107737718,LOC108276494 non-coding upstream 41656 11653380 ~ 11654160 (+)
G156690 fam208ab,LOC107737622,LOC107712737,LOC107570279 non-coding upstream 44709 11614130 ~ 11651107 (+)
G156828 NA non-coding downstream 29866 11734256 ~ 11734937 (+)
G156823 LOC107560942,LOC107737604,LOC107712727,LOC107672007 non-coding downstream 59317 11763707 ~ 11822844 (+)
G156843 tktb,LOC108410447,LOC107671986,LOC103046877,LOC107737598 non-coding downstream 123351 11827741 ~ 11926375 (+)
G156881 LOC107737595,LOC107671985,LOC107568839 non-coding downstream 242294 11946684 ~ 11972922 (+)
LOC122328486 NA non-coding downstream 325756 12030146 ~ 12037888 (+)
G156586 NA other upstream 518783 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 610212 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 771828 10913904 ~ 10923988 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other upstream 994921 10698798 ~ 10700895 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 1123570 10563344 ~ 10572246 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other downstream 26590 11730980 ~ 11732361 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 541803 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 2389688 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2595311 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2899403 14603793 ~ 14636817 (+)

Expression


Co-expression Network