eef1a2 (eef1a2,LOC107724190,LOC107705720,LOC107551525,LOC107696983,LOC107693560,LOC108429306,LOC108276238)


Basic Information

Item Value
gene id eef1a2
gene name eef1a2,LOC107724190,LOC107705720,LOC107551525,LOC107696983,LOC107693560,LOC108429306,LOC108276238
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 5437518 ~ 5443533 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225509.1
TACAATTTCTGATGTACTAAAATACtgactgcaaaaaataaatatttacatctagAATAACCTGGTAATAAACATTCTTGAAAATAAGAATAGTACATGTGTATTAGGAATTTGTACGTGTCATATTTCAGGGAGCCAATCCGATTCTTATCCAGCAGGAGTTAGTTGAGAATAAGATGCTGAGTCACTGAACGCCGCTCTATTCCAGTGTGTTCCTCCTTCATCTTTCGTACTTTTCCTCTCGGCTGGTTTCTGCTGCTGTTGCAGCTGTCTCACTGCAGTCCCTCACCACCAGCCTCCCCCCACTTTGAGTGCCGCATTGCTGTATCAAAGTGGGGTGAGTTCATTACGCGCACAGACTTGGACTGTGCCGCCACCTTTGCAGGAGCACAGAGTGTCTGTTTGCTGAGGGGAGAACAGGGTCTGCCTGTCAGCTGCAGACAGAAGAAAGCTCCAACCGTTCTCATCCTTTCCTCCGGTCCTGTGCCATCATGGGGAAAGAGAAGATCCACATCAACATAGTGGTCATCGGCCATGTTGATTCTGGGAAATCCACCACCACTGGCCATCTCATCTATAAATGTGGAGGAATTGATAAAAGAACCATCGAGAAGTTTGAAAAAGAGGCTGCAGAGATGGGAAAAGGTTCCTTTAAGTACGCCTGGGTTCTGGACAAGCTGAAGGccgagagggagagaggaatTACCATAGACATCTCACTCTGGAAGTTTGAGACCACCAAATACTACATAACCATAATAGATGCACCAGGACACCGAGACTTCATCAAGAACATGATCACTGGGACTTCTCAGGCCGATTGTGCTGTTCTAATTGTAGCAGCTGGAGTGGGCGAATTTGAGGCAGGCATCTCTAAAAATGGACAAACAAGGGAACACGCCCTGCTGGCGTACACGCTGGGCGTCAAGCAGCTGATTGTAGCCGTCAACAAGATGGACTCCACGGAGCCGTCCTATAGTGAGAAACGCTACGACGAGATCGTTAAAGAAGTGAGCGCCTACATCAAAAAGATCGGTTATAGCCCCGCCTCTGTGCCCTTCGTCCCAATTTCAGGTTGGCATGGCGACAACATGCTGGAACCGTCTTCTAATATGCCGTGGTTTAAAGGCTGGAAGCTGGACAGGAAGGAGCATCATGCCAGTGGCGTTACTCTACTGGAAGCTCTCGATACCATCATGCCTCCAACACGCCCCACTGACAAACCCTTGCGTCTGCCCCTGCAAGACGTCTACAAGATTGGAGGTATAGGCACTGTGCCGGTGGGCAGGGTGGAGACGGGTATCCTGCGCCCCAGTATGGTGGTGACCTTCGCCCCGGTCAACATCACTACAGAGGTGAAGTCGGTGGAGATGCATCACGAGTCTCTGAGTGAAGCTCTGCCTGGAGACAACGTGGGCTTTAATGTGAAGAATGTGTCCGTTAAAGACATAAGAAGAGGTAACGTTTGTGGGGACAGTAAGTCAGACCCGCCTCAGGAAGCTTCAGGGTTCACAGCACAGGTCATCATTTTGAATCACCCAGGACAGATCAGCGCAGGTTACTCTCCTGTCATAGACTGCCACACGGCTCACATTGCCTGTAAGTTTGCTGAGCTTAAGGAGAAGATCGATCGCCGTTCGGGCAAGAAGCTGGAAGACAACCCCAAAAGCCTGAAGTCTGGAGATGCTGCCATTGTGGACATGATCCCAGGAAAACCAATGTGTGAGAGCTTCTCTCAATACCCTCCACTGGGACGCTTCGCCGTCAGAGACATGAGACAGACCGTTGCAGTCGGTGTCATCAAAAGCGTGGAAAAGAAGATTGGCGGCAGCGGAAAAGTGACCAAATCTGCTCAGAAAGCTCAAAAATCTGGCAAATGAATCTGAATCTCCGAGTCACCTTGTCACCTCAGGCCCTCCCCAGCTTACATGCCCCTCTCATCTGGGCATGCTCAGTCTGTTTCCCCCGTGTGCTTGAAATATACACTCGAACCAAACTGGAGCTTGATGGACTGAAGGAAATGATGAAAGACATTACTACTTTGTGATTGGTTGCACTGTATATTCACTTTTACCAGAAGACCGGCACACATGTTGCATGGATGTCTGTCTTGATATATGCACGGcatctgttaaatgaatgtaGCTGGTagagctgagtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgcgcagTTGAAAGAAACCAGAATAATGATGATGTCCAAAGGAAAGTTTTGTATAGTTTATAACTGAGCAGTGACTGAAGGCTAATTGATCCAAAGCACCATTTATCTCCTTTCAGACCCTTGCAGCTGAAACCTgtgataaatcaataaaatattgccCAAGAACACgagtttataaattaaa

Function

symbol description
eef1a2 Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in translational elongation. Is expressed in central nervous system; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 38; developmental and epileptic encephalopathy 33; and ovarian cancer. Orthologous to human EEF1A2 (eukaryotic translation elongation factor 1 alpha 2).

NR:

description
PREDICTED: elongation factor 1-alpha 2 isoform X1

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225509.1 True 2371 mRNA 0.48 10 5437518 5443533

Neighbor

gene id symbol gene type direction distance location
sulf2b sulf2b,LOC107724188,LOC107693554,LOC107551524,LOC107705722,LOC108429304 coding downstream 82623 5233697 ~ 5354895 (-)
arhgap46b si:ch211-218g4.2,LOC107724193,LOC107696985,LOC107705724,LOC107693558,LOC107575029 coding downstream 204750 5170965 ~ 5232768 (-)
phf20b phf20b,LOC107696986,LOC107724192,LOC107705726,LOC107594424,LOC107575030,LOC107693555 coding downstream 268190 5153961 ~ 5169328 (-)
ndrg3b ndrg3b,ndrg3,LOC107724194,LOC107696989,LOC107705728,LOC107693556 coding downstream 283983 5114627 ~ 5153535 (-)
sla2b LOC107705729,LOC107696991,LOC107594020,LOC107724197,LOC107693557 coding downstream 326594 5093833 ~ 5110924 (-)
LOC122329294 mrgbp,LOC107724191,LOC107705719,LOC107696984,LOC107693561 coding upstream 1234 5444767 ~ 5449598 (-)
LOC122329287 haus8,LOC107551529,LOC107696953,LOC107663059,LOC107577736 coding upstream 13132 5456665 ~ 5460124 (-)
LOC122329290 zgc:92113,LOC107746330,LOC107554216,LOC107709233,LOC107697031,LOC107673507 coding upstream 61873 5505406 ~ 5509560 (-)
LOC122329296 LOC107673498,LOC107746338,LOC107709218,LOC107554217,LOC107696970 coding upstream 66162 5509695 ~ 5513388 (-)
LOC122329292 LOC107696963,LOC107559168,LOC107746530,LOC107707374,LOC107673558,LOC107598155 coding upstream 278955 5722488 ~ 5726263 (-)
LOC122329300 NA non-coding downstream 5994 5430546 ~ 5431524 (-)
G155157 NA non-coding downstream 324554 5111844 ~ 5112964 (-)
G155156 NA non-coding downstream 340388 5096532 ~ 5097130 (-)
G155153 NA non-coding downstream 348421 5085142 ~ 5089097 (-)
G155112 cacnb3a,LOC107705735,LOC107696997,LOC107724200,LOC107601341 non-coding downstream 494501 4908918 ~ 4943017 (-)
G155238 NA non-coding upstream 81508 5525041 ~ 5547708 (-)
LOC122329299 NA non-coding upstream 210485 5654018 ~ 5662956 (-)
G155254 NA non-coding upstream 371778 5815311 ~ 5919163 (-)
G155308 NA non-coding upstream 747564 6191097 ~ 6191320 (-)
G155388 NA non-coding upstream 905474 6349007 ~ 6351825 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other downstream 602998 4827478 ~ 4834520 (-)
LOC122329268 LOC107707377,LOC107673205,LOC107746501,LOC107697018,LOC107601321,LOC107598138,LOC108443130,LOC103026736,LOC106572423 other downstream 1242520 4173914 ~ 4194998 (-)
lad1 LOC107746516,LOC107696941,LOC107559160 other downstream 1531626 3894966 ~ 3905892 (-)
tspan2b tspan2b,LOC107709234,LOC107696969,LOC107746340,LOC107566064,LOC107673514,LOC107554202 other downstream 1919376 3502265 ~ 3518142 (-)
LOC122328836 LOC107566068 other downstream 1991554 3434124 ~ 3445964 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other upstream 10884 5454417 ~ 5455047 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other upstream 34308 5477841 ~ 5479822 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other upstream 40679 5484212 ~ 5496474 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other upstream 1287318 6730851 ~ 6731886 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other upstream 1323075 6766608 ~ 6823032 (-)

Expression


Co-expression Network