b4galnt1a (b4galnt1a,LOC107708855,LOC107681939,LOC107586541,LOC107716216,LOC107570598,LOC107695798)


Basic Information

Item Value
gene id b4galnt1a
gene name b4galnt1a,LOC107708855,LOC107681939,LOC107586541,LOC107716216,LOC107570598,LOC107695798
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16222809 ~ 16234574 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225543.1
GCAGCCGACAGCGGTGCACCTTGCTCATGTTCCGCATAACGCTTTATATCCGGTTACTTATACCTACTGAACATGTGTAATTAGTGCTTTCtaacctttttcttctttttttacaacTGGATAACGTACGTCTCATCAGTGCTTGCTAAATACGCTACATCCAATTGATTGACTGATTATCCGAGCATCAGGGGATTCACGTCCTCGTTTTGACTCTTGCCACAAGCGTCTTTGAACCTGAGCCAGTTAAATGGATTTTGGATTTTCCCAATTTTAGGGCGCTTCAGGCAATTATGTGTTctgtaaaaaagaaagcagtGGCAGTTTTGTTGGTGATCTTGCCGCTCACTGCCAGGCTCATTCACCACTGGAATTCATACACGATTACGACGACAGACGTGCTACAAAGACCAGACTCTTTAAAAGTGCTGCTGGAGGAAAGGATACAAAACATGAACCCTAAAGATTTCCATATTCCTTTCCATATCAAAGACAGCCTGTCAAAGGGTCCTGCCAATAatgggtgtgtttgtgaaggCGATAAACCACGCATTCATTTCCCATTCGCTCAGTTGCTGTTTCCTCAAATATCAGCTACCCAGCTAAATGCGTCCTTCCAGGATTCAGACCTGCAAAAAGcaaagcaatacagaaaaaaagagtatCAAAGTTTCCATAAGAGGATGTATACAGCTGCAGACTCACTTATCTTAGCTGAAGCTAACAGCCCGCTTCAGTACCCTACGCAGGGTGTGGAGGTCAGACCAACAAGGACTATCCTTATTCCtggtTTAAGTCTGAACCAAATATACAGAAAGGGCCCTTATTTGGTAGATCTGATTGCTACAATGGGAACATTTAATACAGCAGCGCTGGTGGATGGAGTGCAAGTCAAAGGGGAAGGAGAGATGCATATTAGATTTCTAAGCAAATCACTGGCTTCCCTGAACAGACAGCTAGAGCTTGTTacctacacaaacacacggTTCCATCCCAACACAGCAGACATAGTACAATTCAAAGCAGGTATATTCCATGCCTCCTTTACTGTTAAGATCAGACATCCACCAATGCCTAAATTCTATAATCCTGGACCcaaaaatgaatacaatataaacactCTTGTCACAATTGCCACGAAAACATTTCTACGCTATGATAAACTTCAGGATTTGATCAATAGCATTCGACGGTTCTACCCCACTATAACTATAGTGATAGCTGATGACACAGAGGAGCCTAAACCTGTATCTGGACCCTACATTGAACATTATATCATGCCCTTTGGCAAGGGCTGGTTTGCTGGCCTCAACCTGGCCGTCTCTCAGGTAGCAACCAAATATGTGCTTTGGGTGGATGATGACTTTATTTTCACCTCAAGCACCAAGCTGGAAAAAATGGTGGATATTTTGGAGAGAACAACTTTGGATCTGGTGGGCGGAGCTGTGAGAGAAGTGACGGGATACACTGCCACCTATCGACACATCATCTCCACAGACGCCGGGGATGAAGAGGGGGATTGCTTACACATAAGGACGGGGTTCCACCACGGCATGGAGGGGTTTCCCAATTGTGTAGTTGCAGATGCCGTCATCAATTTCTTCATGGCTCGCACAGAAAAGATACGACAGGTGGGCTTTGACCCGCGTCTGCCTCGGGTTGGCCATTTAGcattttttattgatGGGCTCGGCTCCCTCCACGTGGGCTCCTGTGACGATATTATCATCAGCCATGCGTCGAAGATCAAGGCGATGTTTCCATGGGGACAGTCTGAGAACGACAAGGCCTATTCAAAGTTCCGCTATACTTCCGCTGACGATACCTCTATGAGTGAATACGATCTTTATTATCTCaagaatcattttaaatgtgtcaccAGTGACTGATAATATGGAGTGGCTAAACTTCTGCAAAGCACTTTCATTGCAGACGCCCTCAAACAAAGCCAGAAAGGACATGAATAGATAGGGCTGTTACTCGTGTCTTTGTATTGATTGATGTAATTTTGTCATTCCTGAAAAGTGTTATATGACATTATGTTGAAaaccaaaggttttttttgtgcatacgTGTTAATGATGGATTCATTGacgttttgatgtttttattttgaagagagaaaataattaGACTATTTGAGTATCTTTCTTTTCATAagaataattttacattttgtagcCTATTAtgcaaactaatttttttttttaaattaacaggTTGGCTGATGCATCATCATTATGGGCATTGCGTCTTACCCtgttagctaaaaaa
>XM_043225544.1
GCAGCCGACAGCGGTGCACCTTGCTCATGTTCCGCATAACGCTTTATATCCGGTTACTTATACCTACTGAACATGTGTAATTAGTGCTTTCtaacctttttcttctttttttacaacTGGATAACGTACGTCTCATCAGTGCTTGCTAAATACGCTACATCCAATTGATTGACTGATTATCCGAGCATCAGGGGATTCACGTCCTCGTTTTGACTCTTGCCACAAGCGTCTTTGAACCTGAGCCAGTTAAATGGATTTTGGATTTTCCCAATTTTAGGGCGCTTCAGGCAATTATGTGTTctgtaaaaaagaaagcagtGGCAGTTTTGTTGGTGATCTTGCCGCTCACTGCCAGGCTCATTCACCACTGGAATTCATACACGATTACGACGACAGACGTGCTACAAAGACCAGACTCTTTAAAAGTGCTGCTGGAGGAAAGGATACAAAACATGAACCCTAAAGATTTCCATATTCCTTTCCATATCAAAGACAGCCTGTCAAAGGGTCCTGCCAATAatgggtgtgtttgtgaaggCGATAAACCACGCATTCATTTCCCATTCGCTCAGTTGCTGTTTCCTCAAATATCAGCTACCCAGCTAAATGCGTCCTTCCAGGATTCAGACCTGCAAAAAGcaaagcaatacagaaaaaaagagtatCAAAGTTTCCATAAGAGGATGTATACAGCTGCAGACTCACTTATCTTAGCTGAAGCTAACAGCCCGCTTCAGTACCCTACGCAGGGTGTGGAGGTCAGACCAACAAGGACTATCCTTATTCCtggtTTAAGTCTGAACCAAATATACAGAAAGGGCCCTTATTTGGTAGATCTGATTGCTACAATGGGAACATTTAATACAGCAGCGCTGGTGGATGGAGTGCAAGTCAAAGGGGAAGGAGAGATGCATATTAGATTTCTAAGCAAATCACTGGCTTCCCTGAACAGACAGCTAGAGCTTGTTacctacacaaacacacggTTCCATCCCAACACAGCAGACATAGaatacaatataaacactCTTGTCACAATTGCCACGAAAACATTTCTACGCTATGATAAACTTCAGGATTTGATCAATAGCATTCGACGGTTCTACCCCACTATAACTATAGTGATAGCTGATGACACAGAGGAGCCTAAACCTGTATCTGGACCCTACATTGAACATTATATCATGCCCTTTGGCAAGGGCTGGTTTGCTGGCCTCAACCTGGCCGTCTCTCAGGTAGCAACCAAATATGTGCTTTGGGTGGATGATGACTTTATTTTCACCTCAAGCACCAAGCTGGAAAAAATGGTGGATATTTTGGAGAGAACAACTTTGGATCTGGTGGGCGGAGCTGTGAGAGAAGTGACGGGATACACTGCCACCTATCGACACATCATCTCCACAGACGCCGGGGATGAAGAGGGGGATTGCTTACACATAAGGACGGGGTTCCACCACGGCATGGAGGGGTTTCCCAATTGTGTAGTTGCAGATGCCGTCATCAATTTCTTCATGGCTCGCACAGAAAAGATACGACAGGTGGGCTTTGACCCGCGTCTGCCTCGGGTTGGCCATTTAGcattttttattgatGGGCTCGGCTCCCTCCACGTGGGCTCCTGTGACGATATTATCATCAGCCATGCGTCGAAGATCAAGGCGATGTTTCCATGGGGACAGTCTGAGAACGACAAGGCCTATTCAAAGTTCCGCTATACTTCCGCTGACGATACCTCTATGAGTGAATACGATCTTTATTATCTCaagaatcattttaaatgtgtcaccAGTGACTGATAATATGGAGTGGCTAAACTTCTGCAAAGCACTTTCATTGCAGACGCCCTCAAACAAAGCCAGAAAGGACATGAATAGATAGGGCTGTTACTCGTGTCTTTGTATTGATTGATGTAATTTTGTCATTCCTGAAAAGTGTTATATGACATTATGTTGAAaaccaaaggttttttttgtgcatacgTGTTAATGATGGATTCATTGacgttttgatgtttttattttgaagagagaaaataattaGACTATTTGAGTATCTTTCTTTTCATAagaataattttacattttgtagcCTATTAtgcaaactaatttttttttttaaattaacaggTTGGCTGATGCATCATCATTATGGGCATTGCGTCTTACCCtgttagctaaaaaa

Function

symbol description
b4galnt1a Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in ganglioside biosynthetic process. Predicted to act upstream of or within lipid glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 26. Orthologous to human B4GALNT1 (beta-1,4-N-acetyl-galactosaminyltransferase 1).

NR:

description
PREDICTED: beta-1,4 N-acetylgalactosaminyltransferase 1-like

GO:

id name namespace
GO:0030259 lipid glycosylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225543.1 True 2274 mRNA 0.42 11 16222809 16234574
XM_043225544.1 False 2181 mRNA 0.43 10 16222809 16234574

Neighbor

gene id symbol gene type direction distance location
sp5l sp5l,LOC107708798,LOC107681947,LOC107695752,LOC107586542,LOC107571725,LOC108276147,LOC108432429 coding downstream 30131 16189431 ~ 16192678 (-)
ankrd33aa ankrd33aa,LOC107708858,LOC107570559,LOC107563641,LOC107716213,LOC107695800,LOC108433401 coding downstream 96398 16118392 ~ 16126411 (-)
acvrl1 acvrl1,LOC107695804,LOC107708857,LOC107570535,LOC107681938 coding downstream 107525 16102408 ~ 16115284 (-)
acvr1ba LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107695803 coding downstream 123050 16083732 ~ 16099759 (-)
dnajc22 dnajc22,LOC107708801,LOC107571715,LOC107716089,LOC107563648,LOC107695753 coding downstream 199439 16021317 ~ 16023370 (-)
znf385a LOC107695795,LOC107716219,LOC107586538,LOC107570601,LOC107708851,LOC107681944 coding upstream 24501 16259075 ~ 16331672 (-)
neurod4 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding upstream 106872 16341446 ~ 16344687 (-)
c1ql4a LOC107716093,LOC107708794,LOC107681949,LOC107571784,LOC107695791,LOC107586535 coding upstream 125115 16359689 ~ 16376808 (-)
tmem107l tmem107l,tmem107,LOC107571795,LOC107695749,LOC108433473,LOC107708779 coding upstream 165231 16399805 ~ 16401705 (-)
ribc1 LOC107681983,LOC107708847,LOC107570642,LOC107695788,LOC107586532,LOC107716094 coding upstream 253652 16488226 ~ 16505803 (-)
G158284 NA non-coding downstream 104595 16117881 ~ 16118214 (-)
G158282 NA non-coding downstream 120595 16101625 ~ 16102214 (-)
G158227 NA non-coding downstream 257046 15964753 ~ 15965763 (-)
G158208 NA non-coding downstream 409882 15812281 ~ 15812927 (-)
G158198 NA non-coding downstream 433478 15728154 ~ 15789331 (-)
G158333 NA non-coding upstream 12442 16247016 ~ 16247293 (-)
G158353 NA non-coding upstream 182351 16416925 ~ 16439280 (-)
G158377 NA non-coding upstream 189390 16423964 ~ 16424362 (-)
G158383 NA non-coding upstream 198387 16432961 ~ 16433629 (-)
G158388 NA non-coding upstream 209232 16443806 ~ 16444037 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 52975 16143833 ~ 16169834 (-)
G158231 NA other downstream 213894 16008106 ~ 16008915 (-)
LOC122329227 NA other downstream 505559 15621942 ~ 15717250 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other downstream 748419 15347417 ~ 15474390 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other downstream 1174465 15047152 ~ 15048344 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other upstream 6236 16240810 ~ 16243395 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other upstream 120795 16355369 ~ 16358705 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 942051 17176625 ~ 17184385 (-)
G158609 NA other upstream 1104693 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 1179129 17413703 ~ 17422517 (-)

Expression


Co-expression Network