her9 (her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146,LOC107703052)


Basic Information

Item Value
gene id her9
gene name her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146,LOC107703052
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 13493581 ~ 13495390 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225556.1
GGCGTGTGGCAGTGGGAGATTCGACTTGCCCTCTGAAGCGCTACGCCGCACACGCTCGTGTCCTCACATGACAGCCTGCCGACTATAAGTCATATAGCTGATAAGAGGGACTCGCACTCTCTCTCGTGACCATCCCGAGATCTTGGCCGCGCTCCGCATCTAATCCCGACAGCCCgtctctgtgtttttaaaaagccgCGCAcggaatataaacatttttcttggCTTATACCGGACCCAGATTTGGTTTTTGATCATGCCAGCCGACAACATGGAGAAGCAGACCGCATCACCTATTGCTGGTGCCCCTGCCAGTGGATCTCATACTCCGGACAAACCAAAGAACGCCAGCGAGCACAGAAAGTCTTCAAAGCCGATCATGGAGAAACGCCGCAGAGCGAGAATAAACGAGAGCCTCGGACAGCTGAAGACCCTCATTCTCGATGCTCTTAAAAAAGATAGCTCCAGACACTCTAAATTGGAGAAAGCTGATATTCTCGAGATGACTGTCAAACACCTGCGCAATTTGCAGCGTGTTCAGATGACTGCGGCCCTGTCAGCGGACACAAACGTCCTCAGCAAGTATCGCGCCGGATTCAACGAGTGCATGAACGAGGTGACTCGGTTCCTCTCTACTTGCGAGGGAGTGAATACGGAGGTTAGGTCGAGACTTCTCAACCACctgtcgggttgcttgggacaAATGATGGCCATGAACTACCCTCAGCCCGCCCCAGCTCAACAGGCGCATCTGGCTCAGCCTCTTCACGTGCAGCTTCCTTCGACGCTGCCCATCAACAGCGCCTCGATGGGCCCCAAACTCAGTCCCTCAGAAGCGGTGTCTCCCAAAGTCTTTGGAGGATTCCAGCTGGTGCCAGCCACCGACGGACAGTTTGCTTTTCTTATCCCCAACCCAGCTTTCGCCTCTGCTACCACTCCGGTAATTCCCTTGTACGCAAACGCAAGCGTCCCGGTGACAGTCAACGCCAGCCCCGTCCAGGCCAGCTCGGCTCCCACGGTCGCATCTCCGGTGCAGGGAATGACCTCCTTCGCGGGCGTTTCACAGGCCGTCAGTCCCGTCGGCGTTAGCGCCGGAGCGGAGAGCAATGAACCGGTGTGGAGACCTTGGTAGACCTGCTCGTCCCGTGCGaacttttaaagcagtttttcaCGATGAAGAAAATACGTTCGGTTCCGTTTTAAGGGACTTTGTTGACCTTCTGTTGGACGAGGCGTATGTTTATTAGCTGATTCCAATATTTGGATGTCGTTAATGAAGGTGCCGTTGTTAATTCGACGGCGTAACACTTAATGTTTATaaagtacttttaaataaaagaatttagTTTTGTACAAAGTTTGTAAAAGATTGTATTATGCCAAAgctttcttgttgttttttcataagTGTTTTATGTCTGATgctgaataaatcaaaataacgAAA

Function

symbol description
her9 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of neurogenesis. Predicted to be active in nucleus. Is expressed in several structures, including axis; central nervous system; neural plate; presumptive hypochord; and pronephros. Orthologous to human HES4 (hes family bHLH transcription factor 4).

NR:

description
transcription factor HES-4-B-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09090 HESN; hairy and enhancer of split, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225556.1 True 1447 mRNA 0.51 4 13493581 13495390

Neighbor

gene id symbol gene type direction distance location
LOC122328822 LOC107703053,LOC107737553,LOC107687419,LOC107591147 coding downstream 51124 13436542 ~ 13442457 (-)
noc2l noc2l,LOC107737559,LOC107687416,LOC107716108,LOC107703058 coding downstream 91911 13376444 ~ 13401670 (-)
ca6 ca6,LOC107737562,LOC107703061,LOC107591102,LOC107687477,LOC107593430 coding downstream 364943 13123448 ~ 13128638 (-)
spsb1 spsb1,LOC107716103,LOC107687410,LOC107703063,LOC103042472,LOC107591103,LOC107737563 coding downstream 413357 13067327 ~ 13080224 (-)
LOC122328487 LOC107717767,LOC107687461 coding downstream 552696 12936321 ~ 12940885 (-)
LOC122328742 rnf223,LOC107673070,LOC107716082,LOC107591144,LOC107593948,LOC107737699,LOC107687479 coding upstream 283635 13779025 ~ 13783742 (-)
arhgef19 arhgef19,LOC107673086,LOC107737548,LOC107591090,LOC107687425,LOC107716118 coding upstream 339666 13835056 ~ 13851039 (-)
ano11 ano11,ano7l1,LOC107737547,LOC107591089,LOC107716119,LOC107593934,LOC107687426,LOC107673051 coding upstream 357076 13852466 ~ 13868569 (-)
plekhm2 plekhm2,LOC107737546,LOC107687427,LOC107716120,LOC107673107 coding upstream 373998 13869388 ~ 13881718 (-)
ddost ddost,LOC107673085,LOC107687429 coding upstream 386998 13882388 ~ 13886080 (-)
G157765 NA non-coding downstream 57720 13433755 ~ 13435861 (-)
G157365 NA non-coding downstream 371555 13121813 ~ 13122026 (-)
G157364 NA non-coding downstream 373065 13119998 ~ 13120516 (-)
G157363 NA non-coding downstream 374028 13119183 ~ 13119553 (-)
G157361 NA non-coding downstream 375413 13117380 ~ 13118168 (-)
G157799 NA non-coding upstream 246867 13742257 ~ 13747171 (-)
G157813 NA non-coding upstream 277385 13772775 ~ 13773308 (-)
G157826 NA non-coding upstream 328603 13823993 ~ 13825589 (-)
G157863 NA non-coding upstream 562447 14057837 ~ 14075937 (-)
G157874 NA non-coding upstream 646549 14141939 ~ 14142168 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other downstream 211254 13280256 ~ 13282327 (-)
G157367 NA other downstream 276173 13141078 ~ 13217408 (-)
G156985 NA other downstream 1568931 11922844 ~ 11924650 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other downstream 1635613 11763709 ~ 11857968 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other upstream 727419 14222809 ~ 14233051 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other upstream 831576 14326966 ~ 14330784 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other upstream 1074957 14570347 ~ 14589622 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other upstream 1189500 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other upstream 1551762 15047152 ~ 15048344 (-)

Expression


Co-expression Network