pfkma (pfkma,LOC107745467,LOC107681974,LOC107563631,LOC107716200,LOC107695813,LOC103038352,LOC108276103)


Basic Information

Item Value
gene id pfkma
gene name pfkma,LOC107745467,LOC107681974,LOC107563631,LOC107716200,LOC107695813,LOC103038352,LOC108276103
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15949082 ~ 15957398 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225557.1
GAGCCCCTCGCTTTGACAGACTGTTCAAACACGTCTTTCATTCGCTTTCTTTTCCAATTCCCTCTGCCACCAATTTCTGGAATACCTGAATCATGGCTAACATAAACACGGCTGGGGTCGATCCGACAAAGATGGGGCTCGGACGGGCCATTGCTGTACTGACGTCAGGTGGTGATGCCCAAGGGATGAATGCAGCTGTAAGGGCCACTGTCAGAGTCGGCATTTACACTGGAGCCAAAGTCTTCTTTGTCCATGAGGGCTACCAGGGATTGGTTGATGGAGGGGATCACATTCGTCCTGCTACATGGGAGAGTGTGTCCATGATGCTACAGCTGGGTGGCACAGTCATTGGCAGTGCCCGCTGTAAAGATTTCCAGACCAGGGAGGGgcgtttgaagggtgccttcaATCTCGTCAAACTAGGCGTCACCAACCTTTGTGTGATTGGTGGTGATGGCAGTTTGACCGGTGCCAACATTTTCCGCACTGAGTGGAGTGACTTGCTGAAAGACCTAATCAGCAAAGGTAAGATCACAAAGGAGGAGGCCAAGACTTCATCTCATCTGAATATTGTCGGTATGGTTGGATCGATCGATAATGACTTCTGCGGAACAGACATGACCATTGGCACAGACTCTGCCTTACATCGTATCATTGAGGTGGTGGACAGTATAACCACGACAGCACAAAGTCATCAACGTGCTTTCATCCTAGAGGTCATGGGAAGACACTGTGGTTACCTGGCTCTGGTTACTGCTCTTGCATGTGGTGCTGACTGGGTGTTTATTCCTGAGATGCCCCCAGATGACGGATGGGAGGATCATTTGTGTAGAAGACTCACCGAGACCAGAAAGGCAGGTTCTCGTCTGAATGTGATAATTGTGGCTGAGGGAGCAATCAACAAAGAAGGGAAACCAATCACCTGTGATCAGCTAAAAGATCTGGTGACAAAGAGGCTTGGCTATGACACTCGTGCCACTATCCTCGGACACGTGCAGAGAGGTGGCACCCCCTCAGCTTTTGACAGGGTGCTAGGCAGTAGGATGGGTGTTGAGGCTGTAATGGCTCTGCTGGAAGCCACTCCAGAAACTCCTGCCTGCGTGGTCAGTCTCTCTGGGAACCAGGCCATCAGACTGCCCCTGATGGAGTGTGTGCAAGTGaCCAAGGACGTCACTGTTGCCATGAATGAGGGTCGATTTGACGATGCTATTAAGCTTAGGGGAAGGAGTTTTGAGAATAACTGGAACACTTATAAGCTACTGGCTCATGTGCGCCCCCCAGAGACAAAGAGTAATATTAATGTGGCAATTTTAAATGTGGGGGCTCCCTGTGCTGGCATGAATGCAGCTGTTCGTGCAGCTGTCAGGATTGGCATCATCCAGGGTCACAACATGCTGGCTGTTCACGATGGCTTTGAAGGTCTGGCCGAGGAAAAGATTGAGCCCATCACCTGGAACACTGTTGGAGACTGGACAGGGAAAGGTGGCTCTGAGCTGGGAACCAAAAGAGTGTTACCTGGAAAGTACTTGGAGGAGATCAGCTTAAATATTGCCAAGTACAATATTCATGCTCTGGTCATCATAGGAGGTTTTGAGGCATTTTCAGGTGCACTGGAGATGGTTCAAGGCAGAGGGAGATATGAAGAGCTGTGTATTCCCATGGTGATCATTCCTGCTACTGTATCTAATAATGTACCTGGCTCAGACTTCAGCATCGGAGCCGACACCGCCCTTAACACCATCACCACGACTTGTGACAGGATCAAGCAGTCAGCAGCGGGAACTAAGCGGCGTGTGTTCATCATCGAGACTATGGGAGGATACTGTGGCTACCTGGCCACGATGGCTGGACTCTCTGCAGGAGCTGATGCTGCTTATATATATGAAGAGAAGTTTGGCATCCGTGACTTAGAGAGAAATGTGGAACATCTTGTAGAGAAGATGAAGACCACCGTTAAGAGAGGCTTAATTCTTAGAAATGAAAACTGCAATTCCAACTACACCACTGATTTCATCTTCAACCTGTACTCAGAGGAAGGAAATGGTGTTTTTGACTGCCGTAAGAATGTCCTTGGCCATATGCAGCAGGGTGGCACACCAACTCCTTTTGACAGAAACTTTGCTACTAAGATGGGTGCTAAGGCTGTTCTCTGGCTGACTGAGAAGCTGAAGGAGTGTTATAGACACGGGCGAATCTTTGCCAACACCCCAGACTCTGCGTGCGTGTTGGGCATGAGGAAGAGAGGACTGGTGTTACAGCCTCTGGCAGAATTAAAGGAAGAAACCGATTTTGAACACCGTATTCCGAAGAACCAGTGGTGGTTGAAGCTGAGGCCTATTATGAAGATTTTGGCAAAGTACAAGATTAGTCTAGATACCTCTGAACACGCTCTTATGGAGCATGTCATCAGCAAGAAGCCTCCAGTGCATATGTCGCTCAATAAATAATCATGAGAAAAATTGAGGACAGACAGATACAATATGAAATGACTgaattctttatttaaattatttattcatctgcctgtgtctttttctttcatcttgttTGTATCTATCGTATTTATTGTAAAGCTGTTGCAAcaggcaaattaaaataatcttacTAATAAA
>XM_043225558.1
GGAGCCCCTCGCTTTGACAGACTGTTCAAACACGTCTTTCATTCGCTTTCTTTTCCAATTCCCTCTGCCACCAATTTCTGGAATACCTGAATCATGGCTAACATAAACACGGCTGGGGTCGATCCGACAAAGATGGGGCTCGGACGGGCCATTGCTGTACTGACGTCAGGTGGTGATGCCCAAGGGATGAATGCAGCTGTAAGGGCCACTGTCAGAGTCGGCATTTACACTGGAGCCAAAGTCTTCTTTGTCCATGAGGGCTACCAGGGATTGGTTGATGGAGGGGATCACATTCGTCCTGCTACATGGGAGAGTGTGTCCATGATGCTACAGCTGGGTGGCACAGTCATTGGCAGTGCCCGCTGTAAAGATTTCCAGACCAGGGAGGGgcgtttgaagggtgccttcaATCTCGTCAAACTAGGCGTCACCAACCTTTGTGTGATTGGTGGTGATGGCAGTTTGACCGGTGCCAACATTTTCCGCACTGAGTGGAGTGACTTGCTGAAAGACCTAATCAGCAAAGGTAAGATCACAAAGGAGGAGGCCAAGACTTCATCTCATCTGAATATTGTCGGTATGGTTGGATCGATCGATAATGACTTCTGCGGAACAGACATGACCATTGGCACAGACTCTGCCTTACATCGTATCATTGAGGTGGTGGACAGTATAACCACGACAGCACAAAGTCATCAACGTGCTTTCATCCTAGAGGTCATGGGAAGACACTGTGGTTACCTGGCTCTGGTTACTGCTCTTGCATGTGGTGCTGACTGGGTGTTTATTCCTGAGATGCCCCCAGATGACGGATGGGAGGATCATTTGTGTAGAAGACTCACCGAGACCAGAAAGGCAGGTTCTCGTCTGAATGTGATAATTGTGGCTGAGGGAGCAATCAACAAAGAAGGGAAACCAATCACCTGTGATCAGCTAAAAGATCTGGTGACAAAGAGGCTTGGCTATGACACTCGTGCCACTATCCTCGGACACGTGCAGAGAGGTGGCACCCCCTCAGCTTTTGACAGGGTGCTAaCCAAGGACGTCACTGTTGCCATGAATGAGGGTCGATTTGACGATGCTATTAAGCTTAGGGGAAGGAGTTTTGAGAATAACTGGAACACTTATAAGCTACTGGCTCATGTGCGCCCCCCAGAGACAAAGAGTAATATTAATGTGGCAATTTTAAATGTGGGGGCTCCCTGTGCTGGCATGAATGCAGCTGTTCGTGCAGCTGTCAGGATTGGCATCATCCAGGGTCACAACATGCTGGCTGTTCACGATGGCTTTGAAGGTCTGGCCGAGGAAAAGATTGAGCCCATCACCTGGAACACTGTTGGAGACTGGACAGGGAAAGGTGGCTCTGAGCTGGGAACCAAAAGAGTGTTACCTGGAAAGTACTTGGAGGAGATCAGCTTAAATATTGCCAAGTACAATATTCATGCTCTGGTCATCATAGGAGGTTTTGAGGCATTTTCAGGTGCACTGGAGATGGTTCAAGGCAGAGGGAGATATGAAGAGCTGTGTATTCCCATGGTGATCATTCCTGCTACTGTATCTAATAATGTACCTGGCTCAGACTTCAGCATCGGAGCCGACACCGCCCTTAACACCATCACCACGACTTGTGACAGGATCAAGCAGTCAGCAGCGGGAACTAAGCGGCGTGTGTTCATCATCGAGACTATGGGAGGATACTGTGGCTACCTGGCCACGATGGCTGGACTCTCTGCAGGAGCTGATGCTGCTTATATATATGAAGAGAAGTTTGGCATCCGTGACTTAGAGAGAAATGTGGAACATCTTGTAGAGAAGATGAAGACCACCGTTAAGAGAGGCTTAATTCTTAGAAATGAAAACTGCAATTCCAACTACACCACTGATTTCATCTTCAACCTGTACTCAGAGGAAGGAAATGGTGTTTTTGACTGCCGTAAGAATGTCCTTGGCCATATGCAGCAGGGTGGCACACCAACTCCTTTTGACAGAAACTTTGCTACTAAGATGGGTGCTAAGGCTGTTCTCTGGCTGACTGAGAAGCTGAAGGAGTGTTATAGACACGGGCGAATCTTTGCCAACACCCCAGACTCTGCGTGCGTGTTGGGCATGAGGAAGAGAGGACTGGTGTTACAGCCTCTGGCAGAATTAAAGGAAGAAACCGATTTTGAACACCGTATTCCGAAGAACCAGTGGTGGTTGAAGCTGAGGCCTATTATGAAGATTTTGGCAAAGTACAAGATTAGTCTAGATACCTCTGAACACGCTCTTATGGAGCATGTCATCAGCAAGAAGCCTCCAGTGCATATGTCGCTCAATAAATAATCATGAGAAAAATTGAGGACAGACAGATACAATATGAAATGACTgaattctttatttaaattatttattcatctgcctgtgtctttttctttcatcttgttTGTATCTATCGTATTTATTGTAAAGCTGTTGCAAcaggcaaattaaaataatcttacTAATAAA

Function

symbol description
pfkma Predicted to enable several functions, including 6-phosphofructokinase activity; anion binding activity; and identical protein binding activity. Predicted to be involved in canonical glycolysis; fructose 1,6-bisphosphate metabolic process; and fructose 6-phosphate metabolic process. Predicted to act upstream of or within glycolytic process. Predicted to be located in cytoplasm. Predicted to be part of 6-phosphofructokinase complex. Predicted to be active in membrane. Is expressed in male organism; musculature system; myotome; and pectoral fin musculature. Human ortholog(s) of this gene implicated in glycogen storage disease VII. Orthologous to human PFKM (phosphofructokinase, muscle).

NR:

description
PREDICTED: ATP-dependent 6-phosphofructokinase, muscle type-like

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0006096 glycolytic process biological_process
GO:0016310 phosphorylation biological_process
GO:0006002 fructose 6-phosphate metabolic process biological_process
GO:0005945 6-phosphofructokinase complex cellular_component
GO:0003872 6-phosphofructokinase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K00850 pfkA, PFK; 6-phosphofructokinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225557.1 True 2612 mRNA 0.48 22 15949082 15957397
XM_043225558.1 False 2487 mRNA 0.47 21 15949082 15957398

Neighbor

gene id symbol gene type direction distance location
LOC122328789 LOC107681987,LOC107745464,LOC107563630,LOC107695814 coding downstream 1019 15935353 ~ 15948063 (-)
asb8 asb8,LOC107745463,LOC107681993,LOC107570421,LOC107563629,LOC107695815 coding downstream 14757 15929873 ~ 15934325 (-)
atf7a atf7a,LOC107563644,LOC107681998,LOC107716199,LOC107745462,LOC107570410,LOC107695816 coding downstream 20279 15906598 ~ 15928803 (-)
dip2ba dip2ba,LOC107745461,LOC107687534,LOC107563628,LOC107570362,LOC107695817,LOC107716198 coding downstream 43113 15868340 ~ 15905969 (-)
scn8aa scn8aa,LOC107570345,LOC107745459,LOC107695818,LOC107716197,LOC107563626 coding downstream 88259 15814709 ~ 15860823 (-)
LOC122328386 LOC107745468,LOC107681975,LOC107570394,LOC107716202 coding upstream 498 15957896 ~ 15964419 (-)
phf8 phf8,LOC107570386,LOC107745465,LOC107681973,LOC107563633,LOC107695732 coding upstream 9023 15966421 ~ 15975709 (-)
arf3a arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 coding upstream 21218 15978616 ~ 15983169 (-)
wnt10b wnt10b,LOC107570475,LOC107745470,LOC107681943,LOC107716203,LOC107695810,LOC107563634 coding upstream 27507 15984905 ~ 15991565 (-)
ikzf4 si:dkey-166n8.9,ikzf4,LOC107681936,LOC107695809,LOC107570458,LOC107563647 coding upstream 52322 16009720 ~ 16019647 (-)
G158208 NA non-coding downstream 136155 15812281 ~ 15812927 (-)
G158198 NA non-coding downstream 159751 15728154 ~ 15789331 (-)
G158188 NA non-coding downstream 267210 15680886 ~ 15681872 (-)
G158174 LOC107571455 non-coding downstream 342002 15603848 ~ 15607080 (-)
G158024 si:ch73-206d17.1,LOC107571682,LOC107726152,LOC107695830 non-coding downstream 471313 15476487 ~ 15477769 (-)
G158227 NA non-coding upstream 7355 15964753 ~ 15965763 (-)
G158282 NA non-coding upstream 144227 16101625 ~ 16102214 (-)
G158284 NA non-coding upstream 160483 16117881 ~ 16118214 (-)
G158333 NA non-coding upstream 289618 16247016 ~ 16247293 (-)
G158353 NA non-coding upstream 459527 16416925 ~ 16439280 (-)
LOC122329227 NA other downstream 231832 15621942 ~ 15717250 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other downstream 474692 15347417 ~ 15474390 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other downstream 647400 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other downstream 900738 15047152 ~ 15048344 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other downstream 1359460 14570347 ~ 14589622 (-)
G158231 NA other upstream 50708 16008106 ~ 16008915 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other upstream 186435 16143833 ~ 16169834 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other upstream 283412 16240810 ~ 16243395 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other upstream 397971 16355369 ~ 16358705 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 1219227 17176625 ~ 17184385 (-)

Expression


Co-expression Network