sox18 (sox18,LOC107727030,LOC107681403,LOC107705673,LOC107551552,LOC107666636,LOC107579252)


Basic Information

Item Value
gene id sox18
gene name sox18,LOC107727030,LOC107681403,LOC107705673,LOC107551552,LOC107666636,LOC107579252
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7088177 ~ 7091244 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225559.1
AAAACTCACTACAACTTTCAAACTCAGCACAAGAACTATATACCGTCTGGAGGGCAGGAGTTACAAAACACTAACATCTGTGGGATTTTATACTTTGTACTCCGAAACATCCGAAAAGAAAGGGTgcagctctttttctttcttttttacgaTTTGTTTCATTTGGGTTACTGGTCAGTCTGTATTTAAAGTAGCTTAAAGTAGCTCGGTGTTGCTTCTATCCAAAGACAACAGCGTGCTTTAACCGTGGTGGTCTTGCTGGAATGAATATATCTGAGTCTAGTTGCTGTCAAGAGGCCAGTTCTCAGCCCAGCCAGGTTGCGGAGCGTGGGACATGGGGTGCCTCTTCCAGCACTCCGGGCCTGACGGGACATGGTTTTGACCACAGCCGGACCACAGAGCTGGCGCCGGTGCCCGGCTCTGGAACGCGGACAGGGTCCCGAAGCGGAGCGGAGGCCAGGACGGGGAGCCCGGACTCAACCCGCACTGGAGCTCTGACCCTAGGCTCCGGAGAGGGGAAATCAGGGGGAGAGTCCAGGATCAGGAGGCCCATGAATGCCTTCATGGTGTGGGCTAAAGACGAGCGCAAACGTCTGGCACTCCAGAACCCAGACCTGCATAACGCCGTGCTCAGTAAGATGCTGGGTCAATCCTGGAAGGCTCTAAGCACCCTAGACAAGCGTCCGTTTGTGGAGGAAGCCGAACGACTGCGTTTGCAGCACCTCCAGGATCACCCAAACTACAAATACCGTCCTCGCCGCAAGAAACAACCCAAGAAGATGAAACGAGTGGAACCGGGTTTGCTCCTCCAAGGCCTAGCTGGCGGCCCTGGACCAGGAGATGCCTATTCGCCGCATCGCCATGGCCATCATCTGCTGCCTCCTCTGGGACACTTCCGAGACCTCCACCCCTCTGGAGCCTCGGAGCTGGAGAGTTACGGCCTGCCGACGCCAGAGATGTCACCGCTTGACGTGCTGGAAGAGGGAGGCGGAGattctgtgttttttccccctcacatGCAGGAAGATGTGGGTCTGGGTTCGTGGATAAACTACCACCAGCATCCAAACCATCAGACTGGCCACCACCCTCACCACAACTCCCATAACCTCCAGCATTCCCACCCACACCTCAACCAGAAGTCTCCGCTGGCCTGCCTCCCGCTACAGGAGAAATGCCTGCTCGTGGAGTCCACGAACCCTAACAGTCTCTACCCCAACATGAGCCTCCCAGAATCCTCCAAGGCTCCTCACACCCCCACACCTGCAGGCTATTACGGTCAGATATACGGGAGCAGTCAGCCCCAGCCTGCCTTCACCTCTCATCTGGGCCAGCTGTCTCCTCCGCCCGAGACCTCGGCGGTTGCTCAGGTCGCTCCGCCCTCTCTGGACTCTGTGGACCAGCTGGGACCCTCGGCCGAGTTCTGGGGCGAAGTGGACAGGATTGAGTTCGACCAATACCTGAGCGCGAGCAGGACTCGATTGAGCAGGAACACCCCTTGCGAGGAGAGCAGCGCTTTGATATCAGCCCTGTCCGACGCCAGCAGCGCCGTTTACTACAGCGCATGCATTACGGGATAAAACTGCTTCTCCGCGCAGTCCTGAAGTCTGGTGCACATATGGCTTTTTTTTGAGGCTCAGAACTTTTTGATTTATTCGAGTTACCTTCTTCAGGGAATCATCTTGCCCGGTTTCACGAATCACTGGAGGTTACTGAACTCTATACAGGATGGTTCTCACCGTATAGACTTCACTAAATTGCATTTCACAGTATGACTAGTCATTTCTGGTCTTGATAACCTGTACTTTCTGAGACTGTGGCCGATTTAACCAATAATTTTGCTGACTCCATCCAGCTACTGTATGCTTACGGTCTCAAATGAGGGTACTGGGGCGTGGAAGTCAagaatgtgaatatttttgcaatacatatatatatatatatatatat

Function

symbol description
sox18 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within artery development; lymphangiogenesis; and vasculogenesis. Predicted to be located in nucleus. Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; immature eye; intermediate cell mass of mesoderm; and mesoderm. Human ortholog(s) of this gene implicated in hypotrichosis-lymphedema-telangiectasia syndrome and hypotrichosis-lymphedema-telangiectasia-renal defect syndrome. Orthologous to human SOX18 (SRY-box transcription factor 18).

NR:

description
PREDICTED: transcription factor Sox-18B-like

GO: NA

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225559.1 True 1950 mRNA 0.53 3 7088177 7091244

Neighbor

gene id symbol gene type direction distance location
LOC122328474 LOC107551551,LOC107666518,LOC107727032,LOC107705685,LOC107681407,LOC107559858 coding downstream 27926 7008897 ~ 7060251 (-)
LOC122328429 xkr7,LOC107551551,LOC107666518,LOC107681407,LOC107559858,LOC107705685,LOC107727032,LOC108435212 coding downstream 161761 6871977 ~ 6926416 (-)
cables2b cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996 coding downstream 230712 6838807 ~ 6857465 (-)
acss2 acss2,LOC107681393,LOC107551550,LOC107666475,LOC107559859 coding downstream 268334 6805369 ~ 6819843 (-)
osbpl2b osbpl2,osbpl2b,LOC107727008,LOC107681391,LOC107666451,LOC107705692 coding downstream 366607 6713359 ~ 6721570 (-)
rgs19 rgs19,LOC107727031,LOC107666537,LOC107681401,LOC107551553,LOC107705684 coding upstream 219326 7310570 ~ 7342699 (-)
npbwr2b npbwr2,LOC107558229,LOC107727007,LOC571123,LOC107559472,LOC107705671,LOC108410549,LOC107666655 coding upstream 430820 7522064 ~ 7525501 (-)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362 coding upstream 683057 7774301 ~ 7782717 (-)
LOC122328356 pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856 coding upstream 693061 7784305 ~ 7788287 (-)
LOC122328712 kif3b,LOC107593268,LOC107721442,LOC107690993,LOC107697206,LOC107719402,LOC107690851,LOC107559485 coding upstream 730878 7822122 ~ 7832584 (-)
G155586 NA non-coding downstream 20353 6929686 ~ 7067824 (-)
G155578 NA non-coding downstream 249611 6837129 ~ 6838566 (-)
G155508 NA non-coding downstream 252588 6835375 ~ 6835589 (-)
LOC122328996 NA non-coding downstream 283258 6794103 ~ 6804919 (-)
G155443 NA non-coding downstream 462909 6624419 ~ 6625268 (-)
G155597 NA non-coding upstream 9064 7100308 ~ 7106154 (-)
G155605 NA non-coding upstream 29159 7120403 ~ 7301136 (-)
G155606 NA non-coding upstream 31685 7122929 ~ 7124586 (-)
G155607 NA non-coding upstream 33584 7124828 ~ 7305564 (-)
G155620 NA non-coding upstream 309737 7400981 ~ 7401192 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other downstream 84654 6994167 ~ 7003523 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other downstream 106216 6964742 ~ 6981961 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other downstream 220877 6858007 ~ 6867300 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other downstream 265145 6766608 ~ 6823032 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other downstream 356291 6730851 ~ 6731886 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other upstream 185204 7276448 ~ 7278323 (-)
G155807 NA other upstream 1454150 8545394 ~ 8551977 (-)
G155827 NA other upstream 1534514 8625758 ~ 8628391 (-)
c23h1orf127 LOC107708840,LOC107570680 other upstream 1821818 8913062 ~ 8919770 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other upstream 1830320 8921564 ~ 8926751 (-)

Expression


Co-expression Network