gata5 (gata5,LOC107681871,LOC107707745,LOC107747495,LOC107559469,LOC107690861)


Basic Information

Item Value
gene id gata5
gene name gata5,LOC107681871,LOC107707745,LOC107747495,LOC107559469,LOC107690861
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 7978891 ~ 7985474 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225560.1
TAAAGTAGAGAGCAAATCAGAGGACAGTTATATTGGGCATTATCTGCAGCAGCGGCTATCTCCAGATACAGGCAAGGCACGGGGACGCGTCCGAACGCGGAGAGGACGGTTGCggggtttttttccccacattgtCGCAGACGCGTTCAAAGTTTGAATTGTGGGCTGAAATCGAGAAGAAAGAAGAGGCTGGAGCTTCCACGGCGATATTCGCTCAGGTCACTTGGAAAAGAGGGTTCCTGACTTTATCGCTGCCCGTCCTTATCTGgagaaattgcttttttttgagGCCACTGCTCACCGGACCGTCGCATTTGGAGATTTTGGACTTCACTTTTAAGATTTCAGAACTTGAACGGATAGCTTAGTCGTCGGATACACCATGTATTCGAGCCTGGCTCTATCTTCCAACCCGTCCCCCTACGCGCACGATTCCGGGAACTACATCCACCCGTCCGCCAGCTCACCTGTGTACGTCCCCACCACCCGCGTCCCCGCCATGCTCCAGACCCTGCCCTACCTCCAGACGTGCGAGTCCTCGCATCAAGCCCACGGGCTCGGCAGCCACCACGCCTGGCCGCAGACCGGCGCGGAGAATTCCTCCTTCAACCCGGGCAGCCCTCACCCTCCTCCCGGTTTCTCTTATTCGCACAGCCCGCCGGTGAGCAGCAGCACCGGCAGGGACGCCGCGTACCAGAACCCGCTGGTGTTGGGTAACGGCGGCCGGGCGGATCAGTACGGAAGCGCCCTGGTGCGCTCCGTCGGCGGCTCATACTCCAGTCCGTACGCGGCCTACATGAGCCCGGAGATGGCCACCTCATGGACGCCAGGGCCCTTCGACGGCGGCATGATCGGTCTCCAGGGCCGCCAGGGAACTCTGCCGGGGAGGAGGTCCAGTTTAGACATGCTGGAAGAGCTGCCGGGTGAAGGGCGGGAGTGTGTGAACTGCGGCTCCATCTCGACGCCGCTGTGGAGGAGAGACGGTACCGGACACTACCTGTGCAACGCCTGCGGCCTCTATCACAAGATGAACGGCATCAATCGACCCCTCATCAAACCACAGAAACGCCTGCAAAGCACATCGCGACGAGCAGGCCTGTGCTGCACGAACTGTCACACCAGTACGACCACGCTGTGGAGGAGAAACGCGGAGGGAGAGCCCGTCTGCAACGCCTGCGGTCTCTACATGAAGCTCCACGGGgTACCGAGGCCGTTGGCgatgaagaaagaaagcatCCAGACGAGAAAACGCAAACCAAAGATGCCCAAAACCAAAGCATCCTCAGGGTCAACAGTGTCTGGCGCTACGTCTCCCACTTCATTACCTGCTTCAGAGAACGCCTCTACAATAAAGAGCGAACCCAATATCGCAGCTTCGCCATACGCAGGCCAAACCGTTGTCTCGGTCACGCAAGGATCCACGCAGTTGGACAGTACCAGTTCGGGACACGTGGACATCAAATACGAAGACTACACATACACCCCGACGTCGATCGCCCCGCAGAATTCCTGGTGTGCGCTGTCCCAAGCGTGATGTGAGACCTACTACCTTTTCTAAACCCTCTccagtgcattctgggagaaAAGACTTTTAACGAGATCTACCTAATAGAACCTTTACACAAATGTAGAGAGACGGAGCTTAGGAAGGCAAGAGACTGACTGTAATTTGTGCTGCTTTGCCTCGTTGATTTATCGTGGCATATCCGTCACGGGCCAATTGTGCCAAAATACGGAGGGCCACAAGCAGCGACTCGGCAACAGTTCTCAAGTTCCTTAAGCAATGATCGGGaggacaaaaaaacatgctttttatggCTTCTGAACATGTTTCACGGCTTAGATGTTAATGATTTACTTTTAAGATACATTATTTATGTTGAGATAAGAATGGTGGAGGCACACAAGTCTCTCCCATAATTTTCCTTATCCTTCAGGGAATGCGTCTTTACGGTCGTTATGACTTTAGATCGCATACTTTCCCTGAATGAGGCTTTTAAAAGTTTCATTGTTGTCTTTGCTGATTCCAGACACTTTTAATGCTGTATTGTATTCCTCTGATGATCCAAAGTGCAATGATCCTCGCTTTTCAGCTAATTTTGAAAAGGggcacatttatattaattgttcAAAATTATGTGTTGCGTTTTGTCTGAATATGTTAACCtaattttatttgctgtattttgttgATATATATTGGAATTAtatcattgttttattgcatataaaattGCCAAACGTC

Function

symbol description
gata5 Enables DNA binding activity and DNA-binding transcription factor activity. Acts upstream of with a negative effect on gene expression. Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ development; and post-embryonic foregut morphogenesis. Located in nucleus. Is expressed in several structures, including DEL; cardiovascular system; digestive system; mesoderm; and presumptive structure. Orthologous to human GATA5 (GATA binding protein 5).

NR:

description
transcription factor GATA-5-like

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0001706 endoderm formation biological_process
GO:0055007 cardiac muscle cell differentiation biological_process
GO:0031016 pancreas development biological_process
GO:0048538 thymus development biological_process
GO:0060972 left/right pattern formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0048618 post-embryonic foregut morphogenesis biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0001889 liver development biological_process
GO:0030878 thyroid gland development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K17896 GATA5; GATA-binding protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225560.1 True 2245 mRNA 0.52 7 7978891 7985474

Neighbor

gene id symbol gene type direction distance location
LOC122329207 hck,LOC107681869,LOC107707747,LOC107690859,LOC107747493 coding downstream 23896 7932443 ~ 7954995 (-)
tm9sf4 tm9sf4,LOC107681873,LOC107690854 coding downstream 46787 7922253 ~ 7932104 (-)
LOC122328942 pofut1,LOC107707748,LOC107681402,LOC107558235,LOC107747492,LOC107690856 coding downstream 112504 7862203 ~ 7866387 (-)
LOC122328943 kif3b,LOC107690851,LOC107558233,LOC107559485,LOC107681362 coding downstream 117537 7854304 ~ 7861354 (-)
LOC122328712 kif3b,LOC107593268,LOC107721442,LOC107690993,LOC107697206,LOC107719402,LOC107690851,LOC107559485 coding downstream 146307 7822122 ~ 7832584 (-)
trnai-uau_5 NA coding upstream 200423 8185897 ~ 8185988 (-)
trnai-uau_6 NA coding upstream 200721 8186195 ~ 8186288 (-)
trnai-uau_7 NA coding upstream 201343 8186817 ~ 8186910 (-)
trnai-uau_8 NA coding upstream 201643 8187117 ~ 8187210 (-)
trnai-uau_9 NA coding upstream 203339 8188813 ~ 8188906 (-)
G155698 NA non-coding downstream 5566 7973103 ~ 7973325 (-)
G155669 LOC107747485,LOC107707759,LOC107559486,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 non-coding downstream 126640 7819746 ~ 7852251 (-)
G155684 NA non-coding downstream 142353 7834562 ~ 7836538 (-)
G155670 LOC102294427,LOC107690852,LOC107681385,LOC108440950,LOC107559486,LOC100536777,LOC107747485 non-coding downstream 161520 7766248 ~ 7817371 (-)
G155629 NA non-coding downstream 494686 7483923 ~ 7484205 (-)
G155737 NA non-coding upstream 191225 8176699 ~ 8177518 (-)
G155759 NA non-coding upstream 321805 8307279 ~ 8382607 (-)
G155803 NA non-coding upstream 540928 8526402 ~ 8532927 (-)
G155825 NA non-coding upstream 639452 8624926 ~ 8625642 (-)
G155933 NA non-coding upstream 643225 8628699 ~ 8629103 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other downstream 700568 7276448 ~ 7278323 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other downstream 975368 6994167 ~ 7003523 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other downstream 996930 6964742 ~ 6981961 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other downstream 1111591 6858007 ~ 6867300 (-)
rps21 rps21,LOC107666483,LOC107681394,LOC106572905 other downstream 1155859 6766608 ~ 6823032 (-)
G155807 NA other upstream 559920 8545394 ~ 8551977 (-)
G155827 NA other upstream 640284 8625758 ~ 8628391 (-)
c23h1orf127 LOC107708840,LOC107570680 other upstream 927588 8913062 ~ 8919770 (-)
sst6 LOC107681964,LOC107571825,LOC107695779,LOC107570713,LOC107681961 other upstream 936090 8921564 ~ 8926751 (-)
ctnnbip1 ctnnbip1 other upstream 1094058 9079532 ~ 9097302 (-)

Expression


Co-expression Network