LOC122328377


Basic Information

Item Value
gene id LOC122328377
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17799842 ~ 17844102 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247788.1
agacAGCAAATAGTAGACATGAGAGATAATTGCAGAGCTTGCAGCTATTTTTTATGCGTTCTCCGTATTTACAGAAAAAACGGTCTTGAATTTTCATCCAAAAACTAAAGGATGCGAGCAGTCTCCATCATCAGGACTTAATGTTTTGCCATGATCCGTGATGTGATTGGAGAACCACCTCCAAGATTACCGGACAAAGGCATCAGGTGAATAATGATTCGTCCCGGCACAGGAACGACTCTGACAATAACCTCCTGATTCCTATCGGCCCTGTGTCCGGCAGCATTCCATCACTCTCCAACGATATCGATCTGGCCGTCTGCCTCATCAATGGACTCGTATGACTGAGGACAACCGTGGGCCGACGTGCTGCAGCATACGgacaaaatgcatttcatcTCCAGAGCACTTGGTTTTTCTGTCTGGTTTCGAGGCCGTTTCAAGTTCGATTAGGGGAGTGCTGGGGTAACACTGCAGTCTAATTCTTGAGGCACCTTCCATAAAAGCCAAATATAGTTCCATCGATCCATTGACGAAACCTCGAGACGGACGTGTAGACGCCGGGGTACTGGGCATCAGCGCAGCCGTTTCCCCAGGAGACGATCCCATAGACACGGCCCTCACACACCAGCGGTCCTCCGGAATCACCCtgcgcaaaaaaaaacagtcatattaATGTGATTTTGGACAGGGAGGTCAGTGGAGAGCGATCAAACGAATACGCATCATGTTCTCTGTGATGTTTCCATTAAAAGAGTCCGTGCCGTTACACACTGCGGTGGACACGATGGGCAGTTTGACCGTGTGCAGGGTCTCGGGGATTCCTCCCGTCGGAGTGGTGAAGCCCCAGCCGGACACGGTGCACAGGCGACCCACGGCCACCACAGCGTCCTGCCGAGTGTGCTGCGGTCAAGATCCAGTATTTGTTAATCAAGGTCCCTCCACAGAAGTGCTGGCCCGTGGCGGTCTGAATAGACACGATGTACTTGATGGAGTACGGCGCTGGGACGTATCCACCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247788.1 True 1021 lncRNA 0.51 5 17799842 17844102

Neighbor

gene id symbol gene type direction distance location
LOC122328416 LOC107599143,LOC107697854,LOC107751854,LOC107714945,LOC107563142,LOC107664148 coding downstream 3412 17788980 ~ 17796430 (-)
LOC122328417 LOC107563141,LOC107563138,LOC107664227,LOC107751839,LOC107599502,LOC107714980,LOC107664226,LOC107563140 coding downstream 10912 17787597 ~ 17788930 (-)
LOC122328575 LOC107714980,LOC107664226,LOC107563140,LOC107664227,LOC107714944 coding downstream 13600 17784715 ~ 17786242 (-)
pink1 pink1,LOC107714979,LOC107697909,LOC107751829 coding downstream 15718 17778474 ~ 17784124 (-)
LOC122328974 agmat,LOC107714919,LOC102790280 coding downstream 21922 17773405 ~ 17777920 (-)
vwa5b1 vwa5b1,LOC107706959,LOC107714920,LOC107664114,LOC107563127 coding upstream 34965 17879067 ~ 17914537 (-)
ubxn10 LOC107714950,LOC107664163,LOC107706981,LOC107563148,LOC107697872,LOC107599688 coding upstream 78485 17922587 ~ 17924503 (-)
LOC122329192 cptp,LOC107706969,LOC107697856,LOC107664144,LOC107599683,LOC107594044 coding upstream 80537 17924639 ~ 17926204 (-)
LOC122329235 LOC107714952,LOC107664261,LOC107594045,LOC107599127,LOC107706987,LOC107697913 coding upstream 91472 17935574 ~ 17937579 (-)
tspan31 tspan31,tsn31,LOC107599072,LOC107593953 coding upstream 221168 18065270 ~ 18070963 (-)
G158706 LOC107599375,LOC107715025,LOC107671876,LOC107594031,LOC104946192 non-coding downstream 51340 17746530 ~ 17748502 (-)
G158632 NA non-coding downstream 404420 17394021 ~ 17395422 (-)
G158628 NA non-coding downstream 413288 17383342 ~ 17386554 (-)
G158608 dazap2,LOC107715036,LOC107594003,LOC107671873,LOC107756418,LOC107598568 non-coding downstream 460923 17311328 ~ 17338919 (-)
G158605 NA non-coding downstream 508299 17289971 ~ 17291543 (-)
G158774 NA non-coding upstream 99823 17943925 ~ 17944160 (-)
G158887 NA non-coding upstream 155731 17999833 ~ 18001690 (-)
G158892 NA non-coding upstream 168024 18012126 ~ 18015877 (-)
G158882 NA non-coding upstream 197808 18041910 ~ 18043476 (-)
G158947 NA non-coding upstream 348868 18192970 ~ 18193557 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 377325 17413703 ~ 17422517 (-)
G158609 NA other downstream 456457 17339267 ~ 17343385 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other downstream 615457 17176625 ~ 17184385 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 1441137 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 1556447 16240810 ~ 16243395 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 201824 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 387541 18231643 ~ 18235536 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 451944 18296046 ~ 18302575 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other upstream 498232 18342334 ~ 18350347 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 903289 18747391 ~ 18754712 (-)

Expression


Co-expression Network