LOC122328412 (LOC107678070,LOC107571224,LOC107571225,LOC107678080,LOC107705859,LOC107738794)


Basic Information

Item Value
gene id LOC122328412
gene name LOC107678070,LOC107571224,LOC107571225,LOC107678080,LOC107705859,LOC107738794
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1609160 ~ 1610175 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247792.1
GATGGCTACTTTTCAAGTGGTTCTAGTCTCCAACGTCCATCGCTCTTTTATCCTGCTCAACTATGGGaacatttcagaaacagaaCAAATTTGGCAGGCTGGATACAGCACAGAGGATTCTGTCAGTTCTTTCACAAGTCCAGCAACCAGTGCCCCACAGCTCTCTTCTAGCAGCAATATCAATGTGAATGGCCGCTGCTCGTTCCATGTTGACGGCTCACCAAACTTGCCAACTAATCTCCTGCCTTCTGGGAATAAAGACATAGTGAACCCCCCTGCTGAAGATGGAAGCTCTGGTGTCATTTACTTGCAGCAGCCTTTCAAATACTTTGGACGCACATACAATCAGATCTTTGTGAACAACAATGGCTATCTAACGTTTACTGAGGCACTGACTGCCTCCAGACCCTTTCTGGATTCTGCAAGAGACATCATTGCTCCTCTTTGGACTCGCCTTGACAATAGACACGGTGGAACTATCTCCTATAGAGAGGACACAAGCAGCGCTGTACTAGCACAAGTCACTGCAGATGTTAAGCAATACTTCCCTAACATACCTTTTGCTGCTACTTCAGCTTTCGTCGCTACCTGGGACAGTGTTCCAT

Function

NR:

description
PREDICTED: alpha-tectorin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247792.1 True 605 lncRNA 0.47 4 1609160 1610175

Neighbor

gene id symbol gene type direction distance location
LOC122329159 LOC107678070,LOC107571224,LOC107705859,LOC107571225,LOC107678080,LOC107738794 coding downstream 529 1606277 ~ 1608631 (-)
LOC122329158 NA coding downstream 51173 1554262 ~ 1557987 (-)
LOC122328511 LOC107690110,LOC107567958,LOC107724207,LOC107578799 coding downstream 115132 1482712 ~ 1494028 (-)
LOC122329157 NA coding downstream 207370 1395429 ~ 1401790 (-)
LOC122328434 NA coding downstream 237686 1362002 ~ 1371474 (-)
LOC122329161 LOC107678070,LOC107571224,LOC107705859 coding upstream 94 1610269 ~ 1613006 (-)
LOC122329162 LOC107678070,LOC107571224,LOC107705859,LOC107571225,LOC107678080,LOC107738794 coding upstream 7412 1617587 ~ 1619011 (-)
spata2 spata2,LOC107703616,LOC107562628,LOC107713568,LOC107680738 coding upstream 35812 1645987 ~ 1651285 (-)
dhx35 dhx35,zgc:158828,LOC102790768 coding upstream 313012 1923187 ~ 1934838 (-)
rab5if c23h20orf24,LOC107680731,LOC107713559,LOC107703615,LOC107557487,LOC107562621,LOC107747730,LOC103366025 coding upstream 325949 1936124 ~ 1939390 (-)
LOC122328398 LOC107678070 non-coding downstream 2939 1604612 ~ 1606221 (-)
LOC122328609 NA non-coding downstream 14951 1593612 ~ 1594209 (-)
LOC122328606 NA non-coding downstream 188706 1419857 ~ 1420454 (-)
G153984 LOC107727750,LOC107691341,LOC107566873 non-coding downstream 216025 1389362 ~ 1393135 (-)
G153967 NA non-coding downstream 401573 1206700 ~ 1207587 (-)
LOC122328435 LOC107738794,LOC107571225,LOC107678080,LOC107678070 non-coding upstream 3033 1613208 ~ 1614708 (-)
LOC122328558 LOC107738794 non-coding upstream 6311 1616486 ~ 1617477 (-)
LOC122328550 LOC107678080,LOC107738794,LOC107571225 non-coding upstream 9849 1620024 ~ 1620549 (-)
LOC122328433 LOC107738794,LOC107678070 non-coding upstream 11504 1621679 ~ 1623124 (-)
LOC122328490 LOC107678070,LOC107571224,LOC107705859,LOC107571225,LOC107678080 non-coding upstream 13251 1623426 ~ 1624271 (-)
smim29 si:dkey-226k3.4,LOC107690111,LOC107567962,LOC107724208,LOC107738791,LOC107678078,LOC107571229 other downstream 96831 1507698 ~ 1512329 (-)
l3mbtl1 l3mbtl1,LOC107736954,LOC107564793,LOC107684891,LOC107675169 other downstream 544386 1053377 ~ 1064774 (-)
vgll4a LOC107675174,LOC107736947,LOC107713758,LOC107684880,LOC107555803,LOC107574679 other downstream 726976 865477 ~ 882184 (-)
ndnl2 ndnl2,LOC107736943,LOC107568481,LOC107714263,LOC107660884 other downstream 823281 779085 ~ 785879 (-)
LOC122328833 LOC107669693 other upstream 492535 2102710 ~ 2116883 (-)
LOC122328838 LOC107680059,LOC107748448,LOC107565963 other upstream 1159307 2769482 ~ 2839047 (-)
LOC122328849 LOC107718007,LOC107687303,LOC107571802,LOC107748430,LOC107680054,LOC107565975 other upstream 1177121 2787296 ~ 2798533 (-)
si:zfos-905g2.1 si:zfos-905g2.1 other upstream 1259443 2869618 ~ 2874758 (-)
G154446 NA other upstream 1314873 2925048 ~ 2957272 (-)

Expression


Co-expression Network