LOC122328606


Basic Information

Item Value
gene id LOC122328606
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 1419857 ~ 1420454 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247811.1
CTACTTTCCAAGTGGTTCTAGTCTCCAGTGTGCATAGCTCTTTCGTCCTGCTGAACTAtggaaacatttcagaaacGGAACAAATTTGGCAGGCTGGTTACAGCACAGTGGATTCTGTCAGTTCTTTTACAAGTCCAGCAGCCAGTGCCCCACAGCTCTCTTCTATCAGCAATATTAATGTGAATGGCAGCTGCTCTTTTTATGTTGATGGCTCACCGAACTTACCAACTAATTTCCTACCTCCTGTGGATGAAGACATAGTGAATCCCCCTGCTGAAGATGGAAGCTCTGGTGTCATTTTCTTGCAGCAGCCTTTCAAATACTTTGGACGCACATACAATCAGATCGCCG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0031497 chromatin assembly biological_process
GO:0048468 cell development biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0071103 DNA conformation change biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247811.1 True 351 lncRNA 0.45 3 1419857 1420454

Neighbor

gene id symbol gene type direction distance location
LOC122329157 NA coding downstream 18067 1395429 ~ 1401790 (-)
LOC122328434 NA coding downstream 48383 1362002 ~ 1371474 (-)
LOC122329156 nup210,LOC107675171,LOC107684885,LOC107555788,LOC107564796,LOC107736952 coding downstream 75291 1282121 ~ 1344566 (-)
b4galt5 b4galt5,LOC107736963,LOC107684873,LOC107656676,LOC107566184,LOC107725076 coding downstream 235191 1165023 ~ 1184666 (-)
zgc:113278 zgc:113278,LOC107714267,LOC107555798,LOC107736961,LOC107656677,LOC107684897,LOC108427771,LOC105906438,LOC107564801 coding downstream 324419 1087192 ~ 1095438 (-)
LOC122328511 LOC107690110,LOC107567958,LOC107724207,LOC107578799 coding upstream 62258 1482712 ~ 1494028 (-)
LOC122329158 NA coding upstream 133808 1554262 ~ 1557987 (-)
LOC122329159 LOC107678070,LOC107571224,LOC107705859,LOC107571225,LOC107678080,LOC107738794 coding upstream 185823 1606277 ~ 1608631 (-)
LOC122329161 LOC107678070,LOC107571224,LOC107705859 coding upstream 189815 1610269 ~ 1613006 (-)
LOC122329162 LOC107678070,LOC107571224,LOC107705859,LOC107571225,LOC107678080,LOC107738794 coding upstream 197133 1617587 ~ 1619011 (-)
G153984 LOC107727750,LOC107691341,LOC107566873 non-coding downstream 26722 1389362 ~ 1393135 (-)
G153967 NA non-coding downstream 212270 1206700 ~ 1207587 (-)
G153966 NA non-coding downstream 213255 1205479 ~ 1206602 (-)
LOC122328476 NA non-coding downstream 456280 960274 ~ 963577 (-)
G153893 cnbp non-coding downstream 520091 841719 ~ 899766 (-)
LOC122328609 NA non-coding upstream 173158 1593612 ~ 1594209 (-)
LOC122328398 LOC107678070 non-coding upstream 184158 1604612 ~ 1606221 (-)
LOC122328412 LOC107678070,LOC107571224,LOC107571225,LOC107678080,LOC107705859,LOC107738794 non-coding upstream 188706 1609160 ~ 1610175 (-)
LOC122328435 LOC107738794,LOC107571225,LOC107678080,LOC107678070 non-coding upstream 192754 1613208 ~ 1614708 (-)
LOC122328558 LOC107738794 non-coding upstream 196032 1616486 ~ 1617477 (-)
l3mbtl1 l3mbtl1,LOC107736954,LOC107564793,LOC107684891,LOC107675169 other downstream 355083 1053377 ~ 1064774 (-)
vgll4a LOC107675174,LOC107736947,LOC107713758,LOC107684880,LOC107555803,LOC107574679 other downstream 537673 865477 ~ 882184 (-)
ndnl2 ndnl2,LOC107736943,LOC107568481,LOC107714263,LOC107660884 other downstream 633978 779085 ~ 785879 (-)
smim29 si:dkey-226k3.4,LOC107690111,LOC107567962,LOC107724208,LOC107738791,LOC107678078,LOC107571229 other upstream 87244 1507698 ~ 1512329 (-)
LOC122328833 LOC107669693 other upstream 682256 2102710 ~ 2116883 (-)
LOC122328838 LOC107680059,LOC107748448,LOC107565963 other upstream 1349028 2769482 ~ 2839047 (-)
LOC122328849 LOC107718007,LOC107687303,LOC107571802,LOC107748430,LOC107680054,LOC107565975 other upstream 1366842 2787296 ~ 2798533 (-)
si:zfos-905g2.1 si:zfos-905g2.1 other upstream 1449164 2869618 ~ 2874758 (-)

Expression


Co-expression Network