LOC122328703


Basic Information

Item Value
gene id LOC122328703
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9885045 ~ 9888379 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247821.1
ATTATTCGCTATATTATAGGCTATGAGTCTATTAGTTATTCAATGacaataaaactgcaataaacctccatttaataaacatatttgttgttttaaaatgtaatagaaTTGTAAATGTTTCTAATAAAAGATCAAATTAATGATCACAATTCAGCCTCTTCTTTCCTCAGTAGCTGTCAGTAAAACATTCTACCCCAGGTTTCAGTTAAGAAACGTATAGATTTCacaagaaatgtaatttttatattattcatttcaaagaaatgtCTAATAATCAGAACTAAAAACTTTCCTTTCACTCCAATTTGGTTTCAGTTATTAATGCAAATGGCTATATAGCATTTGTTCCGCAAAAacgttgtaataataataattactaatattattaccattattattaaaatgctacGTTAAGATTgaattctgcatttttaaaacgcaTTGTTTTCCGTATTATCTGTTGGAAATAGAATAGCTACGCATTTATATTGTATAGCTGCTGACAGACGTAAACGTTTGCGTTCACGCTGAGCATCACTCGCGCACGCTCTCTGAATTCCTTGGAGTTGCCGGGTGGCATTTGACTGAGGTTTTTTTAATGGTGTGTCTCTGACCGGAAATAACGGTTGTGCGCGCACCGGAACAGTGGGATTCATAAAATGGTACAGTAGTGACCCCACGCGTAATCACGCATTGCTCATGGGAGAGTCCGTGCAGCTTTCAGCACCGATGCCCTCTAATAGGATCCCACGAGAAGCGTCTCATATGGCCCACTGGCGCCTCCGGAGGGGCACGTGAAATGGATACTCCGCGTCCCCAAACCCcatgttttgctattttaatggTACCCACACCGGTCTCTAATACAACCGACTAATTCAAGCCAAAACATCCCGATCTGTGCGAGCTCTAAGTGGCGCGGCTGAAGGCGAGTCAAGAGTGGTTTTAAATCAGGTGATGATTGCTAGGACACACGCGGGGCATCCGCTCTCCTCTCAGCACGTTAGTTAGTGCCCATCATCCTTAGATGCCCCTGGTTATATAGACGCAGATTAAACGAATGTGTAAAATTGCAAAAAGAACGAGACGTCCACGTGCTAATTGCAAGTTTAGAGATTACCAAAGGAGGAGAACGAATCTCCAGAGATCTGCCCTCTGACACCTCAGAGTTCCGGTGTCTCACAAACAGCATCCCTCTGCGCTCTCTACCACAGCAAATTACCAAAGGTATTTTAACCTTGCCATAGTTCTTAACCTGACAGATGAATGGACAGATCTTGTTTCTTGCAGCGGTGTATCAGGTTTTCCAGAGATTGCAGGTGTGATAAATCAAAGATAGTTATTTTCAGTTATCTTAAACTGAACTTTTACAGATGCTCACTGCATGCATGTAAAAAGTATAAGGATATGGTAAGACTGtgagtctgtctctctcttcctccttggTGGGTGGGCTggtcaaaagaaaataaaagcggGATATAAGATTAATCGTCCTGTCCTGGAGCAGCGTTATGTGTAGAGCTTAAAATAGCCACTGTTTTCCACAGTCACTCTCAGACTGAGCTCTCTCATCTTCCCTGACGCTAAAACCCTGAAAGTTCTTCTGGAGAAACGGTGACAGACAGCAACAGGGACACGGACGCAAGCGAGGAGAGAGACGAGGGCACGGAGTGCAGTCTGGGATGAACGCTGACCTGGAGTGGATCGGCTGTCAGATATTATCAAGATGTCTTGCAGCTGTGCATGTGTTGTATTTGCGGATGTGTGTGTGgcttgtgtttatgtttgtgtgtgttttggggtaGGGAGGCTGGGAGTGGTGGTGTTACTCCCCTGCGTTCGAGCCGCTAACTGCCAAGGTCAATGTCCACAGTTGGAATGCACAAGTGCTTTGCCTTGTCGCGAAGTTTTAAGGAGGACGCAACAACGCCGGACACGAATACTTTCAAAGAAAAATCGTTTTAAACAATGCAAGGGAGATGCCGTGCTGCTGGGCTCTTTGGCAGGTGTTGCTCAAAACAAAGTGAAACCCTTACAGCGATTGTCAGTGGTCAACGATACAGCCTTTGTAAGTTATTGCATGAAGATGGAAACAATAATTCATCTTTGGGGTGTATCTATTGTTGTAAATCCGTGATGCGCTGAATTATTGCTTAAAACggtgcattttttaaagaagacaCAAACATAAACGTTCAAAATAATGTTCTAATAAACACATTCCACGTTCAGATGTCAAAGTACATGAAGCCATGgaaatgcacacatgcacaaacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247821.1 True 2281 lncRNA 0.42 3 9885045 9888379

Neighbor

gene id symbol gene type direction distance location
rps12 rps12,LOC107671850 coding upstream 47863 9834324 ~ 9837182 (+)
LOC122329332 NA coding upstream 49566 9835395 ~ 9835479 (+)
LOC122329334 NA coding upstream 49875 9835096 ~ 9835170 (+)
sh3bgrl2 sh3bgrl2,LOC107671851,LOC107701732,LOC107708803,LOC107571206,LOC106608335 coding upstream 54855 9822809 ~ 9830190 (+)
irak1bp1 irak1bp1,LOC107656539,LOC107708805,LOC107571105,LOC107701704,LOC107549065,LOC107756383 coding upstream 124428 9758867 ~ 9760617 (+)
tbpl1 tbpl1,LOC107571264,LOC107756392,LOC107671848,LOC107549057,LOC107723755,LOC107701734 coding downstream 15844 9904223 ~ 9908862 (+)
myb myb,LOC107701741,LOC107549054,LOC107671892,LOC107756348,LOC107571350 coding downstream 107418 9995797 ~ 10005646 (+)
armc1l armc1l,LOC107723767,LOC107671895,LOC107571378,LOC107701743,LOC107756398,LOC107549053 coding downstream 149488 10037867 ~ 10041353 (+)
si:dkey-126g1.9 LOC107549036,LOC107723751,LOC107756364,LOC107572772 coding downstream 161561 10049940 ~ 10053458 (+)
nemp1 LOC107756399,LOC107701744,LOC107549035,LOC107671884,LOC107572777 coding downstream 165267 10053646 ~ 10057473 (+)
G156098 NA non-coding upstream 69736 9813217 ~ 9815309 (+)
G156096 NA non-coding upstream 76765 9802696 ~ 9808280 (+)
G156047 NA non-coding upstream 245219 9622479 ~ 9639826 (+)
G156034 NA non-coding upstream 300465 9584169 ~ 9584580 (+)
G155985 NA non-coding upstream 670591 9214140 ~ 9214454 (+)
G156108 sgk1 non-coding downstream 33762 9922141 ~ 9923225 (+)
G156142 NA non-coding downstream 106067 9994446 ~ 9994653 (+)
G156168 nr4a1,LOC107671891,LOC107723761,LOC107572787,LOC107756405,LOC107701750,LOC107549046 non-coding downstream 246476 10134855 ~ 10145461 (+)
G156182 grasp,LOC107671830,LOC107723769,LOC107594022,LOC107549045 non-coding downstream 273619 10161998 ~ 10163976 (+)
LOC122328771 NA non-coding downstream 366407 10254786 ~ 10256406 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other upstream 115425 9683746 ~ 9769620 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 762652 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 783673 8941031 ~ 9101372 (+)
G155799 NA other upstream 1396404 8488086 ~ 8488641 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other upstream 1551669 8321705 ~ 8333376 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other downstream 182401 10070780 ~ 10089818 (+)
LOC122328781 pifo other downstream 441472 10329851 ~ 10363818 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other downstream 527284 10415663 ~ 10427162 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 626600 10514979 ~ 10518751 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 662718 10551097 ~ 10554720 (+)

Expression


Co-expression Network