LOC122328771


Basic Information

Item Value
gene id LOC122328771
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10254786 ~ 10256406 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247831.1
TGGAAAGACCTCTTGTCATGTCGATGCGTCAAATTCGGTGTTCTCTGACCCATGTCACCATGTCTATAAGTACCTGGAAGTGACATACTCCTGCATATGAGTTTATGAAGCACGATCTGCATCGGTCCTTGAGGAAACAGCCTGGAGGAGCAGAAGCACATCTTTTTCTTAGCAAATTTCTTAGCTAATTGTgttctcttttctttaaatctgctttgaaactttttttttcatacaaataaattgcatttgaaattaCATCTGCCTTTCCTCCTTCTGACACACTGGTGTCCTTTGAACAACCATACGACATTGCACAAATTATTAcagtagcatttatttgaacaaatatttaactGTATATAATACAGCATATTGTTTAAAGCAATAtgaaataagtgtttttaaggAAAATAAGTATAATATGCAGAGAATGTGAAACACTGATACACTATTATACTTTCTTCTCAGTGGTAATTTGGGATTGAGCTTATCAGATGCAGCAAGCATTTTTGTTATTGCATTTGTAATCATGCCAAAACAGTTAATGTCCATTGTATCATTAAAACATGCAGATAAGTAATGAGGAATGCTCAACACTCAATATaaaagacatcttttttttcatttccctgTTCGGAAAATACTTTATGACCAGTCAAAGATAACAAAATGACATCTACAGATCAAAAGGCCAAGGATATGGAAATAATTCCTACGTTTAGTATAACAAGAGCCGAAGATGAAGCTGAAAAATGACTGCCTGCCGCATTGAGACTCCCTTTATTCCTCACTGCCATTACCCACACACATTTagatggtcttttttttttgagcagcagcAATACAAAAGTCTTGCTGTAGATTTGCTTGTTCTGGTGAGCATTTTCTCAATCTCTTTACTTGCTTCAAAGCAGCAGCAACATGCAGATCGATTCAGCTGAGACCACAAATATTACCCCCGCCTTGTCATATTACCCCATACCACGCCAATATCCTAGAGTTGTCATGATAGAACTGTGTTGATATAACGCCATATTTTGGAAAACTCTTTGCCCAGGGATGACCAGAGAACGTGGTCTTGAGAAGTTCTGGAAATGTGAACGCACAAAATCATACTTTACCTCAACAGGAACATGTGTCTTCGTCAGACATCTGTTGTTCTTCTGTTCACGCATTCAACGTGCTGGTGCTAAAGCTAAGTTGTATCATTTTGCTGGTCTTCCTGTGTCAGTATGGTGAGAATGGCAGTTTActaatgtgtaattaaataaaaaaagatctgaAGAAAGATCTGTGCGCCTCAGCTGTAGTGAGTAACAGTCATTTCTAGATTTTTGGTGTTTTGTGCCCAAATTGCACAGTATACAGTTCCTGTGTCTtgaaatttgt

Function

GO:

id name namespace
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247831.1 True 1392 lncRNA 0.37 3 10254786 10256406

Neighbor

gene id symbol gene type direction distance location
taf8 taf8,LOC107723763,LOC107549030,LOC107756368,LOC107671856,LOC107594013,LOC107701755 coding upstream 10945 10240311 ~ 10243841 (+)
slc39a5 slc39a5,LOC107723731,LOC107549043,LOC107756408 coding upstream 37185 10212843 ~ 10217601 (+)
zgc:56699 zgc:56699,LOC107671838,LOC107756366,LOC107701712,LOC107549049 coding upstream 130575 10121748 ~ 10124211 (+)
cd63 LOC107723742,LOC107671882,LOC107572785,LOC107701749,LOC107756350,LOC107549048 coding upstream 137830 10108293 ~ 10116956 (+)
mylk2 LOC107671840,LOC107756349,LOC107701711,LOC105903258,LOC107572773,LOC107549024 coding upstream 148094 10099065 ~ 10106692 (+)
LOC122329250 si:dkey-261h17.1 coding downstream 59679 10316085 ~ 10322007 (+)
LOC122329277 ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831 coding downstream 112047 10368453 ~ 10381390 (+)
LOC122328600 pcmtd2,LOC107708816,LOC107570992,LOC107701717,LOC107756374,LOC107656550,LOC108433859 coding downstream 172871 10429277 ~ 10432503 (+)
LOC122329231 LOC107656551,LOC107708819,LOC107570956 coding downstream 191402 10447808 ~ 10449331 (+)
LOC122328734 sdcbp2,LOC107657068,LOC107672005 coding downstream 298870 10555276 ~ 10566657 (+)
G156182 grasp,LOC107671830,LOC107723769,LOC107594022,LOC107549045 non-coding upstream 90810 10161998 ~ 10163976 (+)
G156168 nr4a1,LOC107671891,LOC107723761,LOC107572787,LOC107756405,LOC107701750,LOC107549046 non-coding upstream 109325 10134855 ~ 10145461 (+)
G156142 NA non-coding upstream 260133 9994446 ~ 9994653 (+)
G156109 NA non-coding upstream 281252 9880762 ~ 9973534 (+)
G156217 NA non-coding downstream 7584 10263990 ~ 10346054 (+)
G156169 NA non-coding downstream 130554 10386960 ~ 10387500 (+)
G156171 NA non-coding downstream 131462 10387868 ~ 10388626 (+)
G156387 LOC107747988,LOC107671949,LOC107707743,LOC107603135 non-coding downstream 263736 10520142 ~ 10520767 (+)
G156401 NA non-coding downstream 316808 10573214 ~ 10655710 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other upstream 164968 10070780 ~ 10089818 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other upstream 485166 9683746 ~ 9769620 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 1132393 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 1153414 8941031 ~ 9101372 (+)
G155799 NA other upstream 1766145 8488086 ~ 8488641 (+)
LOC122328781 pifo other downstream 73445 10329851 ~ 10363818 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other downstream 159257 10415663 ~ 10427162 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 258573 10514979 ~ 10518751 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 294691 10551097 ~ 10554720 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other downstream 306938 10563344 ~ 10572246 (+)

Expression


Co-expression Network