LOC122328804


Basic Information

Item Value
gene id LOC122328804
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6725037 ~ 6728210 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247834.1
CGTAGAATGACATTTATCAGCTATAAACGCCATCGCCTTGGAAACCCACATGAGTCAACAAAGACGATATGCAAAGAAGTCTAACACTGATACACACGCACCCAAAATGTACCCAAAGCCTGTCACCCAGTTTGGCTAAAATGGGACGTTTGAGAGGACTTCAAAATCCTCTTCCAGTAAAGAAAACTCCCTGTCACATCTCGCAGGACTAAAGAGTGGGACTTGAGCACGACTACAGTAAAAAGGACTCTTTCATTCAGCATTACACACGCCAATTACACCCACGGACCCTTTACAACACGGCTTTGTTCCCCCTTCACCAGAAAGAATTGCCCTCTCATCGCTGACGCAGGACTTTGACTCAATCTTAGTCAAACGAGAGCGATTGGAAAACCTTTATACAAATGgGCGTCCGTTAGATGGCACCAGTGCTTCAATGAACACACCGATCATCTGCTGAACGATTCGCTCGGAGCTCGAGCCTCTCATGATGAATCATAAACACTTTTATCCCATGAACATCGCAGAAACAGAAATCTATACAAACATGAAGCTTCGGGGAGAAAAAGATGggtgtttttttgcaaaagttgcaacaattattattatattattgttttatttaacaaatggTTGTGGAAATAATTTACATGAGATGCtttatttgcacacacacacacacacacacacacatatatgattTTTCCTTGGTGGTATGTGGACAGACCATAATTACAGGAAGAAAAGAAACCAACACTGTAGTGCTGgtatgggtttgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247834.1 True 779 lncRNA 0.42 3 6725037 6728210

Neighbor

gene id symbol gene type direction distance location
lama5 lama5,LOC107681381,LOC107727012,LOC107666435,LOC107705651 coding upstream 16370 6640878 ~ 6708667 (+)
mapre1b mapre1b,LOC107559863,LOC107681395,LOC107666429,LOC107551545,LOC107727025 coding upstream 91690 6622854 ~ 6633347 (+)
prkcbp1l LOC107551546,LOC107681388,LOC107727017,LOC107666406,LOC107705695 coding upstream 102627 6603646 ~ 6622410 (+)
plxnb1a plxnb1a,LOC107551544,LOC107726992,LOC107705653,LOC107666389,LOC107681368,LOC107559853,LOC108275501,LOC105889750 coding upstream 135436 6525611 ~ 6589601 (+)
krt5 LOC107727021,LOC107551543,LOC107681386,LOC107559866,LOC107705699 coding upstream 210944 6509691 ~ 6514093 (+)
soga1 LOC107727023,LOC107705691,LOC107681366,LOC107666465 coding downstream 2606 6730816 ~ 6772986 (+)
oprl1 oprl1,LOC107727003,LOC107681404,LOC107666560,LOC107705672,LOC106572940 coding downstream 731288 7459498 ~ 7487536 (+)
myt1b myt1b,LOC107690850,LOC107747484,LOC107681384,LOC107559484,LOC107558231 coding downstream 956094 7684304 ~ 7765052 (+)
LOC122328639 LOC107707759,LOC107559486,LOC107747485,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 coding downstream 1038013 7766223 ~ 7773972 (+)
LOC122328711 LOC107707759,LOC107559486,LOC107747485,LOC107690852,LOC107558232,LOC100536777,LOC107681385,LOC108440950 coding downstream 1086881 7815091 ~ 7821793 (+)
LOC122328803 NA non-coding upstream 1173 6720370 ~ 6723864 (+)
G155455 NA non-coding upstream 17778 6703511 ~ 6707259 (+)
G155454 NA non-coding upstream 19511 6703173 ~ 6705526 (+)
G155372 NA non-coding upstream 87549 6635881 ~ 6637488 (+)
G155371 slc16a7,LOC107727020,LOC107559865,LOC100699719,LOC102785214,LOC101478097 non-coding upstream 122954 6601409 ~ 6602083 (+)
G155457 NA non-coding downstream 68901 6797111 ~ 6822050 (+)
G155509 NA non-coding downstream 108753 6836963 ~ 6839161 (+)
G155619 NA non-coding downstream 672780 7400990 ~ 7401189 (+)
LOC122328944 NA non-coding downstream 1138570 7866780 ~ 7868674 (+)
G155651 NA non-coding downstream 1191993 7920203 ~ 7921525 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other upstream 126505 6592602 ~ 6598532 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other upstream 1889553 4817365 ~ 4835484 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other upstream 3028015 3694652 ~ 3697022 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other upstream 3628002 3060509 ~ 3097035 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other upstream 3715020 2995169 ~ 3010017 (+)
G155561 NA other downstream 497784 7225994 ~ 7238919 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other downstream 570150 7298360 ~ 7305534 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other downstream 1593495 8321705 ~ 8333376 (+)
G155799 NA other downstream 1759876 8488086 ~ 8488641 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other downstream 2212821 8941031 ~ 9101372 (+)

Expression


Co-expression Network