LOC122328882


Basic Information

Item Value
gene id LOC122328882
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 3011181 ~ 3021971 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247845.1
agaaaatgcaaacattaaatGGTGTCGACAATTTGACAATTGAGTCAAACCGTCGATTGGTGCATTTACACATAAACGGCATTCAAAACTATCGTTCCTGTGTGAAATGACAAAATGGGGTTTACGAACGTTGCTCGTTTTTAACATGCCGAGGACAATTAGGactacttaaaaacaaaaaaaaacacctagcAGCCTCCAAGCGTCGACACACTTTCTCTGGCCCGTACAAACGCCGGCAATACGCTTTGCGTGTTATTTACACTGTAGAAAATGTCCGTAAATTTCACAGTAAAATACCGTATAAATGGTACAGAATAAAACCGTATTCCACAAAACATGGGACGACCATtgattttacagtgaaaaaccGTAATTGCTTTTACAGAGTATGACCttacatttaacagttaaaaacatatcaaaaaGTACCGTATAAATGCTACAGGATAAAACCGTCTTCCAAAAAACATGTCATAACTGTAAAATACGGCTTATTGCAGTTCATTAACAATATACTAAGACACATGAATTTCTTACATGTGCAAAAAAcatgtgaaatgtgtgtttttggaacatttttCTGGCAATCCCATGTGACTTCAGATTTCAAAGCCCATAGTATAAATGTCCAACATGTGATGACACGTAAACAAAATTTGATCGTTACATTAACATCGTTACCAGAAAAACATTATGTCTTGGGCAATTCCAGGTAATTGCACATTTTGACACGACAAGCCTCGCGCGGGACACAGCGAACACATATTTTGGATTATAGCGGGCCTGGAAGAACTGCTCATATTTGACCAAACCCTTGATAGAGTTTAAAAGTGCTAATAATATCTGCCTAGATATGCACTAGTAAGACGACAAAACGTTCTTAAAGGCGAGATCTTTTGAGCACTGTAGCATTGGTATCGTTGGTGGTTGAACAATCATTTCAAACCAGACACAATTTCAACATGTTGGATAGTAAccctaaaatgacattaaagagcTTCAAATCTGGTAAACATCTTTGAATTCAAGTTTGCAGTGAACTCTGTTGCCGTGACACTTCTGCCGGCcccatttatttcatatatttcctCCCAGTATGGCGGCGTAAGCAGAACTGGTCACGTGACTGCCAGACCTCTGTAGCACATTGTGTAAGAGTAAGAATCCGTTTTGGATATATTAGCTTGTTAGCTAATAGCTCATTTCTAATGTCGTAAACACGTTTGCTTTCATTTCAAACAACAGTAGAGTGCTTTGATTCTCTTTGATGACCACCATTAAGTATACGTAAGACTATGTTCCAAACATATTTCTCAGTCATGCTTTCAAGTCAGATATTGACATCTGTGTTACAGTAAAAgccttttgttcattttgtaagGTTATGTGCAATTATTGCCCTCTTAACGGgtctcattaaaaatacatcaacaTATTTGACACCACTGTACAGTGTGCACTTGAAAAACACAACTCAGGAGACGGGACataaacatttctcacatttttgGTGCAACACTGTATAGAAGGACTTTACAATTGTTTGGTTCAATTGTCTGCCTACGTCCACTTTAACATTTGTACGTTTGATttgaaaaatggaaatattctTTTGCTGTAATTAACAgcgcttttacattttttattatttttttttaggtttgccTGCTACGTTCCATTGAAAGACACTTTGACGTGTTTATTGGAGTCTGACCTATGGCCAAATTGTGCAATTTACCACCTCATATAAGATCAAATACAGACCGCGTGTCACTTGTAATGCTGTGTcgacaaaaacactttaaacactttGGCCATGACAAAGTTTTGTCAAGGCtcatttcagaaagaaaaaagtcaaaggGACTGTTTTGTGCATTGCAGGGGTCTCGTAATATTGTAATATGGTTTTAcacaacattttagtttttcccAATATTTCTGCAGGTATTGCCGGATGACACGAGCACATTTTCAAACAGATCCAAATGCATGTGGACCTCAGCGCACTCCTGAAAACTACCAATCTGCAGTAGACATTTTACAGTCTGAGGGACGACAAAACGTTGAAGGTGTAACATCTGGCTCCATTTTTCATTCGCTGTTTAGGCCGTGACATTTTTGAGCCCTTTACCTCAAGTACTCAAGTATTCAGTTCTGAATAGACGCATTTTAAGTACAGTGCAGTGCAGTGAACTCCAACAGAGTAAGGCTTTCTGGTCAGGCTGTTCAGAACTGGACTTCTTCCTGCGATCATGTGTGACAAGGTCAAAGAGCCCATGGATGATGTTTGGCAGTTGACCCTTCAACTAAAAGACATTGTGGAGATGATTTGTGCGCAGAACATTTCATTGCCAGAGGTCGCATACCTTCATGTTCTTATCCAAGAATATCTTGCTtgcacattctctctctttccaggaCATGGACTAAAGCCTAAGCATCACTACTTGAGAGCAAGCACGGTTACTTTAAAAGATGCGCTAGAAACGTAAAGAATTTCAAAAACCTGTGCTTCACTCTCTCTGAAAGGCATCAATTGTACCAGGCTTATCTGTCAGAAGGGTcgatgtgtgagagagaaaaaaacaccactGCATATATTACCCACAGCTATATGCTGATTCTGTTAAAGATGCAGTGAGGCAGTTTGGATTTACAGAGAACAATACCAAAGTCTCAGCACAAGTCATGTACAGGGGTACGCTATATACAAAAAAGGCCAGTTCCTTGTGACAAACCATATGGACTCAGTAGAGTTTGGAGAACTTGCACTTATTTTCATGAAAGATAAAGTTGTTCATTTTCTGCTGAGAAACTATGTAACAGAGTTCATTCCTGCATACCATTTGCGTGAATTGAAAAATCAGACCGAAATAATGCACTGTGTGAAAATCAATGACCTGGCACATTTCTATCCTTTAACATCATATATGACGAATGGAAAAAAGGCTAATTCCATTAAAGCACAGTGTGATGTCACGCTGAACATGATGGTCGATCTGTATTTTCTCAgattgttttggttgtttttcagaaatggaTGATTCAGagctaaacatttcaaacattagcGATGCCACTGATGCTGTATTACCTGAACTCCCAATCGCAACTACAAAAAATCTCTTGAGGACACCTTCAAATCACTTGGAGTGGAGACCCCAGAAGAAATCGGATCTGGGAGCTGTACTGAGGCCCATTCAAGCCAGgacatttatttctgttctaaAGGAGACCAACAGCGTGATTGGTCCTGGATACTACTCCTTGGTCAAACTATCTCAAGCCAGGGTCGAAAAATGCAAGAAGGACCAGCacaccaaaaatacaaaaagcgcATTCACGATACAGACGAATGTGACACTGAGGAAGTCACACCCGAAAAAAGAGCTGCAGTCCAAGATACATACGGCTGCGTTCATTGGGAAGTTACATTTATGCCCCTCAGTGAAACTGCTGAGAGTTTCTCGTAAAGTCTACATACTACAGTCAACGAAAAGATATCGACAATGGAACGGACATGAAAACTCTCACTGAGGAGAGGCCATTTTTGTTTCAGGAAAGTGGAATGGAAGTGCACTTTAAAGACCTCACAGGGACAGAAAAGGAAACAGGCTGTTGAACTTTACGAGGAATCTTTGTGCAACCAGGAACAAGCGTGTCTTACGGGCTGTCACAAAACTTGAAGTTTTGAGAGGACAGACGAATGGTCGCTCAGAGGATGTGAAAGACACGATTCTTCTACTTCTCTCCTATTTTGATGAGAAACAAGAGCTCCTTCTTCATTATGTACGAGAAGAGACAAGCCTTGCAAAGGATGTAGAGTTGGACAACCTGCCTCCGACGCCTTGCATTATTGTGTGCGGACCCTCCTGCTATGCTGCTGTTCGATTTATGCTCAGTGTGGACCGCAAGATTGTGAATCATGACGTCACTGCATTCATCGCTGCCGTTTAAATGCCTAACGTTGGGCAGTTATTACTGTTTCAGTACACACCACCCTACTGAACTGGCATCAGTGCTTGAATTTTTGCAAACgtGCTTCTTCATCATCAATCCTGAAAAGGGCACAAAGGTCGTggaaaagaagaacaaaaaacgACTCCCAGTGAACCCAAGAGTCTTCACCTTCATCTCTGACCTTTCTGATCACGAGTGGCGAGAGACCTCGCAAAGGTGGCCTGCGACGGAAACGGTTTCCATGTTTAAACTCTTGTTAAACGTTGAAATGTATACTCTCTAAGCACTTGTGTTGTGCTTTGTTCTGCTTTAGtagttattattgtaaatattcgACAACCTTTATATATTCCCAAGCTCAGTTTGAAGTGGCAGTTAGGGAACAGAAACTCTGaatctacattttaaatgcgTAGTCTGATGCTGATTTTAAGACTGATCTTAAGCCATTGTTTACTTCTGATAAAATGTTCTGATAATGTTGTTTGAAATGCCTGCCagtcttcattaaaaatacttggGACCGCTTGA
>XR_006247846.1
acacacacacactcattataCTCACCTTTTCCCACTACCTCTGAACctacaaaaggaaaaaagaacaacacacaccacaacaaCATACAAAAGCACAAACTTTATGGATTTCACTCTAGTACAACACTTACACACCTGCTAAAGACACATTACAGAGGTCTGTCATTGGGCAAATACAAAAATGTCCTACTGCTGCCTGCACAACAACATACATCACTTTCTAGCCACAACCTCACCCCTTCTACACACCTGCTCTTCAATCCCTCCTGGGGGGGCTGCCGTACAATCTTACAACTTCAAATTACAAACAGTTACACAAAAACACTCTTTACCTCTTACCACTTTCACTCGCTTACAAAAATACACTCTTTGCATCTGTGCTGCGGCCTGTATACACTACAAACATGACGGGGATTAGTCTCTACCACCTCGTTCTACACTTCACAAGGACTCAAATCCTGCCCTCTCGCGACTACTCGCAATATTACACCTACTTCTACTCCTAACGCATCTTTTGCGCCTGGATTGCCAAACGGACCACGTCTACGTTCGCACCTTTCTAAACGTTTCTACTTTTTCGACACTGGGATCGAATATTCACTTGCATCTTTCTATTACAAAGCGTTATTTCTTCTACATTACTTACAATTATTGCTTTTCTTTCCGTTTGGACCTTCACTGCCTACTCCAACTCTGGGAACAGACACAGTAGTGGAGTGTCCCATCTAGCTCAAAGGCTCTCTACAGGAGGGATGAACACCAGCTCGCGTCTGCCGCGCAAACTCGTCCTGTTCTCTTCAAAATAACTACAACTATGTACGTCGTTCACTCAACTGGTCGCGTCCAAAGCACCATCTACAGCCCTCGCCTTATTCCCGTCCTCAGaaatggaTGATTCAGagctaaacatttcaaacattagcGATGCCACTGATGCTGTATTACCTGAACTCCCAATCGCAACTACAAAAAATCTCTTGAGGACACCTTCAAATCACTTGGAGTGGAGACCCCAGAAGAAATCGGATCTGGGAGCTGTACTGAGGCCCATTCAAGCCAGgacatttatttctgttctaaAGGAGACCAACAGCGTGATTGGTCCTGGATACTACTCCTTGGTCAAACTATCTCAAGCCAGGGTCGAAAAATGCAAGAAGGACCAGCacaccaaaaatacaaaaagcgcATTCACGATACAGACGAATGTGACACTGAGGAAGTCACACCCGAAAAAAGAGCTGCAGTCCAAGATACATACGGCTGCGTTCATTGGGAAGTTACATTTATGCCCCTCAGTGAAACTGCTGAGAGTTTCTCGTAAAGTCTACATACTACAGTCAACGAAAAGATATCGACAATGGAACGGACATGAAAACTCTCACTGAGGAGAGGCCATTTTTGTTTCAGGAAAGTGGAATGGAAGTGCACTTTAAAGACCTCACAGGGACAGAAAAGGAAACAGGCTGTTGAACTTTACGAGGAATCTTTGTGCAACCAGGAACAAGCGTGTCTTACGGGCTGTCACAAAACTTGAAGTTTTGAGAGGACAGACGAATGGTCGCTCAGAGGATGTGAAAGACACGATTCTTCTACTTCTCTCCTATTTTGATGAGAAACAAGAGCTCCTTCTTCATTATGTACGAGAAGAGACAAGCCTTGCAAAGGATGTAGAGTTGGACAACCTGCCTCCGACGCCTTGCATTATTGTGTGCGGACCCTCCTGCTATGCTGCTGTTCGATTTATGCTCAGTGTGGACCGCAAGATTGTGAATCATGACGTCACTGCATTCATCGCTGCCGTTTAAATGCCTAACGTTGGGCAGTTATTACTGTTTCAGTACACACCACCCTACTGAACTGGCATCAGTGCTTGAATTTTTGCAAACgtGCTTCTTCATCATCAATCCTGAAAAGGGCACAAAGGTCGTggaaaagaagaacaaaaaacgACTCCCAGTGAACCCAAGAGTCTTCACCTTCATCTCTGACCTTTCTGATCACGAGTGGCGAGAGACCTCGCAAAGGTGGCCTGCGACGGAAACGGTTTCCATGTTTAAACTCTTGTTAAACGTTGAAATGTATACTCTCTAAGCACTTGTGTTGTGCTTTGTTCTGCTTTAGtagttattattgtaaatattcgACAACCTTTATATATTCCCAAGCTCAGTTTGAAGTGGCAGTTAGGGAACAGAAACTCTGaatctacattttaaatgcgTAGTCTGATGCTGATTTTAAGACTGATCTTAAGCCATTGTTTACTTCTGATAAAATGTTCTGATAATGTTGTTTGAAATGCCTGCCagtcttcattaaaaatacttggGACCGCTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247845.1 True 4497 lncRNA 0.40 4 3015192 3021971
XR_006247846.1 False 2342 lncRNA 0.44 5 3011181 3021971

Neighbor

gene id symbol gene type direction distance location
rhoac rhoac,LOC107687289,LOC107558917,LOC105890655,LOC108438067,LOC102777028,LOC106572042 coding upstream 17826 2989515 ~ 2993355 (+)
LOC122328866 LOC107709226,LOC107576631 coding upstream 22165 2983338 ~ 2989016 (+)
LOC122328851 LOC107687290,LOC107709248,LOC107558915 coding upstream 34335 2965600 ~ 2976846 (+)
LOC122329171 NA coding upstream 54264 2955109 ~ 2956917 (+)
LOC122328870 NA coding upstream 59553 2948990 ~ 2951628 (+)
twist3 twist3,LOC107696972,LOC107748453,LOC107554215,LOC107576512,LOC107704622,LOC107709223 coding downstream 111560 3133531 ~ 3137978 (+)
LOC122328845 LOC107554212,LOC107697038,LOC107571185,LOC107673381,LOC100001805,LOC107752455 coding downstream 297470 3319441 ~ 3352334 (+)
taf11 taf11,LOC107554211,LOC107566076,LOC107696971 coding downstream 409352 3431323 ~ 3433604 (+)
ap4b1 ap4b1,LOC107697033,LOC107672998,LOC107566065 coding downstream 452045 3474016 ~ 3482861 (+)
zgc:101663 LOC107709235,LOC107697032,LOC107566074,LOC107746337,LOC107554219,LOC107673483 coding downstream 461041 3483012 ~ 3491622 (+)
G154425 NA non-coding upstream 54046 2947774 ~ 2957135 (+)
LOC122328888 NA non-coding upstream 72100 2938721 ~ 2939081 (+)
G154369 NA non-coding upstream 159733 2851024 ~ 2851448 (+)
G154368 NA non-coding upstream 166026 2844852 ~ 2845155 (+)
LOC122328886 LOC107748448,LOC107680059,LOC107565963 non-coding upstream 168159 2835863 ~ 2843022 (+)
LOC122328883 NA non-coding downstream 27427 3049398 ~ 3051276 (+)
G154487 tmem106c,LOC107704621 non-coding downstream 90551 3112522 ~ 3113171 (+)
G154517 NA non-coding downstream 184511 3206482 ~ 3206688 (+)
G154561 NA non-coding downstream 220244 3242215 ~ 3242722 (+)
LOC122328887 NA non-coding downstream 292537 3314508 ~ 3315260 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other upstream 1164 2995169 ~ 3010017 (+)
G154424 NA other upstream 54456 2923382 ~ 2956725 (+)
LOC122329169 NA other upstream 67375 2925308 ~ 2943806 (+)
prdm5 prdm5,LOC107698519,LOC107669703 other upstream 654454 2312722 ~ 2356727 (+)
LOC122328869 LOC107723021,LOC107694620,LOC107577481 other upstream 878348 2129998 ~ 2132833 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other downstream 38538 3060509 ~ 3097035 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other downstream 672681 3694652 ~ 3697022 (+)
LOC122328459 g6pd,LOC107723128,LOC107697003,LOC107594489 other downstream 1795394 4817365 ~ 4835484 (+)
si:ch211-220i18.4 LOC107551506,LOC107666586,LOC107559855,LOC107681367,LOC107705652,LOC108275527,LOC107100285 other downstream 3570631 6592602 ~ 6598532 (+)
G155561 NA other downstream 4204023 7225994 ~ 7238919 (+)

Expression


Co-expression Network