LOC122328886 (LOC107748448,LOC107680059,LOC107565963)


Basic Information

Item Value
gene id LOC122328886
gene name LOC107748448,LOC107680059,LOC107565963
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 2835863 ~ 2843022 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247850.1
TTTCGACGCAGTCCAGAAGAGCCTTCTCGCTTTGAATCGCCTTAGTCTCGTTACATGGGTGTTGAATCACAGTTCGGAGCAGTGTTTCGAAACATCTCGAGATCTCGACACCGTGTCCCTTGGGCTGGAAGGAAGGCTGCCCGCGCTGGTCCATACTGAGGTTGGGGAAACTACAGACTATGCGATTCTAAGCTGTTCAGCACTGACCTCAGTCATTAACTCAAACTCATCAAGTCTGACAGAGCTGGATATAAGCAACAAcaatctgcaggattcaggagtgaagctgctctgcgCTGAACTGGAGAATCCACAATGTAAACTTGAGGCATTACAGTTGTCAAACGGCTGTATTACAGAGGATGGTTGCACTGCCTTGGCTTTAGCACTGAAAAGAAATCTCTTACACCTGAGAAAACTGAATCTCAGTGACAGCACACTAAGAGACCCAGGAGTAAACCTTCTGTCTAACCTACTGGAGGATCCACT

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247850.1 True 489 lncRNA 0.48 3 2835863 2843022

Neighbor

gene id symbol gene type direction distance location
tgm1 LOC107718009,LOC107558911,LOC107687295 coding upstream 1268 2826308 ~ 2834595 (+)
rabggta rabggta,LOC107680063,LOC107687297,LOC107565973 coding upstream 12785 2810635 ~ 2823078 (+)
stxbp3 LOC107687296,LOC107718001,LOC107571803,LOC107748431,LOC107680060,LOC107565974 coding upstream 25988 2798542 ~ 2809875 (+)
LOC122328832 utrn,LOC107669681,LOC107570770,LOC107710234,LOC107718008,LOC107549160,LOC108411446,LOC108275814 coding upstream 179281 2488719 ~ 2656582 (+)
trnal-uaa_38 NA coding upstream 349688 2486093 ~ 2486175 (+)
zgc:113423 LOC107687294,LOC107558912,LOC107717998 coding downstream 20821 2863843 ~ 2869880 (+)
cdh26.1 LOC107687291,LOC107709249,LOC107748449,LOC107565965,LOC107558905 coding downstream 42710 2885732 ~ 2899790 (+)
LOC122328848 LOC107709248,LOC107687290,LOC107558915 coding downstream 58792 2901814 ~ 2917548 (+)
LOC122329167 NA coding downstream 80358 2923380 ~ 2938718 (+)
LOC122329170 NA coding downstream 102990 2946012 ~ 2947855 (+)
G154365 NA non-coding upstream 38026 2797127 ~ 2797837 (+)
G154285 NA non-coding upstream 178178 2657374 ~ 2657685 (+)
G154230 NA non-coding upstream 561000 2271873 ~ 2274863 (+)
G154207 cpeb2,LOC108276376 non-coding upstream 586310 2215989 ~ 2249553 (+)
G154146 tcp1,LOC107669696,LOC107549175,LOC107558788,LOC107694622 non-coding upstream 701940 2133010 ~ 2133923 (+)
G154368 NA non-coding downstream 1830 2844852 ~ 2845155 (+)
G154369 NA non-coding downstream 8002 2851024 ~ 2851448 (+)
LOC122328888 NA non-coding downstream 95699 2938721 ~ 2939081 (+)
G154425 NA non-coding downstream 104752 2947774 ~ 2957135 (+)
LOC122328882 NA non-coding downstream 168159 3011181 ~ 3021971 (+)
prdm5 prdm5,LOC107698519,LOC107669703 other upstream 479136 2312722 ~ 2356727 (+)
LOC122328869 LOC107723021,LOC107694620,LOC107577481 other upstream 703030 2129998 ~ 2132833 (+)
LOC122328880 LOC107723010,LOC107683284,LOC107694619 other upstream 764464 2068668 ~ 2071399 (+)
snai1b LOC107694621,LOC107723015,LOC107549169,LOC107558792,LOC107738552,LOC107669687 other upstream 781888 2050032 ~ 2053975 (+)
G154108 plcg1 other upstream 870746 1964273 ~ 1965117 (+)
G154424 NA other downstream 80360 2923382 ~ 2956725 (+)
LOC122329169 NA other downstream 82286 2925308 ~ 2943806 (+)
rbm10 LOC107709225,LOC107687301,LOC107704624,LOC107748436 other downstream 152147 2995169 ~ 3010017 (+)
mitfb LOC107704626,LOC107709243,LOC107748437,LOC108438070,LOC107687304,LOC107558923,LOC107709232 other downstream 217487 3060509 ~ 3097035 (+)
ube2t ube2t,LOC107746510,LOC107707375,LOC107673550 other downstream 851630 3694652 ~ 3697022 (+)

Expression


Co-expression Network