LOC122328996


Basic Information

Item Value
gene id LOC122328996
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 6794103 ~ 6804919 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247875.1
CACCGATTCGGCCGCTGATCCAAACGGTCGTGGCTTAAACCTTACAGAATTTAAACTCAGTGAGTAAAGATTAAAGTTTATTTCTGTTCCTAGCATGTCATATCGTCTGGGCAACATTTATGaagaaagaaagtcatgcgGCTTTGAAACACCGTGAGGATCTCTTGCCCTGCCTGTCTAGAGAATGCCAGGCTGTTGCCGTGGTAACCAGGACACGTTTGTGCTGCGAGCTCCTCCATCCCTGCTGAGCCCCACAGTACAGAAAAAGAGCAAGACGGTATTGCACAACACCGGCGGGAAAACATCGAGAAAGACCCATGCAGAGTCACGGGAGACCATCTGAGAGAGAGCGTTTTGTCTGTACACTGACTGCTGTTCTGTAAAtagttacaaatatatatatatttgtaactattatgaatatatgttatgttatgttatatttgttttcctGATTTTATGTGAAATTGGCCAGAAGAAGAATAAGAGGAGTATAGGTTATTTTTGTGTTAGACGGTATTATGAAAagctaaaatgtatgtttttggaacctcattaagtatatttttttggtttgatttattttacaatgcaaCTACAGTATTACAACTAGTAGGGATGTAGAGAAACTAGTAGGAAAAAATTACAGTAGAACAAATTAATAAGCAAAATTTTATCAAACGCTCTTCActgtgtaaattaaatgaatatttcttcttattaaagtTACAAATGACAGACACCAGAAAAATTAGACTGCAGTCACTTTAAGAGCCGCCCAGATCCATTATAAAGTTGCACATTTGTTGTCTTTCTCAGCTGTTCCACTTAAGCCCTAATTACTGTGTTTATGAGGATACTTGTAAAGATGGAATTTTGACACatacaagtgtgtgtatgtaacaGTTCAAGGCctataaagcagcaaaaataacTCTTGACAGTGCACATAAACAGCCTCTCAAGCTGTGTGCACATATATCGAAATGTTTTccatcagatttgaagaaccagtttatagtttttgtgaagtttaggcttccAATCAGTGTTTTCAGTGTACCAGTTAATCGTGTATATCACCTACCCTTTTTTAACACTGGGTACAAAAAAGTACCATGTAGCACCTTGGTAATCCCATGCATTTTTCTAACGTTCTTCAAGGCGTCTTGatgtacaatttaaatttattgttCCAAAactatgtatgtttttgatATTATAATGTTAACACCACGTTTTCTGGACATAGCTACACGGTACCATGTAAAATACCATGTTATAGTACACAAATGTCACAGTAAGTTGCATTTGTTGTTCATGTACTAGTTATTTGATACCATGGTAATGTCACTTTGGGCAAGTTTTTTGAAGAAACATAGTGCACGAACATGGCTATATTTTATTACCATCTGATATCCCTGTATTTGCAatctaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247875.1 True 1439 lncRNA 0.36 3 6794103 6804919

Neighbor

gene id symbol gene type direction distance location
osbpl2b osbpl2,osbpl2b,LOC107727008,LOC107681391,LOC107666451,LOC107705692 coding downstream 72533 6713359 ~ 6721570 (-)
adrm1 adrm1,LOC107727009,LOC103354471,LOC108276396 coding downstream 80896 6708712 ~ 6713207 (-)
slc16a7 slc16a7,LOC107559865,LOC107705697,LOC107666398,LOC108429289 coding downstream 192020 6598718 ~ 6602083 (-)
zgc:171775 zgc:171775,LOC107705698,LOC107551519,LOC107681372,LOC107666627,LOC107559857,LOC107727002 coding downstream 272259 6515811 ~ 6521844 (-)
krt18a.1 krt18,LOC107727028,LOC107681396,LOC107551541,LOC107666358,LOC107705701,LOC107568050 coding downstream 336184 6454153 ~ 6457919 (-)
acss2 acss2,LOC107681393,LOC107551550,LOC107666475,LOC107559859 coding upstream 450 6805369 ~ 6819843 (-)
cables2b cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996 coding upstream 33888 6838807 ~ 6857465 (-)
LOC122328429 xkr7,LOC107551551,LOC107666518,LOC107681407,LOC107559858,LOC107705685,LOC107727032,LOC108435212 coding upstream 67058 6871977 ~ 6926416 (-)
LOC122328474 LOC107551551,LOC107666518,LOC107727032,LOC107705685,LOC107681407,LOC107559858 coding upstream 203978 7008897 ~ 7060251 (-)
sox18 sox18,LOC107727030,LOC107681403,LOC107705673,LOC107551552,LOC107666636,LOC107579252 coding upstream 283258 7088177 ~ 7091244 (-)
G155443 NA non-coding downstream 168835 6624419 ~ 6625268 (-)
G155435 NA non-coding downstream 181579 6611993 ~ 6612524 (-)
G155392 LOC107559866,LOC107705699,LOC107666380,LOC108429286 non-coding downstream 280010 6509715 ~ 6514093 (-)
G155391 krt8,LOC107551542,LOC108411779,LOC107727027,LOC105023875,LOC107681390,LOC107568038,LOC107705700 non-coding downstream 294354 6485439 ~ 6499749 (-)
G155413 NA non-coding downstream 309188 6484654 ~ 6484915 (-)
G155508 NA non-coding upstream 30456 6835375 ~ 6835589 (-)
G155578 NA non-coding upstream 32210 6837129 ~ 6838566 (-)
G155586 NA non-coding upstream 124767 6929686 ~ 7067824 (-)
G155597 NA non-coding upstream 295389 7100308 ~ 7106154 (-)
G155605 NA non-coding upstream 315484 7120403 ~ 7301136 (-)
G155489 LOC107681366,LOC107727023,LOC107705691 other downstream 62217 6730851 ~ 6731886 (-)
LOC122329188 LOC107709248,LOC107687290,LOC107558915,LOC107671882,LOC107572785,LOC107723742,LOC107701749,LOC107549048,LOC107756350 other downstream 1297629 5484212 ~ 5496474 (-)
LOC122329286 nav1b,LOC107666060,LOC107595432,LOC107740254,LOC107696445,LOC107587625 other downstream 1314281 5477841 ~ 5479822 (-)
G155227 si:zfos-452g4.1,LOC107724183,LOC107663057,LOC107696954,LOC107551515,LOC107705659,LOC107593949 other downstream 1339056 5454417 ~ 5455047 (-)
LOC122329181 LOC107601337,LOC107697001,LOC107723119 other downstream 1959583 4827478 ~ 4834520 (-)
ccm2l ccm2l,LOC107666505,LOC107551511 other upstream 53088 6858007 ~ 6867300 (-)
LOC122328436 cables2b,LOC107681405,LOC107705686,LOC107551510,LOC107559848,LOC107726996,LOC107666605 other upstream 159823 6964742 ~ 6981961 (-)
LOC122329304 ccm2l,LOC107666505,LOC107551511 other upstream 189248 6994167 ~ 7003523 (-)
G155596 sox18,LOC107727030,LOC107681403,LOC107551552,LOC107666636,LOC107705673,LOC107571663 other upstream 471529 7276448 ~ 7278323 (-)
G155807 NA other upstream 1740475 8545394 ~ 8551977 (-)

Expression


Co-expression Network