LOC122329022


Basic Information

Item Value
gene id LOC122329022
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10880591 ~ 10882652 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247879.1
tcCAGGGGCATCTTTGACATCCAGCCATTGTTACCTTAATGATGCGAGCCAAACCAAAATCAGCCACTTTACACACCAGGTCTTCTCCGACCAGGATGTTTCGAGCGGCAAGGTCCCTGTGGACAATGTGTCGATCTTCCAGCTCAAAGTCTTTGGATTATCTCAAGTCAAAGTGGAGAACTCAATGATCTGGACTGTGGACTTCAGCTTTGATCGTCAAAGCGTGACAGCTTCCCAGACTTCCCCAAAATGGCCCTCCCCCAGCTTCTTGAGTAGCTGAAACTCCTCCCTCGGCCGCTCCCACGGCTCCATGTCAAACAACTCTCTCTGCACGTGGACACACATGCAACAAAGCTGAC

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247879.1 True 359 lncRNA 0.51 3 10880591 10882652

Neighbor

gene id symbol gene type direction distance location
dnmt3bb.1 dnmt3bb.1,LOC107672053,LOC107657059,LOC107747976,LOC107563667,LOC107603157,LOC108276083 coding downstream 115583 10730061 ~ 10765008 (-)
dnmt3bb.2 LOC107707749,LOC107747973,LOC107559473,LOC107657061,LOC107603113 coding downstream 153022 10709346 ~ 10727569 (-)
cdc42l2 LOC107603155,LOC107707751,LOC107672009 coding downstream 171422 10705983 ~ 10709169 (-)
LOC122328796 LOC107747975,LOC107657065,LOC107672050,LOC570014,LOC107559461,LOC107747988,LOC107603112 coding downstream 185641 10689664 ~ 10694950 (-)
LOC122328797 LOC107747975,LOC107657065,LOC107672050,LOC570014,LOC107559461,LOC107559462,LOC107747988,LOC107603112 coding downstream 193876 10679005 ~ 10686715 (-)
ppdpfb ppdpfb,ppdpf,LOC107719911,LOC107560892,LOC107657053,LOC107747982,LOC107563664 coding upstream 17174 10899826 ~ 10901786 (-)
tpd52l2b tpd52l2,tpd52l2b,LOC107672016,LOC107719909 coding upstream 21228 10903880 ~ 10914203 (-)
trim101 LOC107719918,LOC107671958,LOC107560876,LOC107656995,LOC107747989 coding upstream 32979 10915631 ~ 10923080 (-)
dnajc5ab LOC107747984,LOC107672029,LOC107563663,LOC107719908,LOC107657050,LOC107560895 coding upstream 40474 10923126 ~ 10934907 (-)
bhlhe23 bhlhe23,LOC107737661,LOC107560898,LOC107671927,LOC107657004,LOC107756976,LOC107563681 coding upstream 102733 10985385 ~ 10987412 (-)
G156478 NA non-coding downstream 152343 10727964 ~ 10728248 (-)
G156471 NA non-coding downstream 177770 10702596 ~ 10702821 (-)
G156469 NA non-coding downstream 180367 10698597 ~ 10700224 (-)
G156468 NA non-coding downstream 183914 10696452 ~ 10696677 (-)
G156459 NA non-coding downstream 205012 10667957 ~ 10675579 (-)
G156538 NA non-coding upstream 76983 10959635 ~ 10959846 (-)
G156715 NA non-coding upstream 151090 11033742 ~ 11035495 (-)
G156719 rnd1a,LOC107560900,LOC107737660,LOC107657046,LOC107563659,LOC107741331,LOC107672025 non-coding upstream 164493 11047145 ~ 11053295 (-)
LOC122329093 NA non-coding upstream 167641 11050293 ~ 11057995 (-)
G156726 LOC107737655 non-coding upstream 188758 11071410 ~ 11075961 (-)
LOC122328798 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 202441 10675680 ~ 10678150 (-)
ankrd52a ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831,LOC107723718 other downstream 494624 10218473 ~ 10385967 (-)
LOC122328779 taf8,LOC107723763,LOC107756368,LOC107549030,LOC107671856,LOC107594013,LOC107701755 other downstream 513222 10363905 ~ 10367369 (-)
LOC122329224 NA other downstream 520805 10355941 ~ 10359786 (-)
zgc:153284 LOC107701733,LOC107571300,LOC107756391,LOC107549061,LOC107708783 other downstream 1046909 9831809 ~ 9833682 (-)
G156746 NA other upstream 218092 11100744 ~ 11105223 (-)
LOC122328546 rpl10 other upstream 858748 11741400 ~ 11746620 (-)
LOC122329329 NA other upstream 862610 11745262 ~ 11745395 (-)
atp2b3b atp2b3b,atp2b3,LOC107737604,LOC107712727,LOC107672007,LOC107593407 other upstream 881057 11763709 ~ 11857968 (-)
si:dkey-93l1.9 si:dkey-93l1.9,LOC107699586,LOC107593449,LOC107671978,LOC107699561,LOC107576394,LOC107737609 other upstream 917270 11799922 ~ 11801632 (-)

Expression


Co-expression Network